BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485507
Length=3063
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51550.1 | Symbols: FER | Malectin/receptor-like protein kin... 4741 0.0
> AT3G51550.1 | Symbols: FER | Malectin/receptor-like protein kinase
family protein | chr3:19117584-19120881 REVERSE LENGTH=3123
Length=3123
Score = 4741 bits (2567), Expect = 0.0
Identities = 2922/3089 (95%), Gaps = 41/3089 (1%)
Strand=Plus/Plus
Query 1 AAAATATCTCTGTCTTCTCCAAAAACTCTCTCCGATTTCATCGCTTAGGGTTTCTTCCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 AAAATATCTCTGTCTTCTCCAAAAACTCTCTCCGATTTCATCGCTTAGGGTTTCTTCCCC 92
Query 61 GATTCTTCAGATCTGAGAAGAAGATCTTCCCGGAG-ACTGCTCTTGATCGATGAAGATCA 119
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 93 GATTCTTCAGATCTGAGAAGAAGATCTTCCCGGAGAAGTGCTCTTGATCGATGAAGATCA 152
Query 120 CGGAGGGACAATTCCG----tctc-tc-tcttcttcttc-tct--tATCTGCAGCAACTT 170
| ||||||| |||||| |||| || ||||||||||| ||| |||||||||||||||
Sbjct 153 CAGAGGGACGATTCCGTCTCTCTCTTCTTCTTCTTCTTCTTCTCATATCTGCAGCAACTT 212
Query 171 TAATCTCAGCTGCTGATTACTCTCCAACAGAGAAAATTTTGTTGAATTGC---GGTGGTG 227
||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 213 TAATCTCAGCTGCTGATTACTCTCCAACAGAGAAAATCCTATTGAATTGCGGTGGTGGTG 272
Query 228 CTTCTGATCTCGTTGACACAGATAACCGTACATGGATCTCCGATGTCAAATCAAAATTCT 287
||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 273 CTTCTAATCTAACCGACACAGATAACCGTATATGGATCTCCGATGTCAAATCAAAATTCT 332
Query 288 TATCTTCTTCATCAT-CAGACTCCAAAACATCACCAGCGTTAACACAAGATCCTTCCGTT 346
|||| ||||| || | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 333 TATCATCTTCCTC-TGAAGACTCTAAAACATCACCAGCGTTAACACAAGATCCTTCCGTT 391
Query 347 CCCGAAATTCCTTACATGACGGCGAGAGTTTTCCGATCTCCTTTCACTTATACTTTCCCT 406
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 392 CCCGAAGTTCCTTACATGACGGCGAGAGTTTTCCGATCTCCTTTCACTTACACTTTCCCT 451
Query 407 GTAGCATCAGGTCGTAAATTCGTGCGTCTCTACTTCTATCCAAATTCATACGACGGTCTC 466
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 452 GTAGCATCAGGTCGTAAATTCGTGCGTCTCTACTTCTACCCAAACTCGTACGACGGTCTC 511
Query 467 AATGCTACGAACTCGTTGTTCTCTGTCTCCTTTGGTCCTTACACTCTTCTCAAGAACTTT 526
|| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 512 AACGCTACCAACTCGTTATTCTCCGTCTCCTTTGGTCCTTACACTCTTCTCAAGAA-TTT 570
Query 527 -AGCGCTGCTCAGACGGCGGAGGCGTTGACTTACGCTTTCATCATCAAGGAGTTTGTTGT 585
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CAGTGCTTCTCAGACGGCGGAGGCGTTGACTTACGCTTTCATCATCAAGGAGTTTGTTGT 630
Query 586 GAATGTTGAAGGTGGAACATTGAACATGACGTTTACACCGGAATCAACTCCGTCTAATGC 645
|| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 631 CAACGTTGAAGGTGGAACGTTGAACATGACGTTTACACCGGAATCAGCTCCGTCTAATGC 690
Query 646 GTATGCGTTTGTTAATGGGATTGAGGTTACTTCAATGCCTGATATTTATAGTAGTACTGA 705
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 691 GTATGCGTTTGTTAATGGGATTGAGGTTACTTCAATGCCTGATATGTATAGTAGTACTGA 750
Query 706 TGGGACTTTGACGATGGTGGGATCATCT-ACTTCTATTACTATTGACAACAGTACTGCTC 764
|||||||||||| ||||| ||||||||| | ||| |||||||||| |||||||||||||
Sbjct 751 TGGGACTTTGACTATGGTTGGATCATCTGGC-TCTGTTACTATTGATAACAGTACTGCTC 809
Query 765 TTGAGAATGTTTATAGGCTTAATGTTGGAGGGAATGATATCTCGCCTTCTGCCGATACGG 824
|||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 810 TTGAGAATGTGTATAGGCTCAATGTTGGAGGGAATGATATCTCGCCTTCCGCGGATACGG 869
Query 825 GTTTGTATAGGTCGTGGTATGATGATCAGCCTTATATATTTGGTGCAGGACTTGGGATTC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 870 GTTTGTATAGGTCGTGGTATGATGATCAGCCTTATATATTTGGTGCAGGACTTGGTATTC 929
Query 885 CAGAGACTGCTGATCCTAACATGACCATTAAGTATCCTACGGGGACTCCTACGTATGTTG 944
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 930 CAGAGACTGCTGATCCCAACATGACGATTAAGTATCCTACGGGGACTCCTACTTATGTTG 989
Query 945 CTCCTGTCGATGTTTATTCAACCGCTAGGTCGATGGGTCCAACAGCTCAAATCAATCTCA 1004
||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 990 CTCCTGTGGATGTTTATTCAACCGCGAGGTCTATGGGTCCAACAGCTCAGATCAATCTCA 1049
Query 1005 ACTACAATCTTACTTGGATTTTCAGCATTGACTCGGGGTTT-ACTTACCTTGTTAGGCTT 1063
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1050 ACTACAATCTTACTTGGATTTTCAGCATTGACTC-TGGTTTCACTTACCTTGTTAGACTT 1108
Query 1064 CATTTCTGTGAGGTTTCTTCCAACATCACTAAGATCAACCAACGGGTGTTTACAATCTAT 1123
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1109 CATTTCTGTGAGGTTTCTTCGAATATCACTAAGATCAACCAACGGGTGTTTACAATCTAC 1168
Query 1124 CTCAACAATCAAACTGCTGAGCCTGAAGCTGATATTATTGCTTGGACTAGTTCAAACGGG 1183
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1169 CTCAACAATCAAACTGCTGAGCCTGAAGCTGATGTGATTGCTTGGACTAGTTCAAACGGG 1228
Query 1184 GTTCCGTTTCACAAGGATTACGTGGTGAATCCTCCAGTGGGAAATGGACAGCAAGATATG 1243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1229 GTTCCGTTTCACAAGGATTACGTGGTGAATCCTCCAGAGGGAAATGGACAGCAAGATTTG 1288
Query 1244 TGGCTTGCTCTTCATCCTAACCCGA-TTAACAAGCCGGAGTATTATGATTCTATTCTTAA 1302
||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 1289 TGGCTTGCTCTTCATCCTAACCC-AGTTAACAAGCCGGAGTATTATGATTCTCTTCTTAA 1347
Query 1303 TGGAGTAGAGATATTCAAGATGAATACATCTGATGGTAATTTGGCAGGTCCCAATCCTAT 1362
|||||| |||||||||||||||||||| |||||||||||| |||| ||| ||||||||||
Sbjct 1348 TGGAGTGGAGATATTCAAGATGAATACTTCTGATGGTAATCTGGCTGGTACCAATCCTAT 1407
