BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485488
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51370.1 | Symbols: | Protein phosphatase 2C family protein... 2774 0.0
> AT3G51370.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:19069363-19072195 FORWARD LENGTH=1814
Length=1814
Score = 2774 bits (1502), Expect = 0.0
Identities = 1722/1823 (94%), Gaps = 36/1823 (2%)
Strand=Plus/Plus
Query 1 TCTGGTTAGAAGCAGTGGAGCcctttcctttctctcttctctcttttcct-ctttgcctt 59
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 TCTGGTTAGAAGCAGTGGAGCCCTTTCCTTTCTCTCTTCTCTCTTTT-CTCCTTTGCCTT 59
Query 60 c-t--tctcCGAAGAGAAGGTCGACGCTACTTCTTC--CTT-CTTC---CTTCTGGATCT 110
| | |||||| |||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 60 CTTCCTCTCCG-AGAGAAGGTCGACGCTACTTCTTCTTCTTCCTTCTTTCTTCTGGATCT 118
Query 111 GATTCGGATCCATCACTCTCTCGTTCTCTACATCAA----TTTT-TCAGATCTTCATCtt 165
|||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct 119 GATTCGGATCCATCACTCTCTCTTTCTCTACATCAATTTGTTTTCTCAGATCTTCATCTT 178
Query 166 tttttCTTCTACCTGTATTTGTCGACCTTTTCTTCTCTTATCACTAAACTCTCAAATCCT 225
|||||| | ||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 179 TTTTTCGTATACCTGTATTTGTCGACCTTTTC-TCTC-AATCACTAAACCCTCAAATCCT 236
Query 226 TTGTTTTGGA-T-TGAGATTGC-T-TCTGATTGTAATTGATTTGTTGTGTATCTGTTGAC 281
|| ||||||| | | ||||||| | |||||||||||||| |||| |||||||| ||||||
Sbjct 237 TT-TTTTGGATTATAAGATTGCTTCTCTGATTGTAATTGCTTTGATGTGTATCAGTTGAC 295
Query 282 TTGTGAAAAGTCTGCGAGTGACTTCTTCTTGTTT--ACATCAGCTTCTGTTGAATCTCTT 339
|||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |
Sbjct 296 TTGTGAAAAGTCTGCGAGTGACTTCTTCCTGTTTACACATCAGCTACTCCAGAATCTC-T 354
Query 340 GCAGATTCTTAAAAGCTTAAATCTTTGTTGCTACTTTGTTTGTTTCTGTGCATCCCTTTG 399
||||||||||||||||||||||||| || | |||||| ||||||||||||||| |||||
Sbjct 355 -CAGATTCTTAAAAGCTTAAATCTTT-TTTCGACTTTGATTGTTTCTGTGCATCGCTTTG 412
Query 400 ACGGATGTGGAGGaaaaaaaGGGTTGTCTTGATGAAATGAGGGATGTTATCAACGTTAAT 459
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 413 ACGGATGTGGAGG-AAAAAAGGGGTGTCTTGATGAAATGAGGGATGTTATCAACGTTAAT 471
Query 460 GAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGAATCAAC 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 GAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGATTCAAC 531
Query 520 AGGAAAACAAGATGGATTGCTTTGGTACAAAGACTCTGGTCAGCACCTCGTTGGTGAATT 579
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 532 TGGAAAACAAGATGGATTGCTTTGGTACAAAGACTTTGGTCAGCACCTCGTTGGTGAATT 591
Query 580 CTCCATGGCTGTTGTTCAAGCCAATAACTTGCTTGAGGATCAGAGTCAAGTCGAGTCTGG 639
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 592 CTCCATGGCTGTTGTTCAAGCCAACAACTTGCTTGAGGATCAGAGCCAAGTTGAGTCTGG 651
Query 640 TCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACCTTTGTTGGTGTATATGACGGCCA 699
||||||||||||||||||||||||||||||||||| ||| |||| | ||||| |||||
Sbjct 652 GCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACTTTTATTGGAATCTATGATGGCCA 711
Query 700 TGGTGGCCCTGAGACCTCACGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATT 759
||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGGCGGGCCTGAGACGTCGCGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATT 771
Query 760 CGCTGCAGAGGAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGA 819
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TGCTGCAGAGCAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGA 831
Query 820 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACTGATTGCAGCGGT 879
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 832 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACAGATTGCAGCGGT 891
Query 880 TGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGG 951
Query 940 GGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCGCTTCA 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 952 GGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCCCTTCA 1011
Query 1000 GCTCTCCGCAGAACATAATGTGAGCATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCA 1059
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1012 GCTCTCTGCTGAACATAATGTGAGTATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCA 1071
Query 1060 TCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGACTTAT 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1072 CCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTAT 1131
Query 1120 TCAGGTATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCGGAGTTCAACAAGGAACC 1179
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 TCAGATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACC 1191
Query 1180 ATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCGATCTTGAGTGGGGAACC 1239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1192 ATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTATCTTGAGTGGGGAACC 1251
Query 1240 AACGATAACGGAGCATGAGATCCAACCACAAGATCAGTTTCTAATATTCGCTTCTGATGG 1299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1252 AACGATAACGGAGCATGAGATCCAACCACAAGATAAGTTTCTAATATTCGCTTCTGATGG 1311
Query 1300 ACTATGGGAACAGCTGAGCAACCAAGAAGCCGTTGACATCGTTCAGAACCACCCACGAAA 1359
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1312 ACTATGGGAACAGATGAGCAACCAAGAAGCTGTTGACATCGTTCAGAACCACCCACGAAA 1371
Query 1360 TGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGAT 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGAT 1431
Query 1420 GAGATACTCTGATCTGAAGAAGATAGAGAGAGGAGTGAGAAGGCATTTCCACGATGACAT 1479
|||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1432 GAGATATTCTGATCTAAAGAAGATAGAGAGAGGTGTGAGGAGACATTTCCACGATGACAT 1491
Query 1480 AACTGTGGT-AGTCATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCTCTC 1538
||||||||| | | |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1492 AACTGTGGTCA-TAATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCCCAC 1550
Query 1539 TCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAAGATACTCCACTTTTAG 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAAGATACTCCACTTTTAG 1610
Query 1599 GCTCCCATCTTTTGTAGTTATATaaaaaaaaG-GTCACTCGT-GTTGGTATAAGAATGTA 1656
||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 1611 GCTCC-ATCTTTTGTAGTTATATAAAAAAAAAAGTCACT-GTTGTTGGTATAAGAATGTA 1668
Query 1657 TAATTTTAACGTGAAAGCCACACACCACTGACGTTTGGAACTCATTCCAGTAATTATTAA 1716
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1669 TAATTTTAACGTGAAAGCCACACAATACTGATGTTTGGAACTCATTCCAGTAATTATTAA 1728
Query 1717 TTTTTATTTATTCAGCAAACTTTGTGTAACGATGTAATTTGTTGTTGATGATGAATGGAT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1729 TTTTTATTTATTCAGCAAACTTTGTGTAACGATGTAATTTGTTGTTGATGATGAATGAAT 1788
Query 1777 ATGAATGTAGGCCTTCTTCTTCT 1799
|||||||||||||||||||||||
Sbjct 1789 ATGAATGTAGGCCTTCTTCTTCT 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89005566285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5