BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485471
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51180.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2307 0.0
> AT3G51180.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:19013390-19016185 FORWARD LENGTH=2039
Length=2039
Score = 2307 bits (1249), Expect = 0.0
Identities = 1546/1683 (92%), Gaps = 45/1683 (3%)
Strand=Plus/Plus
Query 219 ATGAAGAGATCGACGAAACCCAGGGTTTCATGGCCACCAGGTCCTAAGCTTTGTCAGGTT 278
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 340 ATGAAGAGATCGAAGAAACCCAGAGTTTCATGGCCACCAGGTCCTAAGCTTTGTCAGGTT 399
Query 279 AAGGTTTTTCGAACAGAGGATTGTCCGGCCAAAGTTGCCTCTCAGCCTCAACGTCATAGC 338
|||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||
Sbjct 400 AAGGTTTTTCGAACAGAGGACAGTCCTGCCAATGTAGCCTCTCAGCCTCAACGTCATAGC 459
Query 339 TACCCAAAGCTATCCTCTGGGAAACCTCGAGGACCAGATCTTCCACCTGGTTTCGAAGGA 398
|| || | | ||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 460 TA-CC----C-A---TCTAGGAAACCTCGAGGGCCAGATCTTCCACCTGGTTTTGAAGGA 510
Query 399 AATCACTATGCAGTTAAGCC--------CAATC-TTCCTCGGATCAAATGGAAACGACCT 449
|||||||||||||||||||| ||| | ||||||| ||||||||||||||||||
Sbjct 511 AATCACTATGCAGTTAAGCCTAATGTTTCAAACATTCCTCGCATCAAATGGAAACGACCT 570
Query 450 CCTTCCAAGTTCACTGTCAATGATGCTTGGCTGGTTGGAGGTGGTGGCGAGAGCACTGAA 509
||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||| | |||
Sbjct 571 CCTCCCAAGTTCTCTGTCAATGATACTTGGCTGGTTGGATGTGGTGGCGGGAGCTCAGAA 630
Query 510 AGGCGAACTGAAAACTTGAGGAGTTCAAAAGTTTTGGAAGCTATCTATCCGCATCGCTCT 569
||| || |||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 631 TGGCAAAATGAAAACTTGAGGATTTCAAAAGTGCTGGAAGCTATCTATCCTCATCGCTCT 690
Query 570 GCCATCCCTTCTCGACCCTCTGTTTCACCTGTTGTGGAAGCTGAATGCTTTGATGACAGC 629
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 691 GCCATCCCTTCTCGACCCTCTGTTTCACCGGCTGTGGAAGCTGAATGCTTTGATGACAGC 750
Query 630 AAAACTCCTGCCATTCGTCTCACTCCAATTGAAGACGAGAATGAA---TCTTCAGAGGAA 686
|||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct 751 AAAACTCCTGCCATTCGTCTCACTCCTATTGAAGACGAGAGTGAATCTTCTTCAGAGGAG 810
Query 687 TCATCCCACAGTGCGGTTGAATCCGGTTTTACCGCCAACAAGCAAGGTCAGTTGGAGACC 746
|||||| ||||| ||||||||| ||| ||||||| |||||||| |||||||||||||||
Sbjct 811 TCATCCAACAGTAAGGTTGAATCAGGTGTTACCGCAAACAAGCAGGGTCAGTTGGAGACC 870
Query 747 AATCCTCCCTGTTCAACCCAAGAACAGGTTTCTGGTCTTACTGGTCTTGCACCAGACTTG 806
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AAACCTCTATGTTCAACCCAAGAACAGGTTTCTGGTCTTACTGGTCTTGCACCAGACTTG 930
Query 807 AGTCTGGCTGCTTCTGCAGCTCTGACTGCACTGATGAAAACCAAGGAACAGGGGAGTTTG 866
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 931 AGTCTGGCTGCTTCTGCAGCTCTGACTGCACTGATGAAAACCAAGGAACAAGGGAGTTTG 990
Query 867 GTTGATACTGATCTACTTATCAAGTTCCTCAGCGACCCGAAAATT-ATCAAGAATCTGAT 925
|| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 991 GTCGATACTGAGCTACTTATCAAGTTCCTCAGCGACCC-AAAATTAATCAAGAATCTTAT 1049
Query 926 CACTGACACATCAGGTAAATCCTCTGAAACTAAGAATCAGCCCGTTGACACTAACATCAA 985
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1050 CACTGACACATCAGGTAAATCCTCTGAAACTAAGAATCAGCCCATTGTCACTAACATCAA 1109
Query 986 CTCTGCTACTAGACTTGTT---CA----G-CA-ACCTGTCACCGCCTCACCCATGGCTAG 1036
|||||||||||||| |||| || | || |||||||||||||||||||||||||
Sbjct 1110 CTCTGCTACTAGACCTGTTCCGCAGCCTGTCAGTGCTGTCACCGCCTCACCCATGGCTAG 1169
Query 1037 AAAGCCGCAGCCAGTAATAATACCTCAAGAACACAGTGTTGCAGTTTCTCGGTCTTTTAC 1096
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 AAAGCCGCAGCCAGTGATAATACCTCAAGAACACAGTGTTGCAGTTTCTCGGTCTTTTAC 1229
Query 1097 TAACCCTGAGAGACGAGTATCTCCTCCCAAGCCTGCAAATGGAAACATATCCCCACCTAA 1156
|||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1230 TAACCCTGAGAGGCGAGTATCACCTCCCAAGCCTGTAAATGGAAGCATATCCCCACCTAA 1289