Query 1363 ACCTGGTCCACAGGTGACTGCAGATCCATCCAAAGTCCTAAGCCCAACTTCTGGGAAATC 1422
||||||||||||||||||||| |||||||| ||||||||| |||| ||| || |||||||
Sbjct 1408 ACCTGGTCCACAGGTGACTGCTGATCCATCTAAAGTCCTACGCCCGACTACTAGGAAATC 1467
Query 1423 AAAAAGCAATACGGCTATTGTTGCAGGCGCAGCCAGTGGTGCGGTTGTTCTGGCCCTTAT 1482
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1468 GAAAAGCAATACGGCTATTATTGCAGGCGCAGCCAGTGGTGCAGTTGTTCTGGCCCTTAT 1527
Query 1483 CA-TCGGTTTCTGTGTGTTTGGTGCTTACCGCAGACGTAAGCGTGGTGATTACCAGCCTG 1541
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 CATTGGGTTT-TGTGTGTTTGGTGCTTACCGCAGACGTAAGCGTGGTGATTACCAGCCTG 1586
Query 1542 CAAGTGATGCAACATCAGGGTGGCTTCCACTTTCTCTGTATGGAAACTCACATTCTGCTG 1601
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1587 CTAGTGATGCAACATCAGGGTGGCTTCCACTATCTCTGTATGGAAACTCACATTCTGCTG 1646
Query 1602 GCTCGGCCAAGACAAACACAACAGGAAGTTATGCCTCTTCCCTTCCGTCAAATCTTTGCC 1661
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1647 GCTCGGCGAAGACAAACACAACAGGAAGTTATGCCTCGTCCCTTCCGTCAAATCTTTGCC 1706
Query 1662 GTCACTTTTCGTTTGCTGAGATTAAAGCAGCCACTAAAAACTTTGATGAGTCCCGGGTGC 1721
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1707 GTCACTTCTCGTTTGCTGAGATCAAAGCTGCCACTAAAAACTTTGATGAGTCCCGGGTGC 1766
Query 1722 TTGGTGTTGGAGGTTTTGGCAAGGTTTACAGAGGAGAGATTGATGGCGGAACTACAAAGG 1781
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 TTGGTGTTGGTGGTTTCGGCAAGGTTTACAGAGGAGAGATTGATGGCGGAACTACAAAGG 1826
Query 1782 TAGCCATCAAGAGAGGAAACCCAATGTCTGAGCAAGGTGTACACGAGTTCCAGACTGAGA 1841
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1827 TAGCCATCAAGAGAGGCAACCCAATGTCCGAGCAAGGTGTACATGAGTTCCAGACTGAGA 1886
Query 1842 TTGAAATGCTTTCAAAGCTTAGACACCGTCACCTTGTGTCCTTGATTGGATACTGTGAAG 1901
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1887 TTGAAATGCTTTCAAAGCTTAGACATCGTCATCTTGTGTCCTTGATTGGATACTGTGAAG 1946
Query 1902 AGAACTGCGAAATGATCTTAGTGTATGATTACATGGCTCATGGTACAATGAGGGAGCATC 1961
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1947 AGAACTGCGAAATGATCTTAGTCTATGATTACATGGCTCATGGTACAATGAGGGAGCATC 2006
Query 1962 TCTACAAAACCCAGAATCCTTCTCTTCCGTGGAAGCAACGTCTTGAGATATGCATCGGGG 2021
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 2007 TCTACAAAACCCAGAATCCTTCTCTTCCATGGAAGCAACGTCTTGAGATATGCATTGGAG 2066
Query 2022 CAGCCCGGGGCTTGCATTATCTACACACTGGTGCAAAACACACAATCATCCACAGAGATG 2081
||||||| || || || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2067 CAGCCCGAGGTTTACACTATCTACACACTGGTGCAAAACACACAATCATCCATAGAGATG 2126
