BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485504
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51530.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1770 0.0
AT4G00160.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 396 4e-109
AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:1... 353 2e-96
AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 324 2e-87
AT3G52670.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Ric... 322 6e-87
AT3G26930.1 | Symbols: | Protein with RNI-like/FBD-like domain... 130 4e-29
> AT3G51530.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr3:19112694-19114643 REVERSE LENGTH=1693
Length=1693
Score = 1770 bits (958), Expect = 0.0
Identities = 1229/1358 (91%), Gaps = 26/1358 (2%)
Strand=Plus/Plus
Query 1 ATGGAACAAGGTGGTAAAAGTTCGAGAATGGGAGATTTTATGCGTGAGGACAGGATCAGT 60
|||||||||||||| ||||||||||||| | || ||||||| |||||||||| ||||||
Sbjct 186 ATGGAACAAGGTGGCAAAAGTTCGAGAAAGCCAGGTTTTATGAGTGAGGACAGAATCAGT 245
Query 61 GAGTTGCCTGAAGTTTTGCTTCTGAAGATATTGTCTTCACTTCCTACGAAACTTGTCATA 120
|||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 246 GAGTTGCCTGAAGTTTTGCTTCTGCAGATACTGTCTTCACTTCCTACAAAACTTGTCATA 305
Query 121 TCCACAAGTGTTTTGTCTAAACGATGGCGCTCTCTTTGGAAAATGGTACCAAGACTCGAG 180
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct 306 TCCACAAGTGTTTTGTCCAAACGATGGCTATCTCTTTGGAAAATGGTACAAAGACTCGAG 365
Query 181 TTTGAATCTTATCGAAACATATATGAATTTGCAGAAAATGTTACCAGGTCTTTTCTTTCA 240
|||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 366 TTTGAATCTTCTCGAAACATATATGACTTTGCTGAAAACGTTACCAGGTCTTTGCTTTCA 425
Query 241 CATAAAGCTCCAGTTCTAGAGAGTTTGCATCTGAAAGTTAGAGATCAATTTGATGGTGTA 300
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 426 CATAAAGCTCCAGTTCTAGAGAGTTTGCATCTGAAAGTTGGAGATCAATTTGATGGTGTT 485
Query 301 TATCTTGGAGTTTGGGCTACAATTGCATTTGCACGCCATGTGCGTGAGTTCGTACTCGAT 360
||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 486 TATGTTGGAGTATGGGCTACAATTGCATTTACACGCCATGTTCGTGAGTTCGTACTCGAT 545
Query 361 CTTAGTTTTTGCCATGG-CCTGCAAATCAGATTTCCAAGTAGCTTGTTTTGCTTTGACAC 419
||||||| || |||||| ||| | | |||||||||||| |||||||||||||||||| ||
Sbjct 546 CTTAGTTCTTACCATGGCCCT-CGAGTCAGATTTCCAACTAGCTTGTTTTGCTTTGATAC 604
Query 420 ACTTGAGACCTTGAAACTTATGAATTACGTTTATCTTGATTTTCCTTCTCTGGTTTCTAT 479
||||||||||||||||| | || ||||||||||| || || |||||| || |||||||||
Sbjct 605 ACTTGAGACCTTGAAAC-T-TG-ATTACGTTTATATTTATGTTCCTTGTCCGGTTTCTAT 661
Query 480 GAAGTCCCTTAGAACTCTTCACCTTCTATCCCTGGTGTACAAAGGCGATGAATCTGTTCA 539
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct 662 GAAGTCCCTTAGAACTCTTCACCTTCTATCTGTGGTCTACAAAGGCGATGAATCTGGTCA 721
