BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485459
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51075.1 | Symbols: | other RNA | chr3:18968743-18972285 RE... 1770 0.0
AT3G51070.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 819 0.0
> AT3G51075.1 | Symbols: | other RNA | chr3:18968743-18972285
REVERSE LENGTH=1755
Length=1755
Score = 1770 bits (958), Expect = 0.0
Identities = 1079/1135 (95%), Gaps = 17/1135 (1%)
Strand=Plus/Minus
Query 656 ATGTGATCTAGTAGATATGGTATCACAATGTCCCACACACAAAGCTAGCTGAGGTAAAAG 715
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1129 ATGTGATCTAGTAGATATGGTACCACAATGTCCCACACACAAAGCTAGCTGAGGTAAAAG 1070
Query 716 GACATCAGAACTGGGTGAAAGTCACTGGCGAGTTCTTGACGTTTCCTGGTGGTGGAACAC 775
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GACATCAGAACTGGGTGAAGGTCACTGGCGAGTTCTTGACGTTTCCTGGTGGTGGAACAC 1010
Query 776 AGTTCATCCATGGAGCTCTTCATTATATCGATTTTCTTCAGCAGGTGAAC--TCATTTCT 833
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1009 AGTTCATCCATGGAGCTCTTCATTATATCGATTTTCTTCAGCAGGTGAACACTCATTTCT 950
Query 834 TGATTTCAGGGTAGCGTTAAAATCGGGTCATATTGGATGTTGGATGTGGAGTGGCGAGCT 893
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGATTTCAGTATAGTGTTAAAATCGGGTCATATTGGATGTTGGATGTGGAGTGGCGAGCT 890
Query 894 TTGGAGGTTTCCTCTTTGAAAGAGATGTTATAGCAATGTCTCTTGCACCGAAAGATGAAC 953
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 889 TTGGCGGTTTCCTCTTTGAAAGAGATGTTATAGCAATGTCTCTTGCACCAAAAGATGAAC 830
Query 954 ACGAGGCTCAAGTTCAGTTTGCTCTTGAAAGAAAGATTCCAGCCATCTCTGCGGTTATGG 1013
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 829 ACGAGGCTCAAGTCCAGTTTGCTCTTGAAAGAAAGATTCCAGCCATCTCAGCAGTTATGG 770
Query 1014 GCTCCAAGCGACTGCCATTCCCGAGCAGAGTGTTTGATCTTATCCACTGTGCACGTTGTA 1073
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GCTCTAAGCGACTGCCATTCCCGAGCAGAGTGTTTGATCTTATCCACTGTGCACGTTGTA 710
Query 1074 GAGTCCCATGGCATAATGAGGGAGGTATGCTTCTTCTGGAACTTAATCGGATGCTTAGGC 1133
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 709 GAGTCCCATGGCATAATGAGGGTGGTATGCTTCTTCTGGAACTTAATCGGATGCTTAGGC 650
Query 1134 CCGGAGGTTATTTTGTCTGGTCAGCAACACCAGTCTACCAGAAGCTTGAAGAAGATGTTC 1193
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CTGGAGGTTATTTTGTCTGGTCAGCAACACCAGTCTACCAGAAGCTTGAAGAAGATGTTC 590
Query 1194 AAATCTGGAAAGGTAAGGACTAAAGTAAAATGCTTGAACTTAAATAGAGTTCCTCCTT-T 1252
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 589 AAATCTGGAAAGGTAATGACTAAAGTAAAATGCTTGAACTTAACTAGAGTTCCTCCTTCT 530
Query 1253 ATTAG---GTTTCACTGAAGCTGACATGTTTTGAGTTATATAGAAATGTCCGCGTTGACA 1309
|| | ||||||||||| |||| ||||||||||| || ||||||||||||||||||||
Sbjct 529 TTT-GTTTGTTTCACTGAACCTGAGATGTTTTGAGTGATGTAGAAATGTCCGCGTTGACA 471
Query 1310 AAATCCTTGTGCTGGGAACTTGTGACAATCAACAAGGATAAACTCAATGGTGTTGGTGCT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 470 AAATCCTTGTGCTGGGAACTTGTGACAATCAACAAGGATAAACTCAATGGTATTGGTGCT 411
Query 1370 GCAATCTACCAGAAACCAATGTGGTCGAGAGAGGAAGCAAGTGGCCAGTGAACTGGCCCC 1429
