BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485468
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51140.1 | Symbols: | Protein of unknown function (DUF3353)... 1812 0.0
AT5G09755.1 | Symbols: | pre-tRNA | chr5:3030817-3030889 REVER... 135 9e-31
AT4G36197.1 | Symbols: | pre-tRNA | chr4:17130052-17130124 FOR... 135 9e-31
AT4G34695.1 | Symbols: | pre-tRNA | chr4:16556623-16556695 FOR... 135 9e-31
AT3G61545.1 | Symbols: | pre-tRNA | chr3:22775922-22775994 FOR... 135 9e-31
AT2G46120.1 | Symbols: | pre-tRNA | chr2:18956641-18956713 FOR... 135 9e-31
AT1G29210.1 | Symbols: | pre-tRNA | chr1:10207306-10207378 REV... 135 9e-31
AT1G30430.1 | Symbols: | pre-tRNA | chr1:10756722-10756794 FOR... 135 9e-31
AT1G75570.1 | Symbols: | pre-tRNA | chr1:28373489-28373561 REV... 135 9e-31
AT1G75650.1 | Symbols: | pre-tRNA | chr1:28407984-28408056 FOR... 135 9e-31
AT4G18725.1 | Symbols: | pre-tRNA | chr4:10302001-10302073 FOR... 130 4e-29
AT2G38030.1 | Symbols: | pre-tRNA | chr2:15916817-15916889 FOR... 130 4e-29
AT4G13445.1 | Symbols: | pre-tRNA | chr4:7814202-7814274 FORWA... 119 9e-26
AT3G51135.1 | Symbols: | pre-tRNA | chr3:18997643-18997715 REV... 119 9e-26
> AT3G51140.1 | Symbols: | Protein of unknown function (DUF3353)
| chr3:18997600-18999904 FORWARD LENGTH=1636
Length=1636
Score = 1812 bits (981), Expect = 0.0
Identities = 1261/1388 (91%), Gaps = 52/1388 (4%)
Strand=Plus/Plus
Query 88 CTTCTATCCGTTGCGTAGCAAGGTTTTGTCTTTCGTGTATGGTTCCGGGAAGGAAAAGGG 147
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 188 CTTCTATCCGTTGCGTAGCAAGGTTTTGTCTTTCGTGTATGGTTCCGGGAAGG--AA--- 242
Query 148 AAGTGGTGTTGTGGATTGCTTTCATCGGCGATAAGTCTCTTCTCCTCTGGGATTGAGGTT 207
||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AAG-GG-GAAGTGGATTGTTTTCATCGGCGATAAGTCTCTTCTCCTCTGGGATTGAGGTT 300
Query 208 GGTGGTGTGAGGGAAAGCTTCGGTAGTTAGAGATGAATGCGTCCGGGTTAACTGTTACTC 267
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GGTGGTGTGAGGTAAAGCTTCGGTAGTTAGAGATGAATGCGTCCGGCTTAACTGTTACTC 360
Query 268 CGCCCAGATTTCACTTTCGATGGCGTTCAGATCGTTTCGGTACATCTCAGAGAAGCTCTC 327
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 361 CGCCCAGATTTCACTTTCGATGGCGTTCTGATCGTTTTGGTACATCTCAGAGAAGCTCTC 420
Query 328 AAGCTTTTACTGTTCTTAGCAAACTGAATAATCGAAGTTCCCCTTGGCCTGTTCTTAAAA 387
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 421 AAGCTTTTACTGTTCTTAGCAAATTGAATAATCGAAATTCCGCTTGGCCTGTTCTTAAAA 480
Query 388 GTTCTTGTTTGGCACTTCCTACGCAAAGAAGCAATGCTATGATCACTCGTGCCATGGGTG 447
||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 481 GTTCTCGTTTGGCGCTTCCTACACAAAGAAGAAATGCTATGATCACTCGTGCCATGAGTG 540
Query 448 CTTCCTTTGGTGATATGGCAGACCATTCAACTGGTTCAGCTGTCTTTCCTCGGATCAATG 507
||||||||||||||||||||||| |||| | | | ||| |||| |||||||||||||
Sbjct 541 CTTCCTTTGGTGATATGGCAGACGATTC-A---G--CTGCTATCTTCCCTCGGATCAATG 594
Query 508 TCAAAGACCCATATAAACGGCTTGGGATAAGCAGGATGGCCTCAGAGGACGAGATTCAAG 567
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 595 TCAAAGACCCATATAAACGGCTTGGGATAAGCCGGATGGCCTCAGAGGATGAGATTCAAG 654
