BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485493
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51410.1 | Symbols: | Arabidopsis protein of unknown functi... 699 0.0
> AT3G51410.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr3:19081257-19082212 REVERSE LENGTH=956
Length=956
Score = 699 bits (378), Expect = 0.0
Identities = 428/452 (95%), Gaps = 4/452 (1%)
Strand=Plus/Plus
Query 1 TTTTCTTCAGCAGAATCAAGAAACATGGCATTCCCTGAAACCAAACTTCAAATGCCCA-T 59
|||||||||||||||| ||||||||||||||| || ||||||||||| |||||| ||| |
Sbjct 65 TTTTCTTCAGCAGAATTAAGAAACATGGCATTTCCAGAAACCAAACTCCAAATG-CCAGT 123
Query 60 TAGATCTATAAGTCTTCCATCAAGAATCCACCATCCTTCTGCTAAGTTTCAAGCTGCTCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TAGATCTATAAGTCTTCCATCAAGAATCCACCATCCTTCTGCTAAGTTTCAAGCTGCTCT 183
Query 120 CTCTCAGATTCATCTTTTCCAAAACTCATCTGATTCACAATCTCTTCAAGCCTCATTACT 179
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 184 CTCTCAGATTCATCTCTTCCAAAACTCATCTGATTCTCAATCTCTTCACGCCTCGTTACT 243
Query 180 CAACCTCTCTGAGCTTTACCATTCCCTTCACCAACTCAATCACTCTCTTCCCACAGCTCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CAACCTCTCTGAGCTTTACCATTCCCTTCACCAACTCAATCACTCTCTTCCCACAGCTCA 303
Query 240 AGCTGAACATTCTCTTGACGTGTCCGCCACGTTACTAGACTCTTGCGACGCAGCGAGAAA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 304 AGCTGAACATTCTCTTGACGTGTCAGCCACGTTACTAGACTCTTGCGACGCAGCGAGAAA 363
Query 300 CCTAATCCTAACACTCAGAGAGCATCTCCTCAATCTTCAGTCTGCGCTT-AGGAGAAAGG 358
|||| | || || ||||||||||||||||| |||||||||||||| || || ||||| |
Sbjct 364 CCTAGTTCTCACTCTCAGAGAGCATCTCCTTAATCTTCAGTCTGCA-TTGAGAAGAAAAG 422
Query 359 ATAAATCCATGGAAGTTCAGATCAAAGAGTACTTTTCCTTCAGGAAAAAGATCAAGAAAG 418
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 423 ACAAATCCATGGAAGTTCAGATCAAAGAGTACTTTTCCTTTAGGAAGAAGATCAAGAAAG 482
Query 419 AGACTAACAAGCTTCTTCTTGGCCTCAAGAAG 450
||||||||||||||||||||||||||||||||
Sbjct 483 AGACTAACAAGCTTCTTCTTGGCCTCAAGAAG 514
Score = 538 bits (291), Expect = 3e-152
Identities = 326/343 (95%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 451 GTCTCTATCTTCCGCTCTCTTTTCATGTTCCTGTCGACAACATCGACCGTAAAGACAAAG 510
||||| ||||||||||||||||||||||||||||| |||||||| || | |||||||||
Sbjct 548 GTCTCCATCTTCCGCTCTCTTTTCATGTTCCTGTCCACAACATCAACAATGAAGACAAAG 607
Query 511 ACATGTTCTCTCAAATTCGTCTCCAAGCTGATCAGTGGTGGTCACCGATCGTCGTCGTCG 570
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 608 ACATGTTCTCTCAAATTCGTCTCCAGGCTGATCAGTGGTGGTCACCGATCGTCATCGTCG 667
Query 571 ATAATGAGCGAGTTGCAGAATGTT-GATGTGGTTCTACGTTCAGATGGGGATAACTCCAA 629
|||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 668 ATAATGAGCGAGTTGCAGAA-CTTGGATGCAGTTCTACGTTCAGATGGGGATAACTCCAA 726
Query 630 GGAAATGAAGAAGATGTTAGAGAGATTAGAGGAAAGAACAGAGGAACTTGAGGCTGCACT 689
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 727 GGAAATTAAGAAGATGTTAGAGAGATTAGAGGAAAGAACAGAGGAACTTGAGACTGCACT 786
Query 690 TGATTCTCTTTTCAAGTCTCTTGTCCAATATAGAGTTTATTTGCTCAACATTCTTACAAC 749
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 787 TGATTCTCTTTTCAAGTCACTTGTCCAATATAGAGTTTATTTGCTTAACATTCTTACAAC 846
Query 750 ACACTCTTAGTTTAGTTAGTCTCTAATTGTACACAAAACATAT 792
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ACACTCTTAGTTTAGTTAGTCTCTAATTGTACACAAAACATAT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5