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 410 GCAATCTACCAGAAACCAATGTGGTCGAGAGAGGAAGCAAGTGGCCCGTGAATTGGCCCC 351
Query 1430 GTCGGCTTCAAACACCTCCTTACTGGCTAAACAGCTCTCAAATGGGGATCTATGGGAAAC 1489
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 350 GTCGGCTTCAAACACCGCCTTACTGGTTAAACAGCTCTCAAATGGGGATATATGGGAAAC 291
Query 1490 CAGCTCCTCGAGATTTCACTACAGATTATGAACA-TT--GGAAACATGTTGTAAGCAAAA 1546
|||||||||||||||||||||||||||||||||| || || ||| ||| | | ||| |
Sbjct 290 CAGCTCCTCGAGATTTCACTACAGATTATGAACACTTTTGGTAAC--GTT-TCATCAACA 234
Query 1547 AATAT-TCTCTTGTTTCTATTTC-TTTTGAAAGGTGCAATCTTGTTCCAGTAATGGCAGA 1604
| || |||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 233 A-TAAGTCTCTTGTTT-TGTTTTGTTTTGAAAGGTGCAATCTTGTTCCAGTAATGGCAGA 176
Query 1605 AGTGGATAGAATAGTAAGACCAGGAGGTAAACTCATAGTTCGTGACGAATCGAATGTGAT 1664
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 175 AGTGGATAGAATAGTAAGACCAGGAGGTAAACTAATAGTTCGTGACGAATCAAATGTGAT 116
Query 1665 AAGAGAAGTTGAGAACATGTTGAAGTCACTACACTGGGATGTTCATTTAACCTTCTCCAA 1724
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 115 AAGAGAAGTTGAGAACATGTTGAAGTCACTGCACTGGGATGTTCACTTAACTTTCTCCAA 56
Query 1725 ACACCAAGAAGGAATATTAAGTGCACAAAAAGGATTCTGGAGACCAGAAACTTCT 1779
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 55 ACACCAAGAAGGAATCTTAAGTGCACAAAAAGGATTCTGGAGACCAGAAACTTCT 1
Score = 747 bits (404), Expect = 0.0
Identities = 459/483 (95%), Gaps = 14/483 (3%)
Strand=Plus/Minus
Query 34 TTCATGGACAACAAAATATGAGACACAGAGACCATAACTAAATTTAGAGACACGAAATTG 93
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TTCATGGACAACAAAATATGAAACACAGAGACCATAACTAAATTTAGAGACACGAAATTG 1598
Query 94 AAAGTCCCATGTCCGACTCTATAGGATCTTTGATCCAGtcttgtctcttcacaacctctc 153
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 AAAGTCCCATATCCGACTCTATAGGATCTTTGATCCAGTCTTGTCTCTTCACAACCTCTC 1538
Query 154 tttctcttctttttcttctatttttacttccttcaactcccattttactccttcattttt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 TTTCTCTTCTTTTTCTTCTATTTTTACTTCCTTCAACTCCCATTTTACTCCTTCATTTTT 1478
Query 214 cttcttctt-t--ctcc----CTAGTA-TA--CGCACGACCGGAAAGATGGCATTCGGGA 263
||||||||| | |||| |||||| || |||| ||||| ||||||||| |||||||
Sbjct 1477 CTTCTTCTTCTTTCTCCATAACTAGTACTATACGCAAGACCGTAAAGATGGCCTTCGGGA 1418
Query 264 GGGGACGTGGCAACAAACGCACTTCGACGTCGTCCTATGCGTCGACCATTACAATGGTCA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GGGGACGTGGCAACAAACGCACTTCGACGTCGTCCTATGCGTCGACCATTACAATGGTCA 1358
Query 324 TCTTTGTGGCTCTGTGTGTCTTCGGTGTGTGGATGCTTTCTTCCAATTCTGTTATCCCAC 383
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1357 TCTTTGTGGCTCTGTGTGTCTTCGGGGTGTGGATGCTTTCTTCCAATTCCGTTATTCCAC 1298
Query 384 CGCAGATCACACAAGGCTCCACTCGAACGGCTGTCGCAGAGACAGAGAGGAGTGATGTGT 443
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1297 CGCAGATCACACAAGGCTCCACTCGAGCGGCTGTCGCAGAGACAGAGAGGAGTGATGTGT 1238
Query 444 CTGTCTCTTCAAACGGTAATGATGAGCCCGAACCCACGAAACAAGA-TCTGAAGATGAGC 502