Query 568 GAGCGAGGAACTTTCTCATTCAGCAATACGCAGGGCACAAACCCAGTGTTGATGCAATCG 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAGCGAGGAACTTTCTCATTCAGCAATACGCAGGGCACAAACCCAGTGTTGATGCAATCG 714
Query 628 AATCAGCTCATGACAAGATTATCATGCAGAAGTTTCATGAGCGGAAAAACCCCAAGATTG 687
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 AATCAGCTCATGACAAGATTATCATGCAGAAGTTTCATGAGAGGAAAAACCCCAAGATTG 774
Query 688 ACATATCTAAAAAGGTCCGCCAAGTGAGGCAGTCCAAAGTTGTCAACTTTGTTTTCGAGA 747
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACATATCGAAAAAGGTTCGCCAAGTGAGGCAGTCCAAAGTTGTCAACTTTGTTTTCGAGA 834
Query 748 GATTCCAAACTCCTCCCACTGCAGTCCTTGTCAAAACAGCAGCCACGTTTGCAGTTCTTG 807
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 835 GATTCCAAACTCCTCCCAATGCAGTCCTTGTCAAAACAGCAGTCACGTTTGCAGTTCTTG 894
Query 808 GCATTCTAACCGTTCTGTTCCCGACAGAAGAAGGACCGACTTTGCAGGTTGCGTTATCAC 867
|| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 895 GCGTTCTAACCGTTCTGTTCCCGACAGAAGAAGGACCGACCTTGCAGGTTTTGTTATCAC 954
Query 868 TAATAGCTACCTTTTACTTCATCCACCAAAGGCTGAAGAAGAAGCTCTGGACTTTCCTTT 927
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 TAATAGCTACCTTTTACTTCATCCACCAAAGGCTCCAGAAGAAGCTCTGGACTTTCCTTT 1014
Query 928 ACGGGACCGG-AGCTTTCATCTTCTCGTGGCTGGTTGGGACTTTCTTGATGGTATCTGTG 986
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ACGG-AGCGGGAGCTTTCATCTTCTCGTGGCTGGTTGGGACTTTCTTGATGGTATCTGTG 1073
Query 987 ATCCCACCGTTCATCAAAGGACCAAGAGGTTTCGAAGTCATGTCTTCGCTCCTAAGCTAC 1046
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 ATCCCACCGTTCATCAAAGGACCAAGAGGTTTTGAAGTCATGTCTTCGCTCCTAAGCTAT 1133
Query 1047 GTTTTGCTTTGGGTGGCTTCGAGCTATCTCCGGTAGCGTTCTAGCTATTTTCTTTTCCCC 1106
|||||||||||||| |||||||| || |||||||||||| |||||| |||||||||||||
Sbjct 1134 GTTTTGCTTTGGGTCGCTTCGAGTTACCTCCGGTAGCGTGCTAGCTTTTTTCTTTTCCCC 1193
Query 1107 TTCTTTTGGGTCACAAATTCTAGTGTTATCTCGGATATATGaaaa-a-a--aa-aT-GCA 1160
||||||||| || |||||| |||||||||||||||||||||||| | | || | | |
Sbjct 1194 GTCTTTTGGGCCAGAAATTCAAGTGTTATCTCGGATATATGAAAACACACGAACAGAGAA 1253
Query 1161 ----T-CATC-TTTTCATGTGACATagagagagagagagagaga--TATGATTTTTGGTC 1212
| |||| ||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 1254 AAAATGCATCATTTTCATGTGACAGAGAGAGAGAGAGAGAGAGAGATATGATTTGTGGTC 1313
Query 1213 TTGGAGTTGCTT-TTTCACGAAGACCTCCCTAACTTTCAAAGCTCAGTTTCCAAGTTGAC 1271
||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1314 TTGGAGTTG-TTATTTCACGGAGACCTCATTAACTTTCAAAGCTCAGTTTCCAAGTTGTG 1372
Query 1272 GATTTGAGGaaaaaaaaGTAAGCGTTGATTACGGAAAGTAGTCTGATT-TACCC--ATTG 1328
| | | ||| || |||||| |||||||||||||| ||||| ||| || | |||
Sbjct 1373 GCTACAAACAAAGAATAGTAAGAGTTGATTACGGAAATTAGTCGGATACTAGTCTGATT- 1431
Query 1329 TTAAAAGAAAAATAGGAAACATGGCCTCAT--CATCATCATGGGCTGTCTCATA-AT--T 1383
| | | ||| |||||||||||||||||| || ||||||| ||||||||||| || |
Sbjct 1432 TCATAGGAAT--TAGGAAACATGGCCTCATAGCA-CATCATGTGCTGTCTCATACATAAT 1488
Query 1384 A-CTATGGCTGCATGGTTTTGTCCATGGTCTCATACTCTCATTACATGTGCATGGCCCTC 1442