Query 540 TAATCTTTTTTCTAGCTGCCCTAATCTTGAACATTTGGTCCTGCGTCGAGGTTTC-TCTC 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 722 TAATCTTTTTGCTAGCTGCCCTAATCTTGAACATTTGGTCCTGCGTCGAGGTTTCTTCT- 780
Query 599 ATGATTATGTTA-AGAATTTCACCATTGAGGCACCATCTTTGAAGACACTATCGCTTTCC 657
|||| || || |||||||| |||||| || ||||||||||||||||| | |||||||
Sbjct 781 TTGATGCTG-TAGTGAATTTCATCATTGATGCGCCATCTTTGAAGACACTTTTGCTTTCC 839
Query 658 GATTCCTTTCGTGCGCGAGAGAGTAGT---GGATATGTGATAAAAGCTCCTTCTTTGAAG 714
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GATCCCTTTAGTGCGCGAGAGAGTAGTAGGGGATATGTGATAAAAGCTCCTTCTTTGAAG 899
Query 715 TACTTGGGAATTGAAAGTGTAGAAGGTTATGAGTTTTTTCTGATTGAGAATGCATCAGAG 774
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| | | |||
Sbjct 900 TACTTGGGAATTGAAAGTGTAGAAGGTTTTGAGTATTTTCTGATTGAGAATGTAACCGAG 959
Query 775 CTAGTTGAGGCTAGTATTAGAAACGTTTCTAAGATAGTCAATGAGAAGATTTTGGGATCT 834
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 CTAGTTGAGGCAAATATTAGAAACGTTTCTAAGATAGTCAATGAGAATATTTTGGGATCT 1019
Query 835 CTTGAGTCAGCCAAGCGTCTTTCCTTGGACTTATCACCTTTGAAGATTACATATCCTACT 894
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTCAAGTCAGCCAAACGTCTTTCCTTGGACTTATCACCTTTGAAGATTACATATCCTACT 1079
Query 895 GAAGTTATGTACCATCAACTGGTATATCTAGAGATGCATACACATAAAGTGGAGTGGTGG 954
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 GAAGTTATGTACCATCAGCTGGTATATCTGGAGATGCATACACATAAAGTGGAGTGGTGG 1139
Query 955 AATATGCTTACAGT-CATGCTCGATAGCTCTCCTAAACTACAAGTCCTCAAGCTGATTGA 1013
||| | ||||| | |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1140 AATCTACTTAC-GCACATGCTTGATAGCTCTCCTAAACTACAAGTCCTCAAGCTCATTGA 1198
Query 1014 TCATGAAACTCGTCAGGAAAATCTAGAATTTAACAAACAATATACGGACCAAGGGGAATG 1073
|| ||| |||||||| |||||||||||||| ||||| |||| | |||||||||| ||||
Sbjct 1199 TCGTGAGACTCGTCATGAAAATCTAGAATTCGACAAAAAATACAAGGACCAAGGGAAATG 1258
Query 1074 GAATGAGCCAAAGTATGTCCCTGAATGTTTGTTGTCACATTTAGAGACATTTGTGTGGAA 1133
|||| | ||||||||||||||||||||| | | | | | | ||| ||||||
Sbjct 1259 GAATCAACCAAAGTATGTCCCTGAATGTCTC--G--A-A---AC-G---TTTATGTGGAG 1306
Query 1134 AAATTGCAATTGGGGAAGAGAAGAAGAGAAAGAAGTGGCTACATACATTCTAAGGAACGC 1193
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1307 AAATTGCAATTGGGGAAGAGAAGAAGAGAAAGAAGTGGCGACGTACATTCTAAGGAACGC 1366
Query 1194 AAGACAGCTGAAGAAGGCAACTTTCTCCACGGATCCTATTGAATCGAAAAGGCTCTGTAA 1253
||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||
Sbjct 1367 AAGACAGCTGAAGAAGGCAACTTTCTCTACGGATCCCATTGAAGCGAAGAGGCTCTGTAA 1426
Query 1254 GTTGGCAAAAAGAAGTAAGATGCGCAACGAATTGGATGGTGTGGTCAGGGCTTCCAGCTC 1313
||||| |||||| ||||||||||| | ||||||||||||||||||| | |||||| ||
Sbjct 1427 ATTGGCCAAAAGACGTAAGATGCGCGAGGAATTGGATGGTGTGGTCATGACTTCCAATTC 1486
Query 1314 AAGCCACCTTGTGTTTGAATTCGAATGATCTTATATGT 1351
| |||||||||| |||||||||||||||||||||||||
