BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485480
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51290.1 | Symbols: | Protein of unknown function (DUF630) ... 1967 0.0
> AT3G51290.1 | Symbols: | Protein of unknown function (DUF630)
;Protein of unknown function (DUF632) | chr3:19039980-19042569
FORWARD LENGTH=2037
Length=2037
Score = 1967 bits (1065), Expect = 0.0
Identities = 1215/1285 (95%), Gaps = 20/1285 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGTCAGTCAAGAATAGATAGCAAAGAGATAGTGTCTCGTTGTAAAGCAAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTTGTCAGTCAAGAATAGATAGCAAAGAGATAGTGTCTCGTTGTAAAGCAAGG 60
Query 61 AAGAGATACTTGAAACATCTTGTTAAAGCTAGACAAACTCTCTCTGTTTCTCACGCGCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAGATACTTGAAACATCTTGTTAAAGCTAGACAAACTCTCTCTGTTTCTCACGCGCTT 120
Query 121 TATCTCCGTTCTCTACGCGCCGTCGGCTCTTCCCTTGTTCActtctcttccaaagaaact 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 TATCTCCGTTCTCTACGCGCCGTTGGCTCTTCCCTTGTTCACTTCTCTTCCAAAGAGACT 180
Query 181 cctcttcacctccaccacaatcctccttctccttctcctcctcctcctccgccgccgcgt 240
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 181 CCTCTTCACCTCCACCACAACCCTCCGTCTCCTTCTCCTCCTCCTCCACCGCCGCCGCGC 240
Query 241 cctcctcctccgcctcTAAGCCCTGGCTCTGAAACCACCACATGGaccaccaccaccact 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CCTCCTCCTCCTCCTCTAAGCCCTGGCTCTGAAACCACCACATGGACCACCACCACTACT 300
Query 301 tcctctgctcttccgcctcctcctcctccgccacctccacctcctccgcctTCTTCTACA 360
||||||| |||||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct 301 TCCTCTGTTCTTCCTCCTCCTCCGCCGCCACCACCTCCTCCTCCTCCGCCTTCTTCTACA 360
Query 361 TGGGACTTTTGGGATCCGTTTATACCGCCGCCTCCTTCTTCCTCCGAGGAAGAGTGGGAG 420
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 361 TGGGACTTCTGGGATCCGTTTATACCGCCGCCTCCTTCTTCCTCTGAGGAAGAATGGGAG 420
Query 421 GAGGAAACAACCACCGCAACAAGAACCGCAACAGGAACCGGAACTGGCTCTGACGCTGCT 480
|| || ||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 421 GAAGAGACAACCACCGCGACAAGAACCGCAACAGGAAC------TGGCTCTGATGCTGCT 474
Query 481 GTGACGACGGCTCCGACGACAGCTACTCCTCAAGCTTCGTCTGTAGTGAGTGGATTCTCT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 475 GTGACGACGGCTCCGACGACAGCTACTCCTCAAGCTTCGTCTGTTGTGAGTGGATTCTCT 534
Query 541 AAAGATACAATGACGACGACTACGACGGGAAGTGAGTTAGCAGTTGTGGTGTCAAGGAAT 600
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||
Sbjct 535 AAAGATACAATGACGACGACGACGACTGGAAGTGAGCTAGCAGTTGTGGTGTCGAGGAAT 594
Query 601 GGTAAAGATCTTATGGAGATTATTAAAGAAGTCGATGAATATTTCCTTAAAGCTGCAGAT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGTAAAGATCTAATGGAGATTATTAAAGAAGTCGATGAATATTTCCTTAAAGCTGCAGAT 654
Query 661 TCTGGTGCACCTCTCTCTTCTCTTCTTGAAATCTCAACCTCTATCACTGACTTTACTTTG 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 655 TCTGGTGCACCTCTCTCTTCTCTCCTTGAAATCTCAACCTCTATCACTGACTTTTCT--G 712
Query 721 TGTC-TGTCT---TCAGGGAAAATGTA---TAGTA--A-CTACGAATGTAATCTGAATCC 770
||| | || |||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 713 -GTCAT-TCCAAATCAGGGAAAATGTACAGTAGTAGTAACTACGAATGTAATCTGAATCC 770
Query 771 GACGTCGTTTTGGACAAGAGCATTTGCTCCTCCTAAGTTGAATGAATACAGAAACGCAGG 830
|||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||
Sbjct 771 GACGTCGTTTTGGACAAGGGGATTTGCTCCTTCTAAGTTGAGTGAATACAGAAACGCAGG 830
Query 831 AGGAGTAACTGGAGGAAATTGCATTGTTGGTAGCCATTCCTCCACAGTGGATAGACTCTA 890
|||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 831 AGGAGTAATTGGAGGAAATTGCATTGTTGGTAGCCATTCATCTACAGTGGACAGACTCTA 890
