BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485484

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51325.1 | Symbols:  | RING/U-box superfamily protein | chr3...   512    1e-144


> AT3G51325.1 | Symbols:  | RING/U-box superfamily protein | chr3:19051991-19052694 
FORWARD LENGTH=704
Length=704

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 377/421 (90%), Gaps = 23/421 (5%)
 Strand=Plus/Plus

Query  211  AAGAAGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA  270
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  AAGAGGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA  319

Query  271  GGAGGAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTCTGATGAGAATGGAGGCAAAAGAT  330
            |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  320  GGAGAAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTTTGATGAGAATGGAGGCAAAAGAT  379

Query  331  GTCATCAAGTCTCTTCCTTGTTCCCATGAGTTTCATAGTCTATGCGTCGATACGTGGTTC  390
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  380  GTCATCAAGTCTCTACCTTGTTCCCATGAGTTTCATAGTCTCTGCGTCGATACGTGGTTC  439

Query  391  AATGTCAGCCGCAAGATTTGCTGTCCTCTTTGTCGCTTTTCACCTGCTACCATTCTCCTC  450
            ||||||||||| |||||||||||||||||||| || ||||||||  ||||||| || || 
Sbjct  440  AATGTCAGCCGTAAGATTTGCTGTCCTCTTTGCCGTTTTTCACCCACTACCATCCTTCTT  499

Query  451  ACCGATGAACTTCTCCTCTGGTTCTCTTCTTTCCATTTCTGATTCCT-TGTGTCTCTGTA  509
            ||||||||||||||||||||||| |||||||| |||||||||||||  | ||||||||||
Sbjct  500  ACCGATGAACTTCTCCTCTGGTTTTCTTCTTTTCATTTCTGATTCCCAT-TGTCTCTGTA  558

Query  510  TTCCTGCTTTTCTGGG-A--A----T------------A-A-TACTTTAAAATCTCTTGT  548
            |||||||||||||||| |  |    |            | | |||| |||||||||||||
Sbjct  559  TTCCTGCTTTTCTGGGGATCAAACATCTTTCTCCTTGTATAATACTATAAAATCTCTTGT  618

Query  549  TGTACTAGTTTTCCATTCAAGGGGGAATGTCTAAGAAGTTTGATTCCTCTCTGGACAAAA  608
             ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct  619  AGTACTAGTTTTCCATTCAAGGAGGAATGTCTAAGGAGTTTGATTCCTCTCTGGAAAAAA  678

Query  609  A  609
            |
Sbjct  679  A  679


 Score =  302 bits (163),  Expect = 3e-81
 Identities = 201/218 (92%), Gaps = 8/218 (4%)
 Strand=Plus/Plus

Query  1    aaagaaataaaaagaaagaggagaagaagagaaggtgagaagTAAGGATCTGGTGTTGGT  60
            ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  14   AAAAAAAGAAAAAGAAAGAGGAGAAGAAGAGAAGGTGAGAAGTAAGGATCTGGTGTTGGT  73

Query  61   GTGTGAACATAAAGA--GAGAGAG-G-TGTGTTTAACGTACATTGTAATCCATTAAATT-  115
            |||||||||||||||  ||||||| | |||||||||||||||||||||||||| |||   
Sbjct  74   GTGTGAACATAAAGAAAGAGAGAGAGGTGTGTTTAACGTACATTGTAATCCATAAAAGAG  133

Query  116  AAAGAGCCTTGCAAATCACGCAACAGTGACCAACCCC-tttttttGGTTTGCCTCTCCAA  174
            ||| ||||||||||||||||||||||||||||||||| |||||||| |||| || |||||
Sbjct  134  AAA-AGCCTTGCAAATCACGCAACAGTGACCAACCCCCTTTTTTTG-TTTGTCTATCCAA  191

Query  175  CACACACGCCTCTTCTTACACTCTGTTATATTGATAAA  212
            |||||||||||||| ||||||||||||| |||||||||
Sbjct  192  CACACACGCCTCTTATTACACTCTGTTAAATTGATAAA  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5