Query 2082 TGAAGACAACAAACATTCTATTGGATGAGAAATGGGTGGCCAAGGTCTCTGATTTCGGGC 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2127 TGAAGACAACAAACATTCTATTGGATGAGAAATGGGTGGCCAAGGTCTCTGATTTTGGTC 2186
Query 2142 TCTCAAAGACTGGTCCTACACTAGACCACACACACGTAAGCACGGTCGTGAAAGGAAGTT 2201
| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2187 TATCGAAGACTGGTCCTACACTAGACCACACACACGTAAGCACAGTTGTGAAAGGAAGTT 2246
Query 2202 TCGGTTATCTTGACCCAGAGTATTTCAGACGGCAGCAACTGACTGAGAAATCCGATGTCT 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 TCGGTTATCTTGACCCAGAGTATTTCAGACGGCAGCAACTGACTGAGAAATCCGATGTCT 2306
Query 2262 ACTCCTTTGGCGTCGTTCTATTCGAAGCCCTATGCGCACGGCCAGCCTTGAACCCAACAC 2321
||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 2307 ACTCCTTTGGCGTTGTTCTATTCGAAGCTCTATGCGCTCGTCCAGCCTTGAACCCAACAC 2366
Query 2322 TTGCAAAGGAACAAGTGAGCTTAGCTGAGTGGGCACCATACTGCTACAAGAAAGGCATGC 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2367 TTGCAAAGGAACAAGTGAGCTTAGCTGAGTGGGCACCATACTGCTACAAGAAAGGCATGC 2426
Query 2382 TTGATCAAATAGTCGATCCCTATCTCAAGGGCAAGATCACACCTGAATGCTTCAAAAAGT 2441
| |||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2427 TAGATCAAATCGTTGATCCCTACCTCAAGGGCAAGATCACACCAGAATGCTTCAAAAAGT 2486
Query 2442 TTGCTGAAACCGCGATGAAGTGTGTACTAGACCAGGGCATTGAGAGACCATCAATGGGAG 2501
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2487 TTGCTGAAACCGCGATGAAGTGTGTTCTAGACCAGGGCATTGAGAGACCATCAATGGGAG 2546
Query 2502 ATGTTCTGTGGAACTTAGAATTTGCGTTGCAGCTCCAGGAAAGCGCAGAGGAGAGCGGAA 2561
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 2547 ATGTTCTGTGGAACTTAGAATTTGCGTTGCAGCTCCAGGAAAGCGCAGAAGAGAACGGAA 2606
Query 2562 AAGGAGTGGGCGGTGACATGGACATGGATGAGATTAAGTACGATGATGGCAACTGTAAAG 2621
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2607 AAGGAGTATGCGGTGACATGGACATGGATGAGATTAAGTACGATGATGGAAACTGTAAAG 2666
Query 2622 GAAAGAACGACAAGAGTTCTGATGTGTATGAAGGGAATGTGACGGACTCGAGGAGCAGTG 2681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2667 GAAAGAACGACAAGAGTTCTGATGTGTATGAAGGGAATGTGACGGACTCGAGGAGCAGTG 2726
Query 2682 GAATAGACATGAGCATCGGTGGTCGGAGTTTGGCCAGCGAAGATTCAGATGGACTCACTC 2741
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2727 GAATAGATATGAGCATCGGTGGTAGGAGTTTGGCCAGCGAAGATTCAGATGGACTCACTC 2786
Query 2742 CAAGTGCTGTGTTTTCTCAGATCATGAATCCAAAGGGACGTTAGAGA-GTCTTAAAACAC 2800
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2787 CAAGTGCTGTGTTTTCTCAGATCATGAATCCAAAGGGACGTTAGAGAAGTCTTATAACAC 2846
Query 2801 GGTACA-CTACTACCTACCTTTCTAAACCGGCTCCATCCAAAGGAGACGGGTTCGtttct 2859
|||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2847 GGTACAAC-ACTAC-TACCTTTCTAAACCGGCTCCