BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485462
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51090.1 | Symbols: | Protein of unknown function (DUF1640)... 1735 0.0
> AT3G51090.1 | Symbols: | Protein of unknown function (DUF1640)
| chr3:18977988-18980003 REVERSE LENGTH=1251
Length=1251
Score = 1735 bits (939), Expect = 0.0
Identities = 1153/1247 (92%), Gaps = 51/1247 (4%)
Strand=Plus/Plus
Query 1 AAAGACTCACGCTTTCTCTACCATCGTCGTCCGTCTGTTTCATTTGATGGTGCTGAGACG 60
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AAAGACGCACGCTTTCTCTATCATCGTCGTCCGTCTGTTTCATTTGATGGTGCGGAGACG 60
Query 61 TCTAAGCGATTTCCATGGATGACACAACCTTCATTAGATCAAATCC-CACCAAACCCATC 119
||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||||||||
Sbjct 61 TCTAAGCGATTTCCATGGATGACACCACCTTCATAAGAAC-AATCCTCACCAAACCCATC 119
Query 120 TTCAAAATTTTCTTCTTTTGA--A-CATTTGCATGCTTACCCGATTGGGAAACTC-TTGT 175
|||||| |||||||||||||| | || ||||||||||||||||||||||||||| ||||
Sbjct 120 TTCAAATTTTTCTTCTTTTGACCACCA-TTGCATGCTTACCCGATTGGGAAACTCTTTGT 178
Query 176 TATCCTTATTGATCTTCTTCCAACAGCGATTTCCCGATCCGAAATTTT--G--G---G-- 226
|||||||||||||||||||||||| ||||||||||||||| ||||||| | | |
Sbjct 179 TATCCTTATTGATCTTCTTCCAACGGCGATTTCCCGATCC-AAATTTTGGGTTGATTGAA 237
Query 227 TTCAAAGTTTCCATTTTTAC--A--AA--TC----AA--TTTCATC--TTTTTGATGGCT 272
|||||||||||| ||||||| | || || || ||||||| ||||| ||||||
Sbjct 238 TTCAAAGTTTCCGTTTTTACAAACCAATTTCGGGAAAGTTTTCATCTTTTTTTTATGGCT 297
Query 273 GCTTACGCGAATTATCTCCGACTCGCACGTCTTGGAACAAGTTCATCATCAGGTGTAAAC 332
||||||||||||||||||||||||||||| |||||| || || ||||||||||||
Sbjct 298 GCTTACGCGAATTATCTCCGACTCGCACGACTTGGAGGAA---CAAGTTCAGGTGTAAAC 354
Query 333 CTGTCGACTCTCAGATCAATCGGTTATTCAAATCCAACATTTGACAAGACTCACGAGATT 392
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 355 CTGTCGACTCTCAGATCATTCGGTTATTCAAATCCAGCATTTGACAAGACTCAAGAGTTT 414
Query 393 CGTTCCTCTTCTTCTTCATCGTTAGTATCACATTCTTCTTCGTTCAGACAATTCCACGCC 452
|| ||| ||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 415 CG---CTCCTCTTCTTCATCGTTAGTAT--CA-TATTCTTCGTTCAGACAATTCCACGCC 468
Query 453 AGATTCATCTCTCAACTTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTC 512
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGATTCATATCTCAGCTTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTA 528
Query 513 GCTTTGGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCGAAGCAAGCCGAGGCAATAACC 572
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 GCTTTGGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACC 588
Query 573 GGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCACAGTTGGTTGTCTCC 632
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 589 GGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCACAGTTAGTTGTCTCC 648
Query 633 AAGGGAGAGATGCAGAAAGCTGAAATGACACAGGAATCAAACTTGTCCAAGTTCAAAAGT 692
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 649 AAGGGAGAGATGCAGAAAGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGT 708
Query 693 GAAATTAACAGTTCACTGGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTC 752
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAAATTAATAGTTCACTGGACCACCATTTCTCTTTGCTGCAACACGAGAATGAGAAACTC 768
Query 753 CGCAATGACATAGAGCGAATCCGCTCTGATATAAGACACGAGATCGACAAAGTCACAGCA 812
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 CGCAATGACATAGAGCGAATCCGCTCTGATATAAGACACGAGATCGATAAAGTCACAGCA 828
Query 813 GGACAACGGTTGGATCTGAATCTTGAAAAAGGGAGGATAAGAGATGAGTTACAAAATCAA 872
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GGACAACGGTTGGACCTGAATCTTGAAAAAGGGAGGATAAGAGATGAGTTACAAAATCAA 888
Query 873 AACGCAGAAACCTCTAACCTTACAAACAAACTTGACCGTGAGATTCACACTTTGAGAGCT 932
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACGGAGAAACCTCTAACCTTACAAACAAACTTGACCGTGAGATTCACACTTTGAGAGCT 948
Query 933 CAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACACTTGTCTCCATC 992
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 CAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATC 1008
Query 993 TCAGCAGTTGGTCTCGCTGTCCTCCGGATCGTCATGTAACTCCATCCGACGGTGCCGGTT 1052
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1009 TCAGCCGTTGGTCTCGCTGTCCTCCGGATCGTCATGTAACTCCATCTGACGGTGCCGGTT 1068
Query 1053 TTAA-GACCAACTCATCA-TCTTCCCTGtttttttAATTACGGGATGAAA-TCTTTGGTC 1109
|||| ||||||||||||| |||||||||| |||| ||||||||||||||| |||| ||||
Sbjct 1069 TTAAAGACCAACTCATCAATCTTCCCTGTCTTTT-AATTACGGGATGAAAATCTT-GGTC 1126
Query 1110 TTGTTAATTAT-T---CGTATCTTTAATGTAATTGTATTTAC--TTTTTTGTGTGAAAGA 1163
|||||||||| | ||||| |||||||||||||||||| | |||||| |||||||||
Sbjct 1127 ATGTTAATTATATATTCGTATGTTTAATGTAATTGTATTTCCCCTTTTTTATGTGAAAGA 1186
Query 1164 AATAAAGAATCACCAATCTAGTAAATTTGAACCCTTCATGTATATGA 1210
|||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1187 AATAAAGAATAACCAGTCTAGTAAATTTGAACCCTTCATGTATATGA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5