BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485463
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51100.1 | Symbols: | unknown protein; Has 48 Blast hits to... 1051 0.0
> AT3G51100.1 | Symbols: | unknown protein; Has 48 Blast hits
to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:18980263-18982291 REVERSE
LENGTH=1021
Length=1021
Score = 1051 bits (569), Expect = 0.0
Identities = 703/764 (92%), Gaps = 23/764 (3%)
Strand=Plus/Plus
Query 1 GAGAGCTAGAGAAATTTCGCGATGAACGAAGGCTCGAGCGAAGAAGTAACGAGGACGGTA 60
||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 GAGAGATAGACAAGTTCCGCGATGAACGAAGGCTCGAGCGAAGAAGTAACGAGGACGGTA 156
Query 61 ATGGAAGAGAAACCAGAACAGCAGCAGAGAGGATCTCTTGAGAAAGGAAGATCGTGCAAA 120
||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||
Sbjct 157 ATGGAAGAGAAACCAGAACAGAAACAAAGAGGATCTCTGGAGAAAGGAAGATCGTGCAAA 216
Query 121 GGCTATTTATATTACTCTTCCACTCTCAAATCCAAGGCTAAGAACCCTCGCTGCGTCGGT 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 217 GGCTATTTATATTACTCTTCCACTCTCAAATCCAAGTCTAAGAACCCTCGCTGCGTCGGA 276
Query 181 ATCCCTCGTACTCTCCGTCAAGTTCCTGATTATGTTGTTGGACAATCTGAAGCTGAAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 ATCCCTCGTACTCTCCGTCAAGTTCCTGATTATGTTGTTGGACAATCTGAAGCTGAAGCT 336
Query 241 TCTAAAGAAGGAAGGACCTTAGCTGATTTTTACTATGGATGTTTGGGATATTCCGTCTAC 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 337 TCTAAAGAAGGAAGGACCTTAGCTGATTTTTACTATGGATGTTTGGGTTATTCCGTCTAC 396
Query 301 ATGACTGATAAAGACTCATCTGCCATTAAGCAACATACAAAGACTCAACTTCCCGTTTGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ATGACTGATAAAGACTCATCTGCCATTAAGCAACATACAAAGACTCAACTTCCCGTTTGT 456
Query 361 GTCGGTCTTGAGATACTAGCAGATAGAAGAGCAGCTTCTGGCAATACTTCATCTGTTCCT 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTCGGTCTTGAGATATTAGCAGATAGAAGAGCAGCTTCTGGCAATACTTCATCTGTTCCA 516
Query 421 GCCCGTGTTCAAAGTAGAAGTGATTCTCGGGAGGTGCCTCG-GCAGCAGAACCATAAACC 479
|||||||| |||| ||||| |||||||||||||||||| | || ||| |||| || |
Sbjct 517 GCCCGTGTCCAAAATAGAAAAGATTCTCGGGAGGTGCCT-GTGCCTCAGCACCAGAA-CA 574
Query 480 AGCA-CCAGCAC-CAGC-ACCAGCCACTGCCACAAACACAGAAAATGGCTTCCTAACGAG 536
| | ||||| | | || || ||||||||||||||||||||||| |||||| |||| ||
Sbjct 575 ATAAACCAGC-CTCTGCCACT-GCCACTGCCACAAACACAGAAAACGGCTTCTTAACCAG 632
Query 537 GTTCACAAGAAACGCAAGCCTGGTAGCAGGAGGGGTGATGAAGAACATGAAGAGAGTAGG 596
||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 633 GTTCACAAGAAACGCAAACCTGGTTGCAGCAGGGGTGATGAAGAACATGAAGAGAGTTGG 692
Query 597 TAACTATGTGAAAGAAACTGTGGACGATTCCTTGGACCCATATCGGAAGCGACCAAAATG 656
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 693 TAACTATGTGAAAGAAACTGTGGATGATTCCTTGGACCCATATCGCAAGCGACCAAAATA 752
Query 657 AAGAAACTTTTTTACATTAGATGTGGAGACAA-AC-CCTCaaaaaaaaaTGACAGACAGA 714
|||||||||||| ||||||||||||||||||| | || ||||||||| |||| ||||||
Sbjct 753 AAGAAACTTTTT-ACATTAGATGTGGAGACAACAAACC-CAAAAAAAA-TGACCGACAGA 809
Query 715 CGACAGGA---GA--T-TT----GACACTTTTTTGGATTCTCTT 748
|||||||| || | || |||||||||||||||||||||
Sbjct 810 CGACAGGATATGAAATCTTATTTGACACTTTTTTGGATTCTCTT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5