BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485454

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   532    7e-151


> AT3G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G66370.1); 
Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18949645-18950221 
FORWARD LENGTH=402
Length=402

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 374/414 (90%), Gaps = 12/414 (3%)
 Strand=Plus/Plus

Query  1    ATGTTTTCTTCAAGTCGTCCTGGATCTACAAGCCTGACTTGTGGGTTTAAAGTGAACACT  60
            |||||||| ||||||||| |   |||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTTTCGTCAAGTCGTAC---ATCTACAAGCCTGACTTGTGGGTTTAAAGTGAACACT  57

Query  61   AACTCTCCCGAATGGCACAAGAGCATGACGAAAATCCTTAAGAAAATCAAAGGAGGGAAT  120
            | ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  58   AGCTCTCCCGAATGGCACAAGAGCATGACCAAAATCCTCAAGAAAATCAAAGGAGGGAAT  117

Query  121  TTTTGGATAGATGTGGACGAAGGAATGGCATACGTAACGGGTCAAGGCGATCCAAACAAG  180
            ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  118  TTTTGGATAGACGTGGACGAAGGAATGGCATACGTCACGGGTCATGGCGATCCAAACAAG  177

Query  181  CTACTGAAACTAATGGGTTCAAAGAGAGGCAAAGATGCTGAAATGGCTTTTGTGAGAACC  240
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct  178  CTATTGAAACTAATGGGTTCAAAGAGAGGAAAAGATGCTGAAATGGCTTTTGTGAAAACC  237

Query  241  GGAACGCACCATCCTCAACATCATCATCATCATGATCCCAATTTTTACAACAATTGTCAA  300
            |||||||| |||| |||||||||||||||||||||||||| ||||||||      |||| 
Sbjct  238  GGAACGCAACATCATCAACATCATCATCATCATGATCCCAGTTTTTACA------GTCAG  291

Query  301  AACTCATACTTTGGCCAATGGCCAGGGTACTACCCACCGGCCGGCTCGGCGATGCAACCT  360
            | |||||||   |||||||||  ||||||||||||   |   |||||| |||||||||||
Sbjct  292  AGCTCATACCCCGGCCAATGGGGAGGGTACTACCCT--GTT-GGCTCGACGATGCAACCT  348

Query  361  TACCATCATCAATATCCATTTTCCGGTGGATATAATAACTACGGTTATTATTAG  414
            |||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  349  TACCATCAACAATATCCATATTCCGGCGGATATAATAACTACGGTTATTATTAG  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5