||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1237 CTGCCTCTTCAAACGGTAATGATGAGCCCGAACCCACGAAACAAGAGTCTGA---TGAGC 1181
Query 503 AAC 505
|||
Sbjct 1180 AAC 1178
> AT3G51070.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:18969068-18972291
FORWARD LENGTH=2688
Length=2688
Score = 819 bits (443), Expect = 0.0
Identities = 512/543 (94%), Gaps = 14/543 (3%)
Strand=Plus/Plus
Query 668 AGATATGGTATCACAATGTCCCACACACAAAGCTAGCTGAGGTAAAAGGACATCAGAACT 727
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AGATATGGTACCACAATGTCCCACACACAAAGCTAGCTGAGGTAAAAGGACATCAGAACT 1363
Query 728 GGGTGAAAGTCACTGGCGAGTTCTTGACGTTTCCTGGTGGTGGAACACAGTTCATCCATG 787
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GGGTGAAGGTCACTGGCGAGTTCTTGACGTTTCCTGGTGGTGGAACACAGTTCATCCATG 1423
Query 788 GAGCTCTTCATTATATCGATTTTCTTCAGCAG---GTG-AACTCATTTCTTGATTTCAGG 843
|||||||||||||||||||||||||||||||| || || |||| | | | ||
Sbjct 1424 GAGCTCTTCATTATATCGATTTTCTTCAGCAGTCTTTGAAAAACATTGC--G---T-GGG 1477
Query 844 GT-AGCGTTAAAATCGGGTCATATTGGATGTTGGATGTGGAGTGGCGAGCTTTGGAGGTT 902
|| | || | | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1478 GTAAACG-T--ACTCGGGTCATATTGGATGTTGGATGTGGAGTGGCGAGCTTTGGCGGTT 1534
Query 903 TCCTCTTTGAAAGAGATGTTATAGCAATGTCTCTTGCACCGAAAGATGAACACGAGGCTC 962
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1535 TCCTCTTTGAAAGAGATGTTATAGCAATGTCTCTTGCACCAAAAGATGAACACGAGGCTC 1594
Query 963 AAGTTCAGTTTGCTCTTGAAAGAAAGATTCCAGCCATCTCTGCGGTTATGGGCTCCAAGC 1022
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1595 AAGTCCAGTTTGCTCTTGAAAGAAAGATTCCAGCCATCTCAGCAGTTATGGGCTCTAAGC 1654
Query 1023 GACTGCCATTCCCGAGCAGAGTGTTTGATCTTATCCACTGTGCACGTTGTAGAGTCCCAT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 GACTGCCATTCCCGAGCAGAGTGTTTGATCTTATCCACTGTGCACGTTGTAGAGTCCCAT 1714
Query 1083 GGCATAATGAGGGAGGTATGCTTCTTCTGGAACTTAATCGGATGCTTAGGCCCGGAGGTT 1142
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1715 GGCATAATGAGGGTGGTATGCTTCTTCTGGAACTTAATCGGATGCTTAGGCCTGGAGGTT 1774
Query 1143 ATTTTGTCTGGTCAGCAACACCAGTCTACCAGAAGCTTGAAGAAGATGTTCAAATCTGGA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 ATTTTGTCTGGTCAGCAACACCAGTCTACCAGAAGCTTGAAGAAGATGTTCAAATCTGGA 1834
Query 1203 AAG 1205
|||
Sbjct 1835 AAG 1837
Score = 414 bits (224), Expect = 1e-114
Identities = 246/256 (96%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 251 ATGGCATTCGGGAGGGGACGTGGCAACAAACGCACTTCGACGTCGTCCTATGCGTCGACC 310
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTTCGGGAGGGGACGTGGCAACAAACGCACTTCGACGTCGTCCTATGCGTCGACC 60
Query 311 ATTACAATGGTCATCTTTGTGGCTCTGTGTGTCTTCGGTGTGTGGATGCTTTCTTCCAAT 370
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATTACAATGGTCATCTTTGTGGCTCTGTGTGTCTTCGGGGTGTGGATGCTTTCTTCCAAT 120
Query 371 TCTGTTATCCCACCGCAGATCACACAAGGCTCCACTCGAACGGCTGTCGCAGAGACAGAG 430
|| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TCCGTTATTCCACCGCAGATCACACAAGGCTCCACTCGAGCGGCTGTCGCAGAGACAGAG 180
Query 431 AGGAGTGATGTGTCTGTCTCTTCAAACGGTAATGATGAGCCCGAACCCACGAAACAAGA- 489
