BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485473
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51220.1 | Symbols: | Plant protein of unknown function (DU... 1085 0.0
> AT3G51220.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr3:19021734-19022637 REVERSE LENGTH=795
Length=795
Score = 1085 bits (587), Expect = 0.0
Identities = 689/737 (93%), Gaps = 12/737 (2%)
Strand=Plus/Plus
Query 34 ATGGTTCGCGCAGAGATCGAAACCGGAGCTCCTTTCCGGTCTGTTAAAGAGGCTGTCACT 93
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 26 ATGGTTCGGGCCGAGATCGAAACCGGAGCTCCTTTCCGTTCTGTTAAAGAGGCTGTTACT 85
Query 94 CTCTTCGGCGAGAGAATTCTTCTCGGAGATAATTACATCAGCAAGTCCGTCGAGAGAAAC 153
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 86 CTTTTCGGCGAGAGAATTCTTCTCGGAGATAATTACATCAGCAAGTCCGTAGAGAGAAGC 145
Query 154 AGCTGCAAAAGCATCCAAGATGAGCTGGTGGAAGCAAAGGAGAATCTGAAGAAAGCTGAG 213
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 146 AGTTGCAAAAGCATTCAAGATGAGCTGGTTGAAGCAAAGGAGAATCTGAAGAAAGCTGAG 205
Query 214 GAAGAGAACAAGGCTTTGTCTCAGCTTATCGAAAGCCTAACACAAGAGCTTGAAACCGCT 273
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 206 GAAGAGAACAAGGTTTTGTCTCAGCTTATCGAAAGCCTTACACAAGAGCTTGAAACCACT 265
Query 274 AAAGAAAAGCTTAATCACTCACTTAGAAAATTCCCGGAACACCCTCAAGTCGAAGATGAC 333
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 266 AAAGAAAAGCTTAATCACTCACTCAGAAATTTCCCAGAACACCCTCAAGTCGAAGATGAC 325
Query 334 CTCAAATTCATAGAGGAATCCACGGTTAACGAACCGGACAACATAACCGAGATCAAGATG 393
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CTCAAGTTTATAGAGGAATCCACGGTTAACGAACCGGACAACATAACCGAGATCAAGATG 385
Query 394 AACCGGTTTGATGGAAATGAAGTGTATGGTGATCGTCTAGAGAGGAGGCGTTCGGTGAAG 453
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 386 AACCGGTTTGATCGAAATGAAGTGTATGGTGATCGTCTAGAGAAGAGGCGTTCGGTGAAG 445
Query 454 TTTGCTAACCCACCATTGTTAACAAAGGTCATTGTGGGCAAAGAGGAGAAGAACCAAGTT 513
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 446 TTTGCTAACCCACCATTGTTAACGAAGGTCATTGTGGGCAAAGAGGAGAAGAACCAAGTT 505
Query 514 ATGGTGAAGAAGCAGACGAAGAAGATGAAGCCATTGGTTCCATTGGCTGCTTGGCTCTTT 573
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 ATGGTTAAGAAGCAGACGAAGAAGATGAAGCCATTGGTTCCATTGGCTGCTTGGCTCTTT 565
Query 574 GCAAGAAACCGGTCTAGTTAAACCAC---TTTAGAGATCCTCATCTCGTGTTTGGTACTC 630
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 566 GCAAGAAACCGGTCTAGTTAAACCACCACTTTAGAGATCCTCATCTCGTGTTCAGTACTC 625
Query 631 ATGCGTGCCTTGCGAGTTAAGAAATAATATCCATGAGTTAATTGTTTTTAATTTGG-GAA 689
||||||||||| | |||||||||||||||||| ||| ||||||||| ||||| || ||
Sbjct 626 ATGCGTGCCTTACAAGTTAAGAAATAATATCCCTGAATTAATTGTTCTTAATACGGAGA- 684
Query 690 TTCATTCAA-TTAAGATTTTGTTACATATTAATAAACAATTGTGTACTTATCATAAAGTC 748
||||||||| ||| ||| |||||||| |||| ||||||| ||| ||||||| ||||||
Sbjct 685 TTCATTCAAATTA-GATCTTGTTACAAATTACTAAACAA--GTG--CTTATCACAAAGTC 739
Query 749 TTGTTGGGATAAA-TAT 764
||||| ||||||| |||
Sbjct 740 TTGTTTGGATAAACTAT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5