BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485501

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   531    3e-150


> AT3G51500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 
23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:19108134-19108890 FORWARD 
LENGTH=615
Length=615

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 349/377 (93%), Gaps = 11/377 (3%)
 Strand=Plus/Plus

Query  27   GTGAAACCCTAAACAAATCGCAGAGATGCAAAATTCAAAGATTCCACCGTTT-TCTGAAA  85
            ||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||| 
Sbjct  53   GTGAAACCCTAGACAAATCGCAGAGATGCAAGATTCAAAGATTCCACC-TTTCTCTGAAG  111

Query  86   CAAAAAGAATGAAGATTTCTACTCCAAAACAACCCTTGACCCAATTACCATCAAGAATCG  145
            ||||||||||||||||| |||||||||||||||||||||| ||| ||||| || | ||||
Sbjct  112  CAAAAAGAATGAAGATTCCTACTCCAAAACAACCCTTGACTCAACTACCACCACGTATCG  171

Query  146  GGAAAAAAGTTTCAAATCGGAG-----C--A--AGTTTCATGCGATTTCACATCAACTTG  196
            ||||||||||||||||||||||     |  |  || ||||||||||||||||||||||||
Sbjct  172  GGAAAAAAGTTTCAAATCGGAGCAAATCGAACCAGGTTCATGCGATTTCACATCAACTTG  231

Query  197  ACATGTCTCCAAATTCAGATTCATCTTCAGGAAACGAGTACAGAGCACTGAGGCGTAAGT  256
            | |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct  232  AGATGTCTCCAAATTCAGATTCATCTCCAGGAAACGAGTACAGAGCACTGAGACGCAAGT  291

Query  257  ATTTGCTGCTAGAAGAAGATAGTTTCGCGTTGGAGAGAGAATTAAAGGAAGCAGAGGATG  316
            ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  292  ATTTGCTGCTAGAGGAAGATAGTTTCGCGTTGGAGAGAGAGTTAAAGGAAGCAGAGGATG  351

Query  317  AGGTTAAAGCACTTGAAGATGAGAAACTTGAGCTCTTGGACAAACTCGTTGTAATGGAAG  376
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  352  AGGTTAAAGCACTTGAAGATGAGAAACTTGAGCTCTTGGACAAACTCGTTGTTATGGAAG  411

Query  377  GTTTAGTTGATCCTTGA  393
            |||||||||||||||||
Sbjct  412  GTTTAGTTGATCCTTGA  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5