Sbjct 1487 ATGCCACCTTGTTTTTGAATTCGAATGATCTTATATGT 1524
> AT4G00160.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr4:63410-65479 FORWARD LENGTH=1531
Length=1531
Score = 396 bits (214), Expect = 4e-109
Identities = 1052/1432 (73%), Gaps = 155/1432 (11%)
Strand=Plus/Plus
Query 1 ATGGAACAAGGTGGTAAAAGTTCGAGAATGGGAGATT-TTATGCGTGAGGACAGGATCAG 59
|||||||||||| | |||||| | |||| ||| || ||||| || | |||||||||||
Sbjct 56 ATGGAACAAGGT-G--AAAGTTTGCGAATTAGAG-TTGTTATGGGTAAAGACAGGATCAG 111
Query 60 TGAGTTGCCTGAAGTTTTGCTTCTGAAGATATTGTCTTCACTTCCTACGAAA-CTTGTCA 118
|||||||||||| | ||||||| | |||||| |||||| ||||| || ||| |||||
Sbjct 112 TGAGTTGCCTGATGCTTTGCTTATAAAGATACTGTCTTTTCTTCCAAC-AAAGATTGTCG 170
Query 119 TATCCACAAGTGTTTTGTCTAAACGATGG-CGCTCTCTTTGGAAAATGGTACCAAGA-CT 176
|| |||| |||||||| ||||||| |||| || |||||||||| |||| |||| | ||
Sbjct 171 TAGCCACGAGTGTTTTTTCTAAACAATGGAGGC-CTCTTTGGAAGTTGGTGCCAA-ATCT 228
Query 177 CGAGTTTGAATC------TTA--TCG--AAA-CATA-TATGA-ATTTGCAGAAAAT-GTT 222
|||||| || || ||| || ||| | | ||| | |||| ||| | || |||
Sbjct 229 CGAGTTCGATTCTGAGGATTACGACGACAAAGAACAGTAT-ACATTTTCAG-AGATAGTT 286
Query 223 ACCAGGTCTTTTCTTTCACATAAAGCTCCAGTTCTAGAGAG-TTTGCATC-TGAAAG-TT 279
|| ||||| |||||||||||||| || ||||||||||| ||| | || || || ||
Sbjct 287 TGCAAATCTTTCCTTTCACATAAAGCCCCGGTTCTAGAGAGCTTT-CGTCTTG--AGTTT 343
Query 280 --A-GAGATCAATTTGATGGTGTATATCTTGGAGTTTGGGCTACAATTGCATTTGC-ACG 335
| ||| || ||||| |||| || ||||| |||||| | |||||| ||| | | |
Sbjct 344 GAATCAGAAAAAGTTGATCCTGTAGATATTGGACTTTGGGTTGGAATTGCGTTTTCTA-G 402
Query 336 CCATGTGCGTGAGTTCGTACTCGAT-CTTAGTTTTTGCC---A--TGGCCTGCAAATCAG 389
||| ||||||| || || |||| | | | | | | || | || | || |||
Sbjct 403 ACATCTGCGTGAATTGGTGCTCGTTGC-T-GCTGATACCGGGACGGGGACGGC-TTTCAA 459
Query 390 ATTTCCAAGTAGCTTGTTTTGCTTTG--ACACACTTGAGACCTTGAAACTTATGAATTAC 447
|||||| ||||||||| | | | ||| ||||||||||||| |||| ||| | | ||
Sbjct 460 ATTTCCGAGTAGCTTG-TGTAC-TTGCAACACACTTGAGACTTTGAGACTCGT-ACTTTT 516
Query 448 G-TT-TATCTTGATTTTC-CTTCTCTGGTTTCT-ATGAAGTCCCTTAGAACTCTTCACCT 503
| || | | |||| | || |||||| || | | |||||||| ||||| ||||| || ||
Sbjct 517 GATTCT-TGTTGA-TATCTCTTCTCCGG-TAGTAATGAAGTCTCTTAGGACTCTCCATCT 573
Query 504 TCTATCCCTG-GTG-TACAAAGGCG-ATGAATCTGTTCATAATCTTTTTTCTA-GCTGCC 559
| | | || | | ||||||| || || |||| | | ||| ||||| || | ||||||
Sbjct 574 T-GA-GCTTGTGAGCTACAAAGACGAAT-CATCTATCCGTAACCTTTTATC-AGGCTGCC 629
Query 560 CTAATCTTGAACATTTGGTCCTGCGTCGAGGT--TTCTCTCATGATTATGTTAAGAATTT 617
||| ||||||| | ||| | || ||||||| | || ||| || || || |||
Sbjct 630 CTATTCTTGAAGAATTGCTTGTGATTCGAGGTGAAGAT-TC-TGA-TA--TTGAGGTTTT 684
Query 618 CACCA-T--TGAGG-CACCATCTTTGAAGACACTATCGCTT--T-CCGATTCCTTTCG-T 669
||| | | ||||| | || |||||||||| | || || || | ||| || | | |
