BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485482
Length=2579
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51310.1 | Symbols: VPS35C | VPS35 homolog C | chr3:19044480... 4115 0.0
> AT3G51310.1 | Symbols: VPS35C | VPS35 homolog C | chr3:19044480-19049382
REVERSE LENGTH=2588
Length=2588
Score = 4115 bits (2228), Expect = 0.0
Identities = 2478/2596 (95%), Gaps = 28/2596 (1%)
Strand=Plus/Plus
Query 1 GAAAATTCGGTCAAAATTGAGACTT-TCTCTGTAGAGTAAAGTAGTGA-GAA-ACAGAAT 57
||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||
Sbjct 4 GAAAATTCGGTCAAAATTGAGACTTCTCTCTGTAGAGTAAAGTAGTGAGGAACATAGAAT 63
Query 58 GATCGCCGACGACGATGAGAAGTGGCTTTCCGCCGCCATCGCCGCCGTTAAGCAAAATGC 117
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 64 GATCGCCGACGACGATGAGAAGTGGCTTGCCGCCGCAATCGCCGCCGTTAAGCAAAATGC 123
Query 118 TTTCTATATGCAGCGCGCTATCGACTCCAACAATCTGAAAGACGCTCTAAAGTTTTCTGC 177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 TTTCTATATGCAGCGCGCTATCGACTCCAACAATCTCAAAGACGCTCTAAAGTTTTCTGC 183
Query 178 TCAAATGCTCAGCGAGCTTCGTACTTCCAAGCTTTCTCCTCATAAATACTATGAACTCTA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TCAAATGCTCAGCGAGCTTCGTACTTCCAAGCTTTCTCCTCATAAATACTATGAACTCTA 243
Query 238 TATTCGAGTTTTTAATGAACTGGGGACTTTGGAGATATTCTTCAAGGAAGAGACAGGG-C 296
||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 244 TATGCGAGTTTTTAATGAATTGGGGACTTTGGAGATATTCTTCAAGGAAGAGAC-GGGAC 302
Query 297 GCGGTTGCTCCATTGCGGAGCTTTACGAGTTAGTGCAGCATGCCGGTAACATTTTGCCAA 356
| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 303 GTGGTTGCTCCATCGCAGAGCTCTACGAGTTAGTTCAGCATGCCGGTAACATTTTGCCAA 362
Query 357 GATTGTATCTTCTCTGTACCATAGGATCTGTATATATCAAATCCAAGGACGTTACTGCTA 416
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 363 GATTGTATCTTTTATGTACCATAGGATCTGTATATATCAAATCCAAGGATGTTACTGCTA 422
Query 417 CGGATATACTTAAGGATCTTGTTGAAATGTGTCGAGCTGTTCAACATCCTTTACGTGGTC 476
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 423 CGGATATACTTAAGGATCTTGTTGAAATGTGTCGAGCTGTTCAACATCCCTTGCGTGGTC 482
Query 477 TTTTCTTGCGAAGTTATCTTGCTCAAGTTACTAGGGATAAGTTACCCAGCATTGGTTCTG 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTTTCTTGAGAAGTTATCTTGCTCAAGTTACTAGGGATAAGTTACCCAGCATTGGTTCTG 542
Query 537 ACTTGGATGGAGATGGTGATGCACACATGAATGCTTTAGAGTTCGTGCTTCAAAATTTTA 596
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ACTTGGAAGGAGATGGTGATGCACACATGAATGCTTTAGAGTTCGTGCTTCAAAATTTTA 602
Query 597 CCGAGATGAACAAATTATGGGTTCGAATGCAACATCAGGGACCTAGTCGGGAGAAGGACA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 603 CCGAGATGAACAAATTATGGGTTCGAATGCAACATCAGGGACCTAGTCGGGAGAAAGAAA 662
Query 657 AACGGGAGAAAGAAAGGAATGAACTACGTGATCTTGTTGGGAAGAACCTTCATGTACTGA 716
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 663 AACGTGAGAAAGAAAGGAATGAACTACGTGATCTTGTTGGTAAGAACCTTCATGTACTGA 722
Query 717 GTCAGTTGGAAGGTGTTGACCTTGGAATCTACAGAGATACTGTTCTTCCTAGAATACTGG 776
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GTCAGTTAGAAGGTGTTGACCTTGGAATCTACAGAGATACTGTTCTTCCTAGAATACTGG 782
Query 777 AGCAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTAATGGATTGCATTATTC 836
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 783 AGCAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTC 842
Query 837 AAGTCTTTCCTGATGATTTCCACCTTCAAACTCTCGATGTATTATTGGGTGCTTGTCCAC 896
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 843 AAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTATTGGGAGCTTGTCCAC 902
Query 897 AACTTCAGCCATCTGTTGATATCAAGACGGTCCTTTCGGGTCTAATGGAAAGGCTTTCGA 956
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 903 AACTTCAGCCGTCTGTTGATATCAAGACGGTTCTTTCGGGTCTAATGGAAAGGCTTTCGA 962
Query 957 ACTATGCTGCATCCAGTGTGGAAGCGTTGCCTAATTTCCTGCAAGTAGAAGCCTTTTCAA 1016
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 963 ACTATGCTGCATCCAGTGTGGAAGCATTGCCTAATTTCCTGCAAGTAGAAGCCTTTTCAA 1022
Query 1017 AGTTAAATTATGCCATTGGGAAGGTTGTAGAAGCACAGGTGGACTTGCCGGCCGCAGCAT 1076
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1023 AGTTAAATTATGCCATTGGGAAGGTTGTAGAAGCACAGGCGGACTTGCCGGCCGCAGCAT 1082
Query 1077 CTGTAACATTGTATTTGTTTCTTCTGAAATTCACTCTCCATGTCTATTCCGATCGTTTGG 1136
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1083 CTGTAACATTGTATTTGTTTCTTCTAAAATTCACTCTCCATGTCTATTCCGATCGTCTGG 1142
Query 1137 ACTATGTAGACGAAGTTTTGGGATCTTGTGTTACTCAACTATCGGCCACAGGAAAGCTTT 1196
||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1143 ACTATGTGGACCAAGTTTTGGGATCATGTGTTACTCAACTATCTGCCACAGGAAAGCTTT 1202
Query 1197 GTGATGACAAGGCAGCAAAACAGATCGTCGCATTTCTTAGCGCTCCGTTGGAAAAGTATA 1256
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1203 GTGATGACAAGGCAGCAAAACAGATCGTCGCATTTCTTAGCGCTCCATTGGAAAAGTATA 1262
Query 1257 ATAATGTTGTAACTATCTTGAAGCTCACAAACTATCCTCGAGTAATGGAATACCTTGACC 1316
||||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1263 ATAATGTAGTAACTATCTTGAAGCTTACCAACTATCCTCTAGTAATGGAATACCTTGACC 1322
Query 1317 ATGAGACAAACAAAGCAATGGCAATCATTATAGTTCAGAGCATTTTGAAAAACAATACTC 1376
|||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||
Sbjct 1323 GTGAGACAAACAAAGCAATGGCAATCATTCTAGTTCAGAGCGTTTTTAAAAATAATACTC 1382
Query 1377 ATATTGCTACTGCTGATGAGGTCGATTCATTGTTTGAACTGGCAAAGGGTCTCATCAAGG 1436
| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1383 ACATTGCTACTGCTGATGAGGTCGATGCATTGTTTGAACTGGCAAAGGGTCTCATGAAGG 1442
Query 1437 ATTTTGACGGAA-AAGTTGATGATGAGATTGATGAAGAAGATTTCCAGGAAGAGCAGAAC 1495
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 ATTTTGACGGAACAA-TTGATGATGAGATTGATGAAGAAGATTTCCAGGAAGAGCAGAAC 1501
Query 1496 CTTGTTGCACGGCTTGTTCACAAGCTCTACAATGATGATCCAGAAGAAATGTATAAGATT 1555
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct 1502 CTTGTTGCACGGCTTGTTAACAAGCTCTACATTGATGATCCAGAAGAAATGTCTAAGATT 1561
Query 1556 ATTTTCACAGTAAGGAAGCACATCCTGGCTGGAGGACCTAAGCGTATGCCTTTAACTATA 1615
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1562 ATTTTCACTGTAAGGAAGCACATCGTGGCTGGAGGACCTAAGCGTTTGCCTTTAACTATA 1621
Query 1616 CCACCCCTTGTCTTTTCCGCTCTCAAGTTAATTCGGCGACTGAGAGGTGGAGATGAAAAC 1675
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1622 CCACCCCTTGTCTTTTCCGCGCTCAAGTTAATTCGGCGACTGCGAGGTGGAGATGAAAAC 1681
Query 1676 CCATTTGGAGATGATGCATCAGCAACACCGAAGAGAATTCTACAGCTTTTAAGTGAGGCA 1735
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1682 CCATTTGGAGATGATGCATCAGCAACACCGAAGAGAATTCTACAGCTGTTAAGCGAGAC- 1740
Query 1736 AGTACCGTGGAAGTTCTATCTGATGTTTCCGCACCTGATTTGGCATTGCGCCTCTACTTG 1795
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 -G----GTGGAAGTTCTATCTGATGTTTCCGCACCTGATTTGGCATTGCGCCTCTACTTG 1795
Query 1796 CAGTGTGCTCAGGCAGCAAATGACTGTGAGTTAGAAACAGTCACTTATGAGTTCTTCACA 1855
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1796 CAGTGTGCTCAGGCAGCAAATAACTGTGAGTTAGAAACAGTTGCTTATGAGTTCTTCACA 1855
Query 1856 AAGGCATATCTTCTGTATGAAGAAGAAATTTCAGATTCAAAGGCACAAGTAACAGCACTA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 AAGGCATATCTTCTGTATGAAGAAGAAATTTCAGATTCAAAGGCACAAGTAACAGCACTA 1915
Query 1916 CGTTTAATAATAGGGACACTCCAGCGGATGCGTGTATTTAATGTTGAGAACAGAGATACT 1975
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1916 CGTTTAATAATAGGGACACTCCAGAGGATGCGTGTATTTAATGTTGAGAACAGAGATACT 1975
Query 1976 CTGACTCACAAGGCGACAGGGTACTCTGCAAGACTCCTTAGGAAGCCAGATCAGTGTAGG 2035
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1976 CTGACTCACAAGGCGACAGGGTATTCTGCAAGACTCCTAAGGAAGCCAGATCAGTGTAGA 2035
Query 2036 GCTGTTTATGAGTGTGCGCATCTCTTCTGGGCTGACGAATGCGAGAACCTAAAAGATGGA 2095
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2036 GCTGTTTATGAATGTGCGCATCTCTTCTGGGCTGACGAATGCGAGAACCTGAAAGATGGA 2095
Query 2096 GAGAGGGTTGTGCTTTGTCTGAAGAGGGCACAAAGAATTGCAGATGCTGTTCAACAAATG 2155
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2096 GAGAGGGTTGTGCTTTGCCTGAAGAGGGCACAAAGGATTGCAGATGCTGTTCAACAAATG 2155
Query 2156 GCCAATGCATCCCGTGGTACCAGTAGCACTGGGTCGGTGGCTCTATATGTCGAACTGCTG 2215
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2156 GCCAACGCATCCCGTGGTACCAGTAGCACTGGGTCGGTGTCTCTATATGTCGAACTGCTG 2215
Query 2216 AACAAGTATCTCTACTTCTTGGAGAAAGGAAACCCACAATTAACAGGCGATACAATCCAG 2275
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 2216 AACAAGTATCTCTACTTCCTGGAGAAAGGAAACCAACAAGTAACAGGCGATACAATCAAG 2275
Query 2276 AGCTTAGCTGAATTAATCAGAAGCGAGACGAAGAAGGTTGAGTCAG----AG--CCGTTC 2329
||||||||||||||||||| ||||||||| |||||||||||||||| || || |||
Sbjct 2276 AGCTTAGCTGAATTAATCAAAAGCGAGACAAAGAAGGTTGAGTCAGGCGCAGAGCCATTC 2335
Query 2330 ATAAATAGCACTCTGCGTTACATCGAGTTTCAGAGACAGCAAGA---TGG---CATGGAT 2383
|||||||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 2336 ATAAATAGTACTCTACGTTACATCGAGTTTCAGAGACAGCAAGAAGATGGTGGCATGAAT 2395
Query 2384 GAGAAATACGAGAAAATCAAAATGGAATGGTTTGAATGAATTTCTTTCTTGCATTCTTTT 2443
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2396 GAGAAATACGAGAAAATCAAAATGGAATGGTTTGAATGAATTTATTTCTTGCATTCTGTT 2455
Query 2444 TGGCACATCATCAATAATCATATGGCTTCTCGTCTTGTTGCAGAAGCATGAAGAGTAACC 2503
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 2456 AGGCAAATCATCAATAATCA-ATGGCTTCTCGTCTTGTTGCAGAAGCATGAAGAGTAATC 2514
Query 2504 TTGAGAAATAAAACTTGTATCATTACTTTTCTTTTACTAGTTACACTCTCTCTACCAATA 2563
||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 2515 TTGAGAAATAAAACTTGTATCATTACTTTTCATTTCCTAGTTACACTCTCT--ACCAATA 2572
Query 2564 AACATGTTTGCAAAGT 2579
||||||||||||||||
Sbjct 2573 AACATGTTTGCAAAGT 2588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128026038536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5