| ||||||||||||| |||||||||||| ||||| | || | ||||||||||||||
Sbjct 1489 AACTATGGCTGCATGATTTTGTCCATGGCCTCAT--T---AT-A--TGTGCATGGCCCTC 1540
Query 1443 TCATTTAT 1450
| ||||||
Sbjct 1541 TTATTTAT 1548
Score = 141 bits (76), Expect = 2e-32
Identities = 84/88 (95%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaGCTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 AAAAAAAGCTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCT 95
Query 61 GACCAGCTAGACTACAACGGATTGTTGC 88
|||||||||||||| ||||| ||||||
Sbjct 96 AACCAGCTAGACTACGACGGAATGTTGC 123
> AT5G09755.1 | Symbols: | pre-tRNA | chr5:3030817-3030889 REVERSE
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT4G36197.1 | Symbols: | pre-tRNA | chr4:17130052-17130124 FORWARD
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT4G34695.1 | Symbols: | pre-tRNA | chr4:16556623-16556695 FORWARD
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT3G61545.1 | Symbols: | pre-tRNA | chr3:22775922-22775994 FORWARD
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT2G46120.1 | Symbols: | pre-tRNA | chr2:18956641-18956713 FORWARD
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT1G29210.1 | Symbols: | pre-tRNA | chr1:10207306-10207378 REVERSE
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT1G30430.1 | Symbols: | pre-tRNA | chr1:10756722-10756794 FORWARD
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT1G75570.1 | Symbols: | pre-tRNA | chr1:28373489-28373561 REVERSE
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT1G75650.1 | Symbols: | pre-tRNA | chr1:28407984-28408056 FORWARD
LENGTH=73
Length=73
Score = 135 bits (73), Expect = 9e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT4G18725.1 | Symbols: | pre-tRNA | chr4:10302001-10302073 FORWARD
LENGTH=73
Length=73
Score = 130 bits (70), Expect = 4e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTTGGGTGAGAGCCGAGTATCCTGACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT2G38030.1 | Symbols: | pre-tRNA | chr2:15916817-15916889 FORWARD
LENGTH=73
Length=73
Score = 130 bits (70), Expect = 4e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTAACCAGCT 14
Query 69 AGACTACAACGGA 81
|||||||||||||
Sbjct 13 AGACTACAACGGA 1
> AT4G13445.1 | Symbols: | pre-tRNA | chr4:7814202-7814274 FORWARD
LENGTH=73
Length=73
Score = 119 bits (64), Expect = 9e-26
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 73 CTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTAACCAGCT 14
Query 69 AGACTACAACGGA 81
||||||| |||||
Sbjct 13 AGACTACGACGGA 1
> AT3G51135.1 | Symbols: | pre-tRNA | chr3:18997643-18997715 REVERSE
LENGTH=73
Length=73
Score = 119 bits (64), Expect = 9e-26
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 9 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGACCAGCT 68
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 73 CTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTAACCAGCT 14
Query 69 AGACTACAACGGA 81
||||||| |||||
Sbjct 13 AGACTACGACGGA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5