Sbjct 685 CACTATTGATGAGGTC-CCTTCTTTGAAGAGATTAACGATTAATGACGA--CC-AT-GAT 739
Query 670 GCG-CGAGAGAGTAGTGGATATGTGATAAAAGCTCCTTCTTTGAAGTACTT-GGGAATTG 727
| | | |||| | | |||||||||||||| |||||||||||||| ||||| | ||||
Sbjct 740 G-GACAAGAGTTTTGGGGATATGTGATAAATGCTCCTTCTTTGAAATACTTACTG-ATTG 797
Query 728 AA-AGTGT-AGAAGGTTATGAGTTTTTTCTGATTGAGAATGCATCAGAGCTAGTTGAGGC 785
|| | | | || | || | ||||| || | |||||| | |||||| | |||||
Sbjct 798 AAGACT-TAAG-ATGTCCCGGGTTTTGTC----T--GAATGCGCCGGAGCTAATGGAGGC 849
Query 786 TAGTATTAGAAACGTTTCTA-AGATAGTCAATGAGAAGATTT-TGGGATCTCTTGA-GTC 842
| |||| | | | | | ||| |||||| || ||| | |||| || | | ||
Sbjct 850 AAATATTTTTGATGGTAC-ATCTATAACCAATGACAA-CTTTCTTGGATATC-TCACTTC 906
Query 843 AGCCAAGC-GTCT-TTCCTTGGACTTATCACCTTTGAAGATTACATATCCTACT-GAAGT 899
|| ||| | || | || ||| | |||||||||| ||||||||||||||||||| ||||
Sbjct 907 AGTCAAACGGT-TGTT-GTTGAATTTATCACCTTGGAAGATTACATATCCTACTGGAAG- 963
Query 900 TATGTACCATCAACTGGTATATCTAGAGATGCATACACAT-AAAGTGGAGTGGTGGAATA 958
||| | | |||| ||||||| |||||||||| |||||| | ||| | || |||||| ||
Sbjct 964 TATCTTCTATCAGCTGGTATCTCTAGAGATGTATACACGTGAAA-TAGATTGGTGGGATC 1022
Query 959 TGCTTACAG-TCATGCTCG-ATAGCTCTCCTAAACTACAAGTCCTCAAGCTGATTGATCA 1016
| ||||| | ||||||||| | | ||||||||||||||||| |||||||| | || |
Sbjct 1023 TACTTAC-GCTCATGCTCGAACA-TTCTCCTAAACTACAAGTTCTCAAGCTCACTG---A 1077
Query 1017 TGAAACTCGTCAG-GAAAATCTAGAATTTAACAAACAATAT-ACGGACCAAGGGGAATGG 1074
| || | || | | |||| | | ||| ||| | | ||| | || |||||
Sbjct 1078 T--AA-TTGT--GTG-AAAT-T-TCA--TAA-AAATGGTTTGCCGG-GC--GGCAAATGG 1123
Query 1075 AATGAGCCAAAGTATGTCCCTGAATGTTTGTTGTCACATTTAGAGACATTTGTGTGGAAA 1134
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1124 AATGAGCCAAAGTATGTCCCTGAATGTTTGTTGTCGCATTTAGAGACATTTGTGTGGAGA 1183
Query 1135 A-ATTGCAATTGGGGAAGAGAAGAAGAGAAAGAAGTGGCTACATACATTCTAAGGAACGC 1193
| ||| | |||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 1184 AGATT-CGATTGGGGAAGAGAAGAAGAGAAAGAAATAGCTACATACATTCTAAAGAACGC 1242
Query 1194 AAGACAGCT-GAAGAAGGCAACTTTCTCCACGGATCCTATTGAA-TCGAAA-AGGCTCTG 1250
||||| | | ||| |||||||||||||| || ||||| || || ||| || || ||| |
Sbjct 1243 AAGAC-GATTGAACAAGGCAACTTTCTCGACAAATCCTGTT-AACTCGGAAGAG-CTC-G 1298
Query 1251 T-AAGTTGGCAAAAAGA-A-GTAAGATGCGCAACGAATTGGATGGTGTGGTCAGGGCTTC 1307
|||||| ||| ||| | ||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 1299 ACAAGTTG--AAAGAGAGACGTAAGGTGCACAACGAATTAGATGGTGTGGTCAGGGCTTC 1356
Query 1308 CAGCTCAAGCCACCTTGTGTTTGAATTCGA-ATGATCTTAT-ATGTATTAGA 1357
| ||| |||| |||| || ||||||| | ||||||| |||||| |||
Sbjct 1357 AAATTCATGCCAGTTTGTATTCAAATTCGATAC-ATCTTATCATGTATCAGA 1407
> AT3G52690.1 | Symbols: | RNI-like superfamily protein | chr3:19530736-19531811
