BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485484 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT3G51325.1 | Symbols: | RING/U-box superfamily protein | chr3... 512 1e-144 > AT3G51325.1 | Symbols: | RING/U-box superfamily protein | chr3:19051991-19052694 FORWARD LENGTH=704 Length=704 Score = 512 bits (277), Expect = 1e-144 Identities = 377/421 (90%), Gaps = 23/421 (5%) Strand=Plus/Plus Query 211 AAGAAGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA 270 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 AAGAGGAAGATGAAGGTTCTGGAGAAGTGGTTGGCCTTGCTGTACCCGAGAGTGCAGGGA 319 Query 271 GGAGGAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTCTGATGAGAATGGAGGCAAAAGAT 330 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 320 GGAGAAGGAAGAGAGGAAGAGTGTTGTAGTGTTTGTTTGATGAGAATGGAGGCAAAAGAT 379 Query 331 GTCATCAAGTCTCTTCCTTGTTCCCATGAGTTTCATAGTCTATGCGTCGATACGTGGTTC 390 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 380 GTCATCAAGTCTCTACCTTGTTCCCATGAGTTTCATAGTCTCTGCGTCGATACGTGGTTC 439 Query 391 AATGTCAGCCGCAAGATTTGCTGTCCTCTTTGTCGCTTTTCACCTGCTACCATTCTCCTC 450 ||||||||||| |||||||||||||||||||| || |||||||| ||||||| || || Sbjct 440 AATGTCAGCCGTAAGATTTGCTGTCCTCTTTGCCGTTTTTCACCCACTACCATCCTTCTT 499 Query 451 ACCGATGAACTTCTCCTCTGGTTCTCTTCTTTCCATTTCTGATTCCT-TGTGTCTCTGTA 509 ||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||| Sbjct 500 ACCGATGAACTTCTCCTCTGGTTTTCTTCTTTTCATTTCTGATTCCCAT-TGTCTCTGTA 558 Query 510 TTCCTGCTTTTCTGGG-A--A----T------------A-A-TACTTTAAAATCTCTTGT 548 |||||||||||||||| | | | | | |||| ||||||||||||| Sbjct 559 TTCCTGCTTTTCTGGGGATCAAACATCTTTCTCCTTGTATAATACTATAAAATCTCTTGT 618 Query 549 TGTACTAGTTTTCCATTCAAGGGGGAATGTCTAAGAAGTTTGATTCCTCTCTGGACAAAA 608 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| Sbjct 619 AGTACTAGTTTTCCATTCAAGGAGGAATGTCTAAGGAGTTTGATTCCTCTCTGGAAAAAA 678 Query 609 A 609 | Sbjct 679 A 679 Score = 302 bits (163), Expect = 3e-81 Identities = 201/218 (92%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 1 aaagaaataaaaagaaagaggagaagaagagaaggtgagaagTAAGGATCTGGTGTTGGT 60 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14 AAAAAAAGAAAAAGAAAGAGGAGAAGAAGAGAAGGTGAGAAGTAAGGATCTGGTGTTGGT 73 Query 61 GTGTGAACATAAAGA--GAGAGAG-G-TGTGTTTAACGTACATTGTAATCCATTAAATT- 115 ||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||| Sbjct 74 GTGTGAACATAAAGAAAGAGAGAGAGGTGTGTTTAACGTACATTGTAATCCATAAAAGAG 133 Query 116 AAAGAGCCTTGCAAATCACGCAACAGTGACCAACCCC-tttttttGGTTTGCCTCTCCAA 174 ||| ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||| Sbjct 134 AAA-AGCCTTGCAAATCACGCAACAGTGACCAACCCCCTTTTTTTG-TTTGTCTATCCAA 191 Query 175 CACACACGCCTCTTCTTACACTCTGTTATATTGATAAA 212 |||||||||||||| ||||||||||||| ||||||||| Sbjct 192 CACACACGCCTCTTATTACACTCTGTTAAATTGATAAA 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5