BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485457
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51040.1 | Symbols: RTH | RTE1-homolog | chr3:18952122-18953... 1363 0.0
> AT3G51040.1 | Symbols: RTH | RTE1-homolog | chr3:18952122-18953801
REVERSE LENGTH=1049
Length=1049
Score = 1363 bits (738), Expect = 0.0
Identities = 937/1032 (91%), Gaps = 18/1032 (2%)
Strand=Plus/Plus
Query 1 CAATGAGCCAAACACGTTCTTTA--GCCATCGTTCGTAAAATTGGGGCCGAGAGAGAAAC 58
||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 24 CAAGGAGCCAAACACGTTCTTTAGTGTCATCGTTCGTAAAATTGGGGCCGAGAGAGAAAC 83
Query 59 ACAAATTTTCCAGG-CAAAGGCAGTGATT-AAAATTTGTGTTAGATCCGATTTAATC-TC 115
| |||||| ||||| ||||||||||||| || | |||| |||||||||| |||||| ||
Sbjct 84 AAAAATTTCCCAGGAAAAAGGCAGTGATTGAAGA-TTGTATTAGATCCGA-TTAATCGTC 141
Query 116 GTCTTTGTCGCTTGAACTGAGGATCAAATAACTGAACCCAACTGGACTTGGAAATGGGAG 175
|| | ||||||||||||||| ||||||||| ||| | |||||||| ||||| |||||||
Sbjct 142 TTCCTGGTCGCTTGAACTGAGAATCAAATAATTGAGCTCAACTGGATTTGGATATGGGAG 201
Query 176 AGACAGTAATAGATTCAGAACATGGCATGATGATCGGCTTATCAGATCCCATGAAAATTG 235
|||||| || ||||||||||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct 202 AGACAGCAACAGATTCAGAACATCGCATGATGATCGGATTATCGGATCCTATGAAAATTG 261
Query 236 ATCCTAGAAGAGATCGGTTCCCATGCTGCATTGTTTGGACACCTCTTCCCTTAATTTCAT 295
|||| | |||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 262 ATCCCAAAAGAGACCGGTTTCCATGCTGCATTGTTTGGACACCTCTTCCCTTCATTTCAT 321
Query 296 GGCTGGTTCCCTTTATCGGCCATGTGGGTATTTGCAGAGAAGACGGTGTCATCCTCGACT 355
||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 322 GGCTGGTTCCCTTCATCGGCCACGTCGGTATCTGCAGAGAAGACGGTGTCATCCTCGACT 381
Query 356 TTGCCGGACCTAATTTTGTCTGTGTTGATAATTTTGCATTTGGAGCTGTTGCTCGATATA 415
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 382 TTGCAGGACCTAATTTTGTCTGTGTTGATAATTTTGCATTTGGAGCTGTTTCTCGATATA 441
Query 416 TTCAAATCAAC-AAGAAAAAGGAATCATCTCGTTCTTCCGGTTCACGTATGTTCAATGGT 474
||||||||||| ||| ||| ||| ||||||||||||||| |||| ||||||||||||||
Sbjct 442 TTCAAATCAACAAAG-AAATGGAGTCATCTCGTTCTTCCAGTTCTGGTATGTTCAATGGT 500
Query 475 GAGAGCAGATATGAACAAGAAGAAGACAGTCATGAGAAAGAGCCAATGTGGGATGATGCA 534
||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 501 GAGAGGAGATATGAGCAAGAAGAAGATAGTCATGAGAAAGAGCCAACATGGGATGATGCA 560
Query 535 CTGATAAAAGGCACACAAGAGTACCAACATCACTCATATAACATATTCACATGCAACTGT 594
|||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 561 CTGAGAAAAAGCACGCAAGAGTACCAACATCACTCATATAACATACTCACATGCAACTGT 620
Query 595 CATTCCTTTGTAGCCAACAACCTGAACCGTCTAGCTGTAAAGTCAGGCGGGTGGAACGTG 654
||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 621 CATTCCTTTGTAGCCAACAACCTGAACCGTCTATCTATAAAGTCAGGCGGATGGAACGTG 680
Query 655 GTGAATCTAGCGGCACTTGTG-TTCTTCAAGGGACGTTGGGTGAGCAAAGCGGCTATAGT 713
|||||||| ||| |||| ||| || ||||||||||||||||||| |||| ||||||||||
Sbjct 681 GTGAATCTCGCGACACTAGTGCTT-TTCAAGGGACGTTGGGTGAACAAAACGGCTATAGT 739
Query 714 AAAGTCGTTGTTGCCTCCAGTCATAGTCTACACTATAGGAATCTTACTTGGTGGTTGGAC 773
|||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 740 AAAGTCCTTGTTGCCTCCACTCATAGTCTACACTATAGGAATCTTACTCGGTGGTTGGAC 799
Query 774 TTTCATAGCTTCCTGCTCGATTCTAGCGGTTTTGCTTACTGCTTGGTTCATCATGGGAAC 833
|||||| || |||||||||||||||| |||||||||||| | ||||||||||| |||||
Sbjct 800 TTTCATTGCCTCCTGCTCGATTCTAGTGGTTTTGCTTACCGGGTGGTTCATCATTGGAAC 859
Query 834 ATATTGTTTCAAGAAACTGATCCAGTTATAG-TTTGAATAATAATGTACAAATGATGTCT 892
|||||||||||||||||||| ||| | ||| ||||||| ||||||||||||||||||||
Sbjct 860 GTATTGTTTCAAGAAACTGATTCAGCTGTAGATTTGAATCATAATGTACAAATGATGTCT 919
Query 893 ACAGAATGTTTTT-ACTTTTTACGATGGATATTTACAACTTTGCTTTGTTTGTGGTTAAT 951
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 920 ACAAAATGTTTTTTACTTTTTACGATGGATATTTACAACTTTGCTTTGTGTGTGGTTAAT 979
Query 952 TTGTTaaaaaagcaaaaaTTTGAGGAGTAAA-GTGGGAATATATATATGATTTGGATAAA 1010
|||||| || | |||| ||||||||||||| ||| |||||| | |||||||||| ||||
Sbjct 980 TTGTTACAA--GTAAAACTTTGAGGAGTAAAAGTGTGAATAT-T-TATGATTTGGGTAAA 1035
Query 1011 GAAGGAAAGTAG 1022
||||||||||||
Sbjct 1036 GAAGGAAAGTAG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5