FORWARD LENGTH=900
Length=900
Score = 353 bits (191), Expect = 2e-96
Identities = 701/936 (75%), Gaps = 80/936 (9%)
Strand=Plus/Plus
Query 418 ACACTTGAGACCTTGAAACTTATGAATTACG-TTTATCTTGATTTTCCTTCTCTGGTTTC 476
|||||||||||||||| || | | ||| | | | | | ||| ||||||||| ||||
Sbjct 10 ACACTTGAGACCTTGATTCTCAAGTATTTGGCTCT-TGTGGATGTTCCTTCTCCAGTTTG 68
Query 477 TATGAAGTCCCTTAGAACTCTT-CACCTTCTA-TCCCTG-GTGTACAAAG-GCGATGAAT 532
|||||||||||| |||||| || |||||| | | || | | | ||| | ||||||
Sbjct 69 TATGAAGTCCCTCAGAACT-TTGCACCTT-GATTGTGTGAAT-TTC-AAGCACAATGAAT 124
Query 533 CTGTTCA-TAATCTTTTTTCTAGCTGCCCTAATCTTGAACATTTGGTCCTGCGTCGAGGT 591
|| || | ||| ||| | ||| |||| |||||||||||| ||||| || || || | |
Sbjct 125 CT-TTTAGTAACCTTATATCTGGCTGTCCTAATCTTGAAGATTTGTTCATGTATCAATAT 183
Query 592 TTCTCTCAT-GAT-TATGTTAA-GAATTTCACCATTGAGGCACCATCTTTGAAGACACTA 648
| | ||| | ||| || | ||| |||||||| |||| ||||||||| ||||||| |||
Sbjct 184 TACCCTC-TAGATGTA-G-TAATGAATTTCATTATTGTGGCACCATCCTTGAAGAGGCTA 240
Query 649 TCGCTTTCCGATTCCTTTCGTGCGCGAGAGAG-TAGTGGATATGTGATAAAAGCTCCTTC 707
| | ||| | | | ||||| | | || ||||||||||| |||||| |
Sbjct 241 --G---T--AATT-ATAGATTAC-AGAGAG-GCCGGGGGCTATGTGATAAATGCTCCTAC 290
Query 708 TTTGAAGTACTTGGGAATTGAAAGTGTAGAAG--GTTATGAGTTTT-TTCTGATTGAGAA 764
|||||| ||||| | || | |||| || | || || || ||||| || ||||||||||
Sbjct 291 TTTGAAATACTT-GAAAATAAAAGGGTTG-AGTCATTGTGGGTTTTGTT-TGATTGAGAA 347
Query 765 TGCATCAGAGCTAGTTGAGGCTAGTATTAGAAA-CGTTTCTAAGATAGT-CAATGAGAAG 822
||| ||| | |||||||||| | |||||||| | ||| | | ||| | ||| ||||||
Sbjct 348 TGCGCCAGTGTTAGTTGAGGCAAAAATTAGAAATC-TTTTTTATATA-TACAAAGAGAAG 405
Query 823 ATTTTGGGATCTCTTGAGTCAGCCAAGCGTCTTTCCTTGGACTTATCACCTTTGAAGATT 882
||| ||||||| || |||||||||| ||||||||||||||||||||||| ||| |
Sbjct 406 ATTCTGGGATCCCTCAAGTCAGCCAAACGTCTTTCCTTGGACTTATCACCCTTG--G--- 460
Query 883 ACATATCCTACTGA-AGTTATGTACCATCAACTGGTATATCTAGAGATGC-ATACACATA 940
| | ||||| ||| || ||| | | |||| |||||| |||||||||| | ||||| ||
Sbjct 461 A-GTGTCCTATTGATAG-TATCTTCTATCAGCTGGTACATCTAGAGAT-CTATACATGTA 517
Query 941 AAGTGGAGTGGTGGAATATGCTTACAG-TCATGCTCGATAGCTCTCCTAAACTACAAGTC 999
||| ||||||||||||| | |||| || ||||||| |||||||| |||||| ||||||||
Sbjct 518 AAGAGGAGTGGTGGAATCTACTTA-AGCTCATGCTTGATAGCTCGCCTAAATTACAAGTC 576
Query 1000 CTCAAGCTGATTGATCATGAAACTCGTCAGGAAAATCTAGAATTTAACAAACA-AT-ATA 1057
|| |||| || || || || | ||||| | || ||||| ||| | | ||
Sbjct 577 CTTAAGC---TT-AT--TG------GT-A--AAAATTTGGATTTTAA-AAA-AGTTGGTA 619
Query 1058 CGGACCAAGGGGAATGGAATGAGCCAAAGTATGTCCCTGAATGTTTGTTGTCAC-ATTTA 1116
|| | || |||||||||| |||||| |||| ||||||||||||||||| | | |||
Sbjct 620 TGGTCGGCGGTAAATGGAATGAACCAAAGAATGTTCCTGAATGTTTGTTGTCTCAACTTA 679
Query 1117 GAGACATTTGTGTGGAAAAATTGCAATTGGGGAAGAGAAGAAGAGAAAGAAGTGGCTACA 1176
