BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485453
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1216 0.0
> AT3G51010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast
hits to 24 proteins in 9 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:18946698-18948157
REVERSE LENGTH=858
Length=858
Score = 1216 bits (658), Expect = 0.0
Identities = 740/779 (95%), Gaps = 8/779 (1%)
Strand=Plus/Plus
Query 1 GTTTCAAGTCTCAG-ACTTTGGTGGAATCGGCGAAGTGAAAATTTCGAAGCTTGATCGGT 59
|||||||||||| | |||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 1 GTTTCAAGTCTC-GAACTTTGTTGGAATCGGCTAAGTGATAATTTCGAAGCTTGATCGGT 59
Query 60 AAATCTAACAGCTTTTGGATCGCAATCTGTTCGCTGATGCTTTGGTAAAAATGGGTTTCG 119
||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 60 AAATCCAGGAGCTTTTGGATCGGAATCTGTTCGCTGATGCTTTGGTGAAAATGGGTTTCG 119
Query 120 GTGCAATTAGATCGATTTTTCGTCCATTTTCGAGAACCTTAGTTTCGCGTGCCGTCGCTA 179
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 120 GTGCAATTAGATCGATTTTGCGTCCATTGTCGAGAACCTTAGTTTCGCGTGCCGTCGTTA 179
Query 180 ACTACTCGTCTGCGCCGTTCGCTGCGACGATTCCGGCTGCGAAACCAGAGTTATGCTCCT 239
|||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||
Sbjct 180 ACTACTCGTCTGCGCCGTTCAATGCGACGATTCCGGCTGCTAAACCCGAGTTATGTTCCT 239
Query 240 TCTTCGGTGGATCGATGACTCATTTGAGGTTACCATGGATTCCAATGGCTAACCATTTTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTCGGTGGATCGATGACTCATTTGAGGTTACCATGGATTCCAATGGCTAACCATTTTC 299
Query 300 ATAGCTTAAGCTTAACTGATACTCGGCTTCCC-AAGAGACGACCCATGACTCATCCCAAG 358
||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 300 ATAGCTTAAGCTTGACTGATACTCGGC-TCCCGAAGAGACGACCCATGACTCATCCCAAG 358
Query 359 AGGAAACGATCCAAATTGAAACCTCCAGGGCCTTATGCATATGTTCAATATACACCTGGC 418
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 AGGAAAAGATCCAAATTGAAACCTCCAGGGCCTTATGCATACGTTCAATATACACCTGGC 418
Query 419 CAGCCAATTTCTTCAAACAATCCTAACGAGGGCAGTGTGAAGAGAAGGAATGCGAAGAAG 478
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 419 CAGCCAATTTCTTCAAACAATCCTAATGAGGGAAGTGTGAAGAGAAGAAATGCGAAGAAG 478
Query 479 CGGATAGGGCAGCGTCGTGCTTTTATACTGTCTgagaagaagaagaggcaagcgctggtg 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGCATAGGGCAGCGTCGTGCTTTTATACTGTCTGAGAAGAAGAAGAGGCAAGCGCTGGTG 538
Query 539 caagaggcgaagaggaagaagagaattaagcaagTGGAACGTAAGATGGCTGCTGTCGCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAAGAGGCGAAGAGGAAGAAGAGAATTAAGCAAGTGGAACGTAAGATGGCTGCTGTCGCT 598
Query 599 AGGGACCGAGCTTGGGCTGAAAGACTGACTGAGCTT-AAGCAGCTCGAAGAAGAGAAGAA 657
||||||||||| |||||||||||||||| ||||||| || ||||| ||||||||||||||
Sbjct 599 AGGGACCGAGCATGGGCTGAAAGACTGATTGAGCTTCAA-CAGCTGGAAGAAGAGAAGAA 657
Query 658 GAACTCAATGTCTTCTTGAGATCAAACATAGAAATAATCCCAAATGACAATCTCTTTTCT 717
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GAAATCAATGTCTTCTTGAGATCAAACATAGAAATAATCCTAAATGACAATCTCTTTTCT 717
Query 718 TGTCTTGAGTTT-AGAATTACGCTTCTTTGTTGTGTTTGGCGTGTTCTCTT-AGAGTTA 774
||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 718 TGTCTTGAGTTAGAGAATTACTCTTCTTTGTTGTGTTTGGCATGTTCTCTTGAGAGTTA 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5