BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485498
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51470.1 | Symbols: | Protein phosphatase 2C family protein... 1899 0.0
> AT3G51470.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:19097787-19099275 REVERSE LENGTH=1254
Length=1254
Score = 1899 bits (1028), Expect = 0.0
Identities = 1144/1201 (95%), Gaps = 3/1201 (0%)
Strand=Plus/Plus
Query 1 AAAAAAGAAAGCTTTTGATCGGAATCTGGAAATGGCACCGGTGACTGAAGTTTCTCCGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAGAAAGCTTTTGATCGGAATCTGGAAATGGCACCGGTGACTGAAGTTTCTCCGAT 60
Query 61 GATTAACACTTTGGAAGTTGCAGATGACAAAATGACGAATCTCACCTCCTCTGGCAAGCC 120
||| ||||| |||||||| ||||||||||||||||||||||||| |||||||| || ||
Sbjct 61 GATCAACACATTGGAAGTCGCAGATGACAAAATGACGAATCTCAGTTCCTCTGGGAAACC 120
Query 121 TCCAAGGAATATCTCTGCAATGCGCCATTGCAACAGCACTGCTTGGTTGACCGATTCCGA 180
|||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 121 TCCAAGAAACATCTCTGCAATGCGCCATTGCAACAGCACTGCCTGGTTGACCGATTACGA 180
Query 181 AGGAGATGAGAGATTTGGTGCAAAATCTCCGCAAGGAGTGAATTCAACATTCCAGCCTGT 240
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 181 AGGAGATGAGAGATTTGGTGCAAAATCTCCGGAAGGAGTAAATTCAACATTCCAGCCTGT 240
Query 241 GTTTAGATCTGGAAGTTGGTCTGATAAAGGACCAAAGCAATCCATGGAAGATGAATTCAT 300
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 241 GTTTAGATCTGGAAGTTGGTCTGATAAAGGACCAAAACAATCAATGGAAGATGAATTCAT 300
Query 301 TTGTGTTGATGACCTCACTGAACATATTGGATCATCCACTGGAGCTTTCTATGGGGTCTT 360
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 301 TTGTGTTGATGATCTCACTGAGTATATTGGATCATCCACTGGAGCTTTCTATGGGGTGTT 360
Query 361 TGATGGACATGGAGGTGTTGATGCAGCATCATTCACAAAGAAGAACATTATGAAACTTGT 420
||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 361 TGATGGACACGGAGGTGTTGATGCTGCATCATTCACAAAAAAGAACATTATGAAGCTTGT 420
Query 421 AATGGAAGACAAACATTTCCCAACCAGTACAAAGAAGGCAACAAGAAGTGCTTTTGTCAA 480
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 421 AATGGAAGACAAACATTTCCCAACCAGCACAAAGAAGGCAACAAGGAGTGCTTTTGTGAA 480
Query 481 GACGGATCATGCTTTAGCTGATGCTTCCTCTCTTGATAGATCATCTGGCACCACTGCACT 540
||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 481 GACTGATCATGCTTTGGCTGATGCTTCTTCTCTTGATAGATCCTCTGGCACTACTGCACT 540
Query 541 CACTGCTCTTATCTTGGACAAGACTATGTTGATTGCAAACGCTGGTGATTCCAGAGCGGT 600
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 CACTGCTCTCATTTTGGACAAGACTATGTTGATTGCAAACGCTGGTGACTCCAGAGCGGT 600
Query 601 GCTTGGGAAACGTGGCAGAGCCATTGAGCTATCAAAGGACCACAAACCAAATTGTACTTC 660
|||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 601 GCTTGGGAAACGAGGCAGAGCCATTGAGTTATCAAAGGACCACAAACCTAACTGTACTTC 660
Query 661 CGAGCGGCTACGTATTGAGAAGCTTGGAGGTGTGATCTACGATGGCTACCTTAACGGGCA 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CGAGCGGCTACGTATTGAGAAGCTTGGAGGTGTGATCTACGATGGTTACCTTAACGGGCA 720
Query 721 GCTATCCGTGGCTCGAGCTTTAGGAGATTGGCACATTAAGGGAACTAAAGGTTCACTCTG 780
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTATCTGTGGCTCGAGCCTTAGGAGATTGGCACATTAAGGGAACTAAAGGTTCACTCTG 780
Query 781 CCCGCTCAGCTGCGAGCCTGAACTGGAAGAGATTGTGCTGACGGAGGAGGATGAGTTTCT 840
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 781 CCCGCTCAGCTGCGAGCCTGAGCTGGAAGAGATTGTGCTGACGGAAGAGGATGAGTATCT 840
Query 841 TATAATGGGCTGTGATGGACTCTGGGATGTGATGAGCAGCCAGTGTGCAGTGACGATGGT 900
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TATAATGGGCTGTGATGGACTCTGGGATGTGATGAGTAGCCAGTGTGCAGTGACGATGGT 900
Query 901 GAGAAGGGAGCTGATGCAGCATAATGATCCTGAGAGATGCTCTCAAGCTTTGGTTAAGGA 960
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGGAGGGAGCTGATGCAGCATAATGATCCTGAGAGATGCTCTCAAGCTTTGGTTAAGGA 960
Query 961 GGCTCTTCAACGCAACAGCTGTGATAATCTTACTGTAGTGGTTGTCTGTTTCTCGCCTGA 1020
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 961 GGCTCTTCAACGAAACAGCTGTGACAATCTTACTGTAGTGGTTGTCTGTTTCTCGCCCGA 1020
Query 1021 ACCGCCTCCTCGGATTCAGAT-CCCTAAGTCGCATAAGAGGAGGAGCATCTCTGCAGAGG 1079
| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 AGCGCCTCCTCGGATTGAGATTCCC-AAGTCGCATAAGAGGAGGAGCATCTCTGCAGAGG 1079
Query 1080 GATTGGATCTCCTCAAAGGTGTTTTAAACGAGTTGTGAAAGAACTGAGAGCAAGTTGGAA 1139
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1080 GATTGGATCTCCTCAAAGGTGTTTTGAACGAGTTGTGAAGGAACTGAGAGCAAGTTGGAA 1139
Query 1140 AAAGGTAAGA-GAGTTACTTTCTTCtttttttGTTTCCTCTTTTGATAGGAAAGTCAGAG 1198
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAAGGTAAGAAGAGTTACTTTATTCTTTTTTTGTTTCCTCTTTTGATAGGAAAGTCAGAG 1199
Query 1199 A 1199
|
Sbjct 1200 A 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5