||| |||||||||| || || | |||||| ||| |||| |||||||||||||||||||
Sbjct 680 -AGATGTTTGTGTGGACAAGTTACCATTGGGAAAGTGAAGTAGAGAAAGAAGTGGCTACA 738
Query 1177 TACATTCTAAGGAACGCAAGACAGCTGAAGAAGGCAACTTTCTCCACG-GATCCTATTGA 1235
|||||||||| ||| |||||||| ||||||| | || |||||| || || |||||| |
Sbjct 739 TACATTCTAAAGAATGCAAGACAATTGAAGAATGTAAGTTTCTCTACAAGA-CCTATTCA 797
Query 1236 ATCGAAA-AGGCTCTGTAAGTTGGCAAAAAGAA--GTAAGATGCGCAACGAATTGGATGG 1292
|| ||| || | | ||||||| || | ||| ||||||||| ||| || || |||||
Sbjct 798 TTCCAAAGAG-CACAACAAGTTGG-AAGA-GAAATGTAAGATGCTCAAGGAGTTAGATGG 854
Query 1293 TGTGGTCAGGGCTTCCAGCTCAAGCCACCTTGTGTT 1328
||| || |||||||| || ||| | |||||||||||
Sbjct 855 TGTTGTTAGGGCTTCAAGTTCATGTCACCTTGTGTT 890
> AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:18169079-18170660 FORWARD
LENGTH=1344
Length=1344
Score = 324 bits (175), Expect = 2e-87
Identities = 948/1302 (73%), Gaps = 130/1302 (10%)
Strand=Plus/Plus
Query 46 GAGGACAGGATCAGTGAGTTGCCTGAAGTTTTGCTTCTGAAGATATTGTCTTCACTTCCT 105
|||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 61 GAGGACAGGATCAGTGAGTTGCCTGAAGCGTTGCTTCTGCTCATATTGTCGTCACTTCCA 120
Query 106 AC-GAAACTTGTCATAT-CCACAAGTGTTTTGTCTAAACGATGGCGCTCTCTTTGGAAAA 163
|| |||||| || || | |||| |||||||||||||||| |||| |||||||||||
Sbjct 121 ACAGAAACT-GTGAT-TGCCACTAGTGTTTTGTCTAAACAATGGAAATCTCTTTGGAAGT 178
Query 164 TGGTACCAAGA-CTCGAGTTTGAATCT---TATCGAA-A-CAT-ATATGAATTTGCAGAA 216
|||| |||| | ||| ||||||| ||| |||| | | ||| ||| | ||| ||||
Sbjct 179 TGGTGCCAA-ATCTCAAGTTTGATTCTAAGTATC-ATTATCATTATACGT-TTT-CAGAT 234
Query 217 AATGTTACCAGGTCTTTTCTTTCACATAAAGCTCCAGTTCTAGAGAGTTTGCATCTGAAA 276
|||||| ||||||||| |||||||||||||||| |||||||| ||||||||| |||||
Sbjct 235 AATGTTTTCAGGTCTTTGATTTCACATAAAGCTCCTGTTCTAGATAGTTTGCATTTGAAA 294
Query 277 GTTAGA-GATCAATT-TGATGGTGTATATCTTGG-AGT-TTGGGCTACAATTGCATTTGC 332
||| || ||| || ||||| | | || |||| | | ||| | |||||||||| |
Sbjct 295 GTT-GAAGAT-AAGGATGATGCTTTGGATGTTGGGA-TATTGAT-TGGAATTGCATTTTC 350
Query 333 ACGCCATGTGCGTGAGTTCGTACTCGATC-TTAGTTTT-TGCCATGGCCTGCAAA-TCAG 389
|||||| ||||| | || ||||| || ||| || || | || || | ||
Sbjct 351 CCGCCATATGCGTAAATTTGTACT-GAAAATTACATTGCTGG-A-GGAAAGCTTTGTAAG 407
Query 390 ATTTCCAAGTAGCTTGTTTT-GCT-T--TGACACACTTGAGACCTTGAAACTTATGAATT 445
|||||| ||| ||||| | | | | | ||| |||||||| | |||| |||| | | |||
Sbjct 408 ATTTCCGAGT-GCTTGGTGTAGTTGTAATGATACACTTGAAATCTTGGAACTCAAGTATT 466
Query 446 ACGTT-TATCTT-GATTTTCCTTCTCTGGTTTCTATGAAGTCCCTTAGAACTCT-TCACC 502
| || | | || ||||||||||||||||||| | ||||||| ||||||| || | | |
Sbjct 467 GCATTCT-T-TTAGATTTTCCTTCTCTGGTTTGTTTGAAGTCTCTTAGAAAGCTGT-ATC 523
Query 503 TTCTATCCCTG-GTG-TACAAAGGCGATGAATCTGTTCATAATCTTTTTTCTAGCTGCCC 560