Query 891 TGCTTGGGAGAAGAAGCTTTATCAGGAGGTCAAGAATGCAGAGAGCATAAAGATGGAGCA 950
||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 891 TGCTTGGGAGAAGAAACTTTATCAAGAGGTCAAGTATGCAGAGAGCATAAAGATGGATCA 950
Query 951 TGAGAAGAAAGTGGAGCAAGTGAGGAGGCTTGAGATGAAGAGAGCTGAGTATGTCAAGAC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGAGAAGAAAGTGGAGCAAGTGAGGAGGCTTGAGATGAAGAGAGCTGAGTATGTCAAGAC 1010
Query 1011 TGAGAAGGCTAAGAAAGACGTCGAGAAGTTAGAATCTCAGCTCTCAGTATCTTCACAAGC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TGAGAAGGCTAAGAAAGACGTCGAGAAGTTAGAATCTCAGCTCTCAGTATCTTCACAAGC 1070
Query 1071 CATCCAGAGCGCTTCTAACGAGATCATCAAGCTCAGAGAGACCGAGCTTTATCCTCAGCT 1130
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1071 CATCCAAAGCGCCTCTAACGAGATCATCAAGCTCAGAGAGACCGAGCTTTACCCTCAGCT 1130
Query 1131 CGTAGAGCTTGTTAAAGGGAGTATGTACGAGAGCCACCAGGTTCAAACCCATATTGTTCA 1190
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1131 TGTCGAGCTTGTTAAAGGGAGTATGTACGAGAGCCACCAGGTTCAAACCCATATTGTGCA 1190
Query 1191 GCAGCTTAAGTACCTTAACACCATCCCCTCCACTGAACCCACATCCGAGCTTCACCGACA 1250
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1191 GCAGCTTAAGTACCTTAACACCATCCCCTCCACTGAACCAACATCTGAGCTTCACCGACA 1250
Query 1251 ATCAACTCTTCAGCTTGAGCTCGAG 1275
|||||||||||||||||||||||||
Sbjct 1251 ATCAACTCTTCAGCTTGAGCTCGAG 1275
Score = 881 bits (477), Expect = 0.0
Identities = 528/553 (95%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 1274 AGTTCAGCAAGAATCCGCTTGTTAGGAGTAGCTACGAGTCAAAAATCTACAGTTTCTGCG 1333
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1370 AGTTCAGCAAGAATCCACTTGTTAGGAGTAGCTACGAGTCAAAGATCTACAGCTTCTGCG 1429
Query 1334 AGGAATGGCATTTGGCTATTGATC-GGATCCCTGATAAAGTAGCATCTGAAGGGATCAAA 1392
||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1430 AGGAATGGCATTTAGCTATTGA-CAGGATCCCTGATAAAGTAGCATCTGAAGGGATCAAA 1488
Query 1393 AGCTTTTTAACCGCAGTCCATGGAATTGTGGCTCAACAGGCGGACGAGCATAAGCAGAAG 1452
|||||| | || |||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1489 AGCTTTCTGACAGCAGTCCATGGAATTGTGGCTCAACAAGCCGACGAGCATAAGCAAAAG 1548
Query 1453 AAGAGAACAGAATCCATGTTAAAAGATTTTGAGAAGAAATCGGCTGCGCTGAGAGCGCTT 1512
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1549 AAGAGAACAGAATCCATGTTAAAAGATTTCGAGAAGAAATCGGCTTCGCTGAGAGCGCTT 1608
Query 1513 GAGAGCAAGTATAGTCCATACTCGGTGCCTGAGAGCAGGAAAAAGAACCCGGTGATAGAG 1572
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1609 GAGAGCAAGTATAGTCCATACTCGGTACCTGAGAGTAGGAAAAAGAACCCGGTGATAGAG 1668
Query 1573 AAGAGAGTAAAGGTTGAGATGCTGAAAGGAAAGGCAGAAGAAGAGAAAAGTAAGCATGAG 1632
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1669 AAGAGAGTAAAGGTTGAGATGCTAAAAGGAAAAGCAGAAGAAGAGAAAAGTAAGCATGAG 1728
Query 1633 AAGTCAGTGAGCGTGAGTAGAGCCATGACGCTAAATAACTTGCAGATGGGATTCCCTCAT 1692
||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1729 AAGTCAGTGAGTGTGACTAGAGCCATGACTCTAAATAACTTGCAGATGGGTTTCCCTCAT 1788
Query 1693 GTGTTTCAGGCAATGGTTGGGTTTTCAAGTGTGTGTATGCAAGCCTTTGAGTCTGTGTAC 1752
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GTCTTTCAGGCAATGGTTGGGTTTTCAAGTGTGTGTATGCAAGCCTTTGAGTCTGTGTAC 1848
Query 1753 AACCAAGCTAAGAGCATCGGTGAGGATCAAGAGGAGGTCAAGAGGTTGCTTCCTTAAGGA 1812
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1849 AACCAAGCTAAGAGCATCGGTGAGGATCAAGAGGAGGTTAAGAGGTTGCTTCCTTAAAGA 1908
Query 1813 GAGAAAGACAAAT 1825
|||||||||||||
Sbjct 1909 GAGAAAGACAAAT 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5