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGAGTGATGTGTCTGCCTCTTCAAACGGTAATGATGAGCCCGAACCCACGAAACAAGAG 240
Query 490 TCTGAAGATGAGCAAC 505
||||| ||||||||
Sbjct 241 TCTGA---TGAGCAAC 253
Score = 346 bits (187), Expect = 5e-94
Identities = 199/205 (97%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1575 AAGGTGCAATCTTGTTCCAGTAATGGCAGAAGTGGATAGAATAGTAAGACCAGGAGGTAA 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2478 AAGGTGCAATCTTGTTCCAGTAATGGCAGAAGTGGATAGAATAGTAAGACCAGGAGGTAA 2537
Query 1635 ACTCATAGTTCGTGACGAATCGAATGTGATAAGAGAAGTTGAGAACATGTTGAAGTCACT 1694
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2538 ACTAATAGTTCGTGACGAATCAAATGTGATAAGAGAAGTTGAGAACATGTTGAAGTCACT 2597
Query 1695 ACACTGGGATGTTCATTTAACCTTCTCCAAACACCAAGAAGGAATATTAAGTGCACAAAA 1754
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2598 GCACTGGGATGTTCACTTAACTTTCTCCAAACACCAAGAAGGAATCTTAAGTGCACAAAA 2657
Query 1755 AGGATTCTGGAGACCAGAAACTTCT 1779
|||||||||||||||||||||||||
Sbjct 2658 AGGATTCTGGAGACCAGAAACTTCT 2682
Score = 267 bits (144), Expect = 4e-70
Identities = 156/162 (96%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 1384 ACCAATGTGGTCGAGAGAGGAAGCAAGTGGCCAGTGAACTGGCCCCGTCGGCTTCAAACA 1443
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2050 ACCAATGTGGTCGAGAGAGGAAGCAAGTGGCCCGTGAATTGGCCCCGTCGGCTTCAAACA 2109
Query 1444 CCTCCTTACTGGCTAAACAGCTCTCAAATGGGGATCTATGGGAAACCAGCTCCTCGAGAT 1503
|| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2110 CCGCCTTACTGGTTAAACAGCTCTCAAATGGGGATATATGGGAAACCAGCTCCTCGAGAT 2169
Query 1504 TTCACTACAGATTATGAACATTGGAAACATGTTGTAAGCAAA 1545
|||||||||||||||||||| |||||||||||||||||||||
Sbjct 2170 TTCACTACAGATTATGAACACTGGAAACATGTTGTAAGCAAA 2211
Score = 246 bits (133), Expect = 5e-64
Identities = 161/174 (93%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 486 AAGATCTGAAGATGAGCAACGGAAGTCAGCGAAAGAGAAGAGTGAAACAACGAGCTCAAC 545
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 AAG-TCTGAAGACGAGCAACGGAAGTCAGCGAAAGAGAAGAGTGAAACGACGAGCTCAAA 356
Query 546 GACTCAAAAACAAGAGACCCAACAA--CA-CGATGACAAGCTTTCCGAGGAAAAAGAGAA 602
|||||||| |||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 357 GACTCAAACACAAGAGACCCAACAAAACAACGATGACAAAATTTCCGAGGAAAAAGAGAA 416
Query 603 AGATAACGGCAAGGAGAAAGAGACGGTGCAAGAGAATGAGGAGGGTCAGATGAA 656
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 417 AGATAACGGCAAGGAGAACCAGACGGTGCAAGAGAGTGAGGAGGGTCAGATGAA 470
Score = 172 bits (93), Expect = 8e-42
Identities = 95/96 (99%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1291 AGAAATGTCCGCGTTGACAAAATCCTTGTGCTGGGAACTTGTGACAATCAACAAGGATAA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 AGAAATGTCCGCGTTGACAAAATCCTTGTGCTGGGAACTTGTGACAATCAACAAGGATAA 1895
Query 1351 ACTCAATGGTGTTGGTGCTGCAATCTACCAGAAACC 1386
|||||||||| |||||||||||||||||||||||||
Sbjct 1896 ACTCAATGGTATTGGTGCTGCAATCTACCAGAAACC 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5