BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485503
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51520.1 | Symbols: | diacylglycerol acyltransferase family... 1797 0.0
> AT3G51520.1 | Symbols: | diacylglycerol acyltransferase family
| chr3:19110596-19112760 FORWARD LENGTH=1330
Length=1330
Score = 1797 bits (973), Expect = 0.0
Identities = 1184/1281 (92%), Gaps = 34/1281 (3%)
Strand=Plus/Plus
Query 1 AGTTAAAAGATTGGTTATTTGGGCTCT-CTACCTTAAGTGAGAGAGAAGATAGATAGATC 59
||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct 1 AGTTAAAAGATTGGTTATTTGGGCTCTGC-A-CTCAAGTGAGAGAGAAGATAGATAGATC 58
Query 60 TGAGTAGAATCTTCGA-T-A-CATTCATTGTCGTCGTTCATCTGTGAGAAGCGGACAAAC 116
|||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||
Sbjct 59 TGAGTAGAATCTTCGATTCATTATTCGTTGTCGTCGTTCATCTGTGAGAAGCGGACAAAC 118
Query 117 CAAAGAATCCGCGGGAGCTAGTGATATGGGCGGTTCCAGAGAGTTCCGAGCTGAGGAACC 176
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 CAAAGAATCCACCGGAGCTAGTGATATGGGTGGTTCCAGAGAGTTCCGAGCTGAGGAACA 178
Query 177 CTCAAACCAATTCCACTCGATCATCGCCATAGCCATCTGGCTTGGCGCCATTCACTTCAA 236
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 TTCAAATCAATTCCACTCTATCATCGCCATGGCCATCTGGCTTGGCGCCATTCACTTCAA 238
Query 237 CGTCGCTCTTGttctctgttctctcattttccttcctgcttctctatctctcatggtctt 296
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 CGTCGCTCTTGTTCTCTGTTCTCTCATTTTCCTTCCTCCTTCTCTATCTCTCATGGTCTT 298
Query 297 gggcttgctctctctGTTTATCTTCATCCCAATCGACCATCGTAGCAAATACGGTCGTAA 356
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 299 GGGCTTGCTCTCTCTGTTTATCTTTATCCCAATCGATCATCGTAGCAAATATGGTCGTAA 358
Query 357 GCTCGCTAGGTACATATGCAAGCACGCGTGTAGTTATTTCCCTGTCTCTCTGTACGTCGA 416
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 359 GCTCGCTAGGTACATATGCAAGCACGCGTGTAATTATTTCCCCGTCTCTCTGTACGTCGA 418
Query 417 GGATTACGAAGCTTTTCAGCCTAATCGTGCCTATGTCTTTGGTTATGAACCACATTCGGT 476
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGATTACGAAGCTTTCCAGCCTAATCGTGCCTATGTCTTTGGTTATGAACCACATTCGGT 478
Query 477 GTTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTCTTACTAATAT 536
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 479 GCTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTATTCCTAACAT 538
Query 537 TAAAGTTCTTGCAAGTAGTGCTATTTTCTACACTCCCTTTCTAAGGCATATATGGACATG 596
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 TAAAGTTCTTGCAAGTAGTGCTATATTCTACACTCCCTTTCTAAGGCATATATGGACATG 598
Query 597 GTTAGGCCTCACCGCTGCTTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAG 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTAGGGCTCACCGCTGCTTCTAGGAAGAATTTCACTTCCCTTTTGGATTCTGGCTACAG 658
Query 657 TTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGAC 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGTGTTCTTGTACCTGGTGGTGTGCAGGAGACTTTTCATATGCAACATGATGCTGAGAA 718
Query 717 TGTCTTCCTTTCAAGGAGAAGAGGTTTTGTGCGCATAGCCATGGAACAGGGGAGTCCTCT 776
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 719 TGTCTTCCTTTCAAGGAGAAGAGGATTTGTGCGCATAGCCATGGAACAGGGGAGCCCTCT 778
Query 777 GGTTCCAGTGTTCTGCTTTGGTCAGGCACGAGTGTACAAATGGTGGAAGCCGGAATGGGA 836
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 779 GGTTCCAGTATTCTGCTTTGGTCAGGCACGCGTGTACAAATGGTGGAAGCCGGATTGTGA 838
Query 837 TCTCTATCTCAAACTATCTAGAGCAATCAGGTTTACTCCGATCTGCTTCTGGGGAGTTTT 896
||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 839 TCTCTATCTTAAACTATCTAGAGCAATCAGATTCACCCCGATCTGCTTCTGGGGAGTTTT 898
Query 897 GGGGTCACCATTACCGTGTCGACAGCCTATGCACGTGGTAGTTGGTAAACCAATAGAAGT 956
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 899 TGGATCACCATTACCGTGTCGACAGCCTATGCATGTGGTCGTTGGTAAACCAATAGAAGT 958
Query 957 TACAAAAACTCTGAAGCCAACTGATGAAGAGATTGAC-AAGTTCCATGGCCAGTATGTGG 1015
||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||
Sbjct 959 CACAAAAACTCTGAAGCCAACTGACGAAGAGATTG-CTAAGTTTCATGGCCAGTATGTGG 1017
Query 1016 AAGCGCTTAGGGATCTGTTTGAAAGGCACAAGTCCCGAGTAGGTTATGATCTTGAGTTGC 1075
|||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||
Sbjct 1018 AAGCGCTTAGGGATCTGTTTGAGAGGCACAAGTCCCGAGTCGGCTATGATCTTGAGCTGA 1077
Query 1076 ACATTCTTTGAACGTAATCTCCGATGGAAATTACTACTTGTGTGTAT--T--ATT--T-G 1128
| ||||||||||| ||||||| |||||||| | ||||||||||||| | ||| | |
Sbjct 1078 AAATTCTTTGAACAAAATCTCCAATGGAAATAATTACTTGTGTGTATCCTTCATTAATTG 1137
Query 1129 TTACCTTGGTGCTGGATTTGGA-TT--TA-A--T-A-TACAT---G-A--CTGCA---AC 1171
||||||||| |||||||||||| || || | | | ||||| | | || || |
Sbjct 1138 TTACCTTGGAGCTGGATTTGGACTTAATATAAATGACTACATCATGTAGTCTACATGTAT 1197
Query 1172 T--ATGTCTTTAACATCGACTGTTGTAGTAATGGAATACGTTTATAAAGCCTGTAAATTA 1229
| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1198 TGCATGTCTTTAGCATCGACTGTTGAAGTAATGGAATACGTTTATAAAGCCTGTAAATTA 1257
Query 1230 CTTTTAATCTTGCAGAAGAGT 1250
| | | ||||||| ||||||
Sbjct 1258 CATGTCGTCTTGCACAAGAGT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5