BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485455
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51030.1 | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-t... 754 0.0
> AT3G51030.1 | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type
1 | chr3:18950996-18952050 REVERSE LENGTH=567
Length=567
Score = 754 bits (408), Expect = 0.0
Identities = 479/512 (94%), Gaps = 9/512 (2%)
Strand=Plus/Plus
Query 1 GTGACGCGCATGCTAAGTAATTG----AAAAAACGCAAAAGAGGAGGAGAAACAGAACAT 56
||||||||||||||||||||||| |||||| || |||||||| ||||||||||||
Sbjct 18 GTGACGCGCATGCTAAGTAATTGAAAAAAAAAAAACACAAGAGGAGAAGAAACAGAACAG 77
Query 57 AGGAG-ATAAGAGAGAAGATGGCTTCGGAAGAAGGACAAGTGATCGCGTGCCATACCGTT 115
|| || | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 78 AGAAGAAAAAGAGAGAAGATGGCTTCGGAAGAAGGACAAGTGATCGCCTGCCACACCGTT 137
Query 116 GAGACATGGAACGAGCAACTCCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGAT 175
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 138 GAGACATGGAACGAGCAGCTTCAGAAGGCTAATGAATCCAAAACTCTTGTGGTGGTTGAT 197
Query 176 TTCACGGCTTCTTGGTGTGGACCATGTCGTTTTATCGCGCCATTCTTTGCTGATTTGGCT 235
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 198 TTCACGGCTTCTTGGTGTGGACCATGTCGTTTCATCGCTCCATTCTTTGCTGATTTGGCT 257
Query 236 AAGAAACTCCCTAATGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCA 295
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 AAGAAACTTCCTAACGTGCTTTTCCTCAAGGTTGATACTGATGAATTGAAGTCGGTGGCA 317
Query 296 AGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTCTTGAAGGAAGGGAAGATTTTG 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 318 AGTGATTGGGCGATACAGGCGATGCCAACCTTCATGTTTTTGAAGGAAGGGAAGATTTTG 377
Query 356 GACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAATCTACCATTGCCAAACACTTGGCT 415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 378 GACAAAGTTGTTGGAGCCAAGAAAGATGAGCTTCAGTCTACCATTGCCAAACACTTGGCT 437
Query 416 TAAGCTTTCGACTCTTATATATGTCTTAAGATGTTCGATTAATTAATTGCTCTAGTACTC 475
||||||||| |||||||||||| |||||||||||| |||||||| || || | |||||
Sbjct 438 TAAGCTTTCCACTCTTATATATCTCTTAAGATGTTGGATTAATTG-TT-CTAT--TACTC 493
Query 476 TTGACATGTTATAACTCGTTCCCTTTTGTTAT 507
|||||||||||||||| |||||| ||||||||
Sbjct 494 TTGACATGTTATAACTTGTTCCCCTTTGTTAT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5