Query 1157 GCCTATGAA-TGGAAAACCGTCTAGTATACC-A-----GTTCATTTCCATGTCGGTATAG 1209
|||||| || ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1290 GCCTAT-AACTGGAAAACCATCTAGTATACCAATGCCCGTTCATTTCCATGTCGGTATAG 1348
Query 1210 CTAAAGAACAACCTCAGCCTGCTCGGTTCCCATCGAGTTCTCTGCCAATGAACCTTAACC 1269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CTAAAGAACAACCTCAGCCTGCTCGGTTCCCATCGAGTTCTCTGCCAATGAACCTTAACT 1408
Query 1270 TCCACAGACCTCAAAATGTTTTCTCAGAACCAAAGGTAATAGTAAATCCTCAACCCCAAC 1329
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TCCACCGACCTCCAAATGTTTTCTCAGAACCAAAGGTAATAGTAAATCCTCAACCCCAAC 1468
Query 1330 ACCAACCCTATTCCGCATTCCGTACTTCTGAAATGAACAATGTTCAATCATCAATTGGAC 1389
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1469 ACCAACCCTATTCCGCATTCCGTACATCTGAAATGAACTATGTTCAATCATCAATTGGAC 1528
Query 1390 TTGGAAGGGGTCCTCACACCGGTTTCAATTCTTATCCAATGAACTTAAACCGGGCAGATG 1449
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1529 TTGGAAGGGGTCCTCAAACCGGTTTCAATTCTTATCCAATGAACTTTAGCCGGGCAGATG 1588
Query 1450 TTATTACTGGTAGAGCTAAACCGGTAGTACAACCTATGAAGGGTCTAGACTATTTCAAGA 1509
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1589 CAATT---GGTAGCGCTAAACCAGTAGTACAACCTATGAAGGGTCTAGACTATTTCAAAA 1645
Query 1510 ACCTTATAAGGGAACATGGGACAGATAATCATGAAACTAAGCAATACCATTCACAAACTG 1569
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1646 ACCTTATAAGGGAACATGGCACAGATAATCATGAAACTAACCAATACCATTCACAAACTG 1705
Query 1570 GAATATTCAATGGACGCCTTGATAATAATATTAAGATTCAGCAACAATGTATCTACTTTG 1629
|||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1706 GAATATTCAACGGACGCATTGATAATAATAATAAGATTCATCAACAATGTATCTACTTTG 1765
Query 1630 GCACTGTGAGTGGATGTAAGCTGGGAGATAGTTGCGTCTATGTTCATGACCGGTTTAGGC 1689
|||||| || ||||||||| ||||||| |||||| ||||||||||||||||| |||||
Sbjct 1766 GCACTGCGAATGGATGTAATATGGGAGACAGTTGCACCTATGTTCATGACCGGTATAGGC 1825
Query 1690 CCAACTTTGAGGCCGAGGCTCCGAGGGCTAAGAGAATGAAGTTTCGAAGGTATGAGAAAA 1749
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1826 CCAACTTTGAGGCCGCGGCTCCGAGGGCTAAGAGAATGAAGTTTGGAAGGTATGAGAGAA 1885
Query 1750 ATAAGTTTT-GAACATaaaaaaaaaaTTAGAGTTCATTTTTATAGTCTTGTCTATCACTG 1808
|| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1886 ATG-GTTTTTGAACATAAAAAAAAAAATAGAGTTCACTTTTATAGTCTTGTCTATCACTG 1944
Query 1809 GTTAAGGAACAAAACCTGAGGTGATACAACTTTCAATTTTGATCAATTTGTGTTTACCAA 1868
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1945 GTTAAGGAACAAAACCTGAGGTGATACAACTTTCAATTTTGATCAATTTGTGCGCACCAA 2004
Query 1869 TTT 1871
|||
Sbjct 2005 TTT 2007
Score = 174 bits (94), Expect = 2e-42
Identities = 164/194 (85%), Gaps = 20/194 (10%)
Strand=Plus/Plus
Query 41 TCATCAATCATCACCCAAATCCTCCCGCCGTCGTCTCTTCCTTGTTTCTG-TTT-TCTCT 98
||||| ||||||||||||||||| |||||| |||||||| |||||||| | ||| |||||
Sbjct 77 TCATC-ATCATCACCCAAATCCTTCCGCCGACGTCTCTTTCTTGTTTCCGTTTTCTCTCT 135
Query 99 -C--TC-C-GA-TC-T-C-T--TATTGACCAAAATCCGTAATCAAAATCCTTCGAATCTC 147
| || | || || | | | |||||||| || ||| ||||||||||||||||||||||
Sbjct 136 CCGATCTCTGACTCATCCATCGTATTGACC-AATTCCCTAATCAAAATCCTTCGAATCTC 194
Query 148 AATTTGTTTCGTTTAAGAAATCTGTAGATCTAGCAGAAAAGACTC-T-TTCTCTATCTGA 205
|||||| |||| |||||||||||||||||||||||||||| | || | || | ||||||
Sbjct 195 AATTTGCTTCG-TTAAGAAATCTGTAGATCTAGCAGAAAAAATTCATATT-TG-ATCTGA 251
Query 206 ATCTGATaaaaaaa 219
||||||||||||||
Sbjct 252 ATCTGATAAAAAAA 265
Score = 78.7 bits (42), Expect = 2e-13
Identities = 51/55 (93%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 1 aaaa-aaaaaGAGAAGAGAAGAGACAGTTGTTAGGGTTTTCTCATCAATCA-TCA 53
|||| ||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 21 AAAAGAAAAAGAAAATAGAAGAGACAGTTGTTAGGGTTTTCTCATCAATCAATCA 75
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5