BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485467
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51130.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2278 0.0
> AT3G51130.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373);
Has 269 Blast hits to 265 proteins in 123 species:
Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 82; Plants
- 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
| chr3:18994141-18997589 FORWARD LENGTH=1571
Length=1571
Score = 2278 bits (1233), Expect = 0.0
Identities = 1374/1440 (95%), Gaps = 17/1440 (1%)
Strand=Plus/Plus
Query 26 TCTTCTGTTCAAGAAACTGATCCAACAAATGAAAGATTACTCGAAGATCGGCGACAAACT 85
|||||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 51 TCTTCTATTCAGGAAATTGATCCAACAAATGAAAGATTACTCGAAGATCGGCGATAAACT 110
Query 86 GGTGATGCAGAGACCTAGACGACGATTGGAAGGCACCGCCATGGGCGCCACCGTGTTCGA 145
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 111 TGTGATGCAGAGACCTAGACGACGTTTGGAAGGCACCGCCATGGGCGCCACCGTGTTCGA 170
Query 146 TCTCCGTCCCGGCGTCGGCATCGGACCTTTCTCTATCGGGATGCCGATTTGTGAAGCATT 205
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 171 TCTCCGTCCCGGCGTCGGCATCGGACCTTTCTCTATCGGAATGCCGATTTGTGAAGCATT 230
Query 206 TGCTCAAATAGAGCAGCAGCCTAACATATATGACGTTGTTCATGTTAAATACTACGACGA 265
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 231 TGCTCAAATAGAGCAGCAGCCTAACATATATGATGTTGTTCATGTTAAATACTACGACGA 290
Query 266 GGATCCTTTGAAACTGGATGTTGTCATTAGCTTTCCGGATCATGGGTTTCATCTTCGATT 325
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 291 GGATCCTTTGAAACTGGATGTTGTTATTAGCTTTCCAGATCATGGGTTTCATCTTCGATT 350
Query 326 TGATCCCTGGTCTCAGAGGTTACGGCTTGTTGAGATATTTGATGTCAAGCGGCTTCAGAT 385
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 351 TGATCCCTGGTCTCAGAGGTTACGGCTTGTTGAAATATTTGATGTCAAGCGGCTTCAGAT 410
Query 386 GCGCTACGCCACTTCTATGATTGGGGGTCCATCAACTCTGGCCACGTTTGTCGCTGTTTA 445
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 411 GCGCTACGCCACTTCTATGATTGGGGGTCCATCAACTCTGGCAACGTTTGTGGCTGTTTA 470
Query 446 TGCACTTTTTGGACCAACCTTTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCT 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGCACTTTTTGGACCAACCTTTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCT 530
Query 506 GTTTTACCCGGGACTATCCTTCGAGTTTCCAATTCCAAACCAGTACACAGACTGCTGCCA 565
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 GTTCTACCCGGGGCTATCCTTCGAGTTTCCAATTCCAAACCAGTACACGGACTGCTGCCA 590
Query 566 TGATGGAGAAGCGGCACTACCATTAGAGTTTCCTGATGGCACCACACCAGTAACATGCCG 625
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 591 TGATGGAGAAGCGGCACTACCGTTAGAGTTTCCAGATGGCACCACACCAGTAACATGCCG 650
Query 626 GGTCTCTATATATGACAACTCAAGTGACAAAAAAGTTGGTGTCGGAAAATTGATGGATAG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GGTCTCTATATATGACAACTCAAGTGACAAAAAAGTTGGTGTCGGAAAATTGATGGATAG 710
Query 686 AGCTTCTGTTCCTCCTTTACCTCCTGGCAGTCTGTATATGGAAGAGGTCCATATCAAGCT 745
|||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||
Sbjct 711 AGCTTCTGTTCCTCCTCTACCTCCTGGCAGTCTGTATATGGAAGAAGTTCATGTCAAGCC 770
Query 746 TGGCAAGGAACTATACTTTACTGTTGGAGGCCAGCATATGCCTTTTGGTGCATCACCACA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGGCAAGGAACTATACTTTACTGTTGGAGGCCAGCATATGCCTTTTGGTGCATCACCACA 830
Query 806 GGATGTATGGACTGAATTAGGTCGACCATGTGGGATTCACCCAAAGCAGGTAGATCAAAT 865
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 831 GGATGTATGGACTGAATTAGGTCGACCTTGTGGGATCCACCCAAAGCAGGTAGATCAAAT 890
Query 866 GGTTATTCATTCCGCTTCAGATCCACGACCAAAAACAACTATCTGTGGTGATTACTTTTA 925
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 891 GGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTA 950
Query 926 CAACTATTTTACTCGTGGTTTGGACATCCTGTTTGACGGCGAGACTCACAAGGTTAAGAA 985
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 951 CAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGACTCACAAAGTTAAAAA 1010
Query 986 GTTTGTTCTTCACACCAACTATCCCGGTCATGCTGATTTCAACTCATACATAAAGTGCAA 1045
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1011 GTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAA 1070
Query 1046 CTTTGTGATTTCTGG-TGGAGAGGATGGGGCAGAAGCAAACAGAGGTGGAAACAAGATCA 1104
|||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1071 CTTTGTGATTTC-GGCTGGAGCGGATGCGGCAGAAGCAAACAGAAGTGGAAACAAGATCA 1129
Query 1105 CTCCAAGCACTAATTGGGATCAGGTCAAGGAAATACTGGGGGAATGTGGCCCAGCAGCTA 1164
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1130 CTCCAAGCACTAACTGGGATCAGGTCAAGGAAATACTCGGGGAATGTGGGCCAGCAGCTA 1189
Query 1165 TTCAGACGCAAGGCTCAACGAGCAACCCTTTTGGATCCACATATGTGTATGGCTATCAGA 1224
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1190 TTCAGACGCAAGGCTCAACGAGCAACCCTTTTGGATCTACATATGTGTATGGCTATCAGA 1249
Query 1225 ATGTTGCTTTTGAGGTGATGAAGAACGGTCATATAGCCACCATAACCTTGTTCCAGTCAT 1284
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1250 ATGTTGCTTTTGAGGTGATGAAGAACGGTCATATAGCCACTATAACCTTGTTCCAGTCAT 1309
Query 1285 GATGTGTATACCACCGCTGAGGGGCTCAAGAGGCTATCTTCAACCAGACTCTGTAAATCT 1344
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1310 GATGCGTAT-CCACCGCTGAGGGGCTCAAGATGCTATCTTCAACCAGACTCTGTAAATCT 1368
Query 1345 AACGTCACAAGAAGATACGAAAACTATGGATGATACCAAAAACTACAAGTGTTGTACAGT 1404
|||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1369 AACGTCACAAGAAGCTACGAAAACTATCGATGATACCAAAAACGACAAATGTTGTACAGT 1428
Query 1405 TG--C------CTAGTTACTATCAC--GGATTATTATTAATAACAGTTACTCTGGTTATA 1454
| | |||||||||||||| || |||| | | ||||||||| ||||||||||
Sbjct 1429 TATACATTTGTCTAGTTACTATCACCCGGGTTAT-A--A-TAACAGTTATTCTGGTTATA 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5