| ||| || || | | | || | ||| ||||| ||| || ||||| | | |||||||
Sbjct 524 T-CTA-CCATGTGAGATTTAACGACGAAGAATCCGTTTGCAACCTTTTATGTGGCTGCCC 581
Query 561 TAATCTTGAACATTTGGTCCTGCGTCGAGGTTTCTCT-CATGATTATGTTAAGAATT-TC 618
|| ||||||| |||||||| ||| | || | | | | ||| || | || || |
Sbjct 582 TAGTCTTGAAGATTTGGTCGTGCATAGACATAGCACGACC-GATG-TGG-A-GAGTTAT- 636
Query 619 ACCATTGAGGCACCATCTTTGA-AGACACTATCGCTT-TCCGATTCCTTTCGTGCGCGAG 676
|| |||| || ||||| || | ||| |||| | | | | ||| || | | | |||
Sbjct 637 ACTATTGCGGTGCCATCATT-ACAGAGACTAAC-CATATATGATGA-TTAC-TATG-GAG 691
Query 677 AGAG-TAGT-GGA---TATGTGATAAAAGCTCCTTCTTTGAAGTACTTGGGA-ATTGAAA 730
| || | || ||| ||||||||||| |||||||||||||| |||||| | || ||
Sbjct 692 A-AGGT-GTTGGAGGCTATGTGATAAATGCTCCTTCTTTGAAATACTTGA-ACATCGACG 748
Query 731 GTGTAGAA-GGT-TATGAGTTTT-TTCTGATTGAGAATGCATCAGAGCTAGTTGAGGCTA 787
| || || ||| | |||||||| || |||||||||| || |||||||||| |||||||
Sbjct 749 G-GTTTAATGGTCT-TGAGTTTTGTT-TGATTGAGAAGGCGCCAGAGCTAGTGGAGGCTA 805
Query 788 GTATTAGAAACGTTTCT-AAGATAGTCAATGAGAAGATTTTGGGA-TCTCTTGAGT-CAG 844
||||| ||||| | || |||| ||||||||| ||| ||| | ||||| | | |||
Sbjct 806 AAATTAGTGCCGTTTTTGAA-ATAGCCAATGAGAACATTATGG-ACTCTCTA-ACTTCAG 862
Query 845 CCAAGCGTCTTTCCTTGGACTTATCACCTTTGAAGATTACA-TATCCTACTG--AAGTTA 901
|||| |||||||||| ||||| ||||||| ||||| | | |||||||||| || |
Sbjct 863 CCAAATGTCTTTCCTTACACTTAGCACCTTTCAAGATAA-AGTATCCTACTGGTAAAATC 921
Query 902 TGTACCATCAACTGGTATATCTAGAGATGCATACACATAA--AGTGGAGTGGTGGAATAT 959
| | | | || || ||| || ||| | | | || ||| | || ||||||||||| |
Sbjct 922 T-T-CTACCAGCTTTTATCGCTGGAGCTTCGTGCATATAGCTA-TG-AGTGGTGGAATCT 977
Query 960 GCTTACAGT-CATGCTCGATAGCTCTCCTAAACTACAAGTCCTCAAGCTGATTGATCATG 1018
||| || |||||||||||| ||||| ||| ||||| | || ||||| | || |
Sbjct 978 ACTTTG-GTTCATGCTCGATAGTTCTCCCAAATTACAAATTCTTAAGCTC---G-TC--G 1030
Query 1019 AAACTCGTCAGGAAAATCTAGAATT--TAACA-AACAATATACGGACCAAGGGGAATGGA 1075
| || || | || || || ||| | || | | | ||| |||||||||
Sbjct 1031 A---TC--CAT-A---TC-AGT-TTCCTAA-AGAAGATTGTTCGGTGGGCTGGGAATGGA 1078
Query 1076 AT-GAGCCAAAGTATGTCCCTGAATGTTTGTTGTCACAT-TTAGAGACATTTGTGTGGAA 1133
| || ||||| | ||| |||||||||||||||| ||| || ||||||||||||||||
Sbjct 1079 GTCGACCCAAA-TGTGTTCCTGAATGTTTGTTGTTTCATCTT-GAGACATTTGTGTGGAC 1136
Query 1134 AA-AT-TGCAATTGGGGAA-GAGAAGAAGAGAAAGAAGTGGCTACATACATTCT-AAGGA 1189
|| || || | | || || ||||||| ||||||| ||||||||||||||| || ||| |
Sbjct 1137 AAGATATG-AGT-GGC-AACGAGAAGATGAGAAAGCAGTGGCTACATACATCCTTAAG-A 1192
Query 1190 ACGCAAGACAGCT-GAAGAAGGCAACTTTCTCCACGGATCCTATTGAATC-GAAAAGGCT 1247
| |||||| ||| |||||| |||||| ||||||| | || || | ||| ||| || ||
Sbjct 1193 ATGCAAGAT-GCTTGAAGAAAGCAACTCTCTCCACAAAACCCATCGGATCTGAAGAG-CT 1250
Query 1248 CT-GTAAGTTGGCAAAAAGAAGTAAGATGCGCAACGAATTGG 1288
| | ||||||| ||| ||| || |||||| ||||| ||||
Sbjct 1251 CGAG-AAGTTGGGAAAGAGACGTGAGATGCTTAACGAGTTGG 1291
> AT3G52670.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich
Repeat domains containing protein | chr3:19525247-19526737
FORWARD LENGTH=1155
Length=1155
Score = 322 bits (174), Expect = 6e-87
Identities = 344/422 (82%), Gaps = 27/422 (6%)
Strand=Plus/Plus
Query 926 AGATGCATACACATAAAGTGGAGTGGTGGAATATGCTTACAGTCATGCTCGATAGCTCTC 985
|||||||||||| || || |||||||||||| | ||||| |||||||||||||||||||
Sbjct 755 AGATGCATACACGTAGAGAAGAGTGGTGGAATCTACTTACGGTCATGCTCGATAGCTCTC 814
Query 986 CTAAACTACAAGTCCTCAAGCTGATTGATCATGAAACTCGTCAGGAAAATCTAGAATTTA 1045
|||||||||||||||||||||| ||||||||| | ||| |||| | || | | |
Sbjct 815 CTAAACTACAAGTCCTCAAGCTCATTGATCAT-A--CTC---AGGA---TGTA-AGT--A 862
Query 1046 ACAAACAATATACGGACCAAGGG-GAA-TGGAATGAGCCAAAGTATGTCCCTGAATGTTT 1103
| | | ||| | || | | | ||| ||||| || ||||||||||| |||||||||||
Sbjct 863 A-AGATAATGT--GGTT-A-GCGAGAAATGGAACGAACCAAAGTATGTTCCTGAATGTTT 917
Query 1104 GTTGTCACATTTAGAGACATTTGTGTGGAAAA-ATTGCAATTGGGGAAGAGAAGAAGAGA 1162
|||||| || | |||||||||||||||| || || | |||||| ||||||||||||||
Sbjct 918 GTTGTCTCACCTCGAGACATTTGTGTGGATAAGATA-CGATTGGGAAAGAGAAGAAGAGA 976
Query 1163 AAGAAGTGGCTACATACATTCTAAGGAACGCAAGACAGCTGAAGAAGGCAACTTTCTCCA 1222
||||||| ||||||||||||||||||||||||||| | ||||||||| |||| ||||||
Sbjct 977 AAGAAGTAGCTACATACATTCTAAGGAACGCAAGATGGTTGAAGAAGGGAACTATCTCCA 1036
Query 1223 CGGATCCTATTGAATCGAAAAGGCTCT-GT-AAGTTGGCAAAA-AGAAGTAAGATGCGCA 1279
| |||| || ||||||||| | | || | ||||||| || | ||| ||||||||| ||
Sbjct 1037 CAAATCCCATCGAATCGAAA-GAC-CTTGAGAAGTTGG-AAGAGAGACGTAAGATGCTCA 1093
Query 1280 ACGAATTGGATGGTGTGGTCAGGGCTTCCAGCTCAAGCCACCTTGTGTTTGAATTCGAAT 1339
| || |||||| |||||||||||||||||| || || |||||||||| ||||||||||
Sbjct 1094 ATGAGTTGGATAGTGTGGTCAGGGCTTCCAATTCTTGCAACCTTGTGTTCGAATTCGAAT 1153
Query 1340 GA 1341
||
Sbjct 1154 GA 1155
> AT3G26930.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr3:9925754-9927393 FORWARD LENGTH=1449
Length=1449
Score = 130 bits (70), Expect = 4e-29
Identities = 105/122 (86%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 45 TGAGGACAGGATCAGTGAGTTGCCTGAAGTTTTGCTTCTGAAGATATTGTCTTCACTTCC 104
||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 99 TGAGGACAGGATCAGTGAGTTGCCTGAAGCTTTGCTTCTGCAGATATTGTCTTTACTTCC 158
Query 105 TACGAAACTTGTCA-TATCCACAAGTGTTTTGTCTAAACGATGGCGCTCTCTTTGGAAAA 163
|| ||| || | || ||| ||||| ||||||||||||||| | ||||||||||| |
Sbjct 159 AACAAAAAAAGT-AGTAGCCATGAGTGTCTTGTCTAAACGATGGAGGTCTCTTTGGAAGA 217
Query 164 TG 165
||
Sbjct 218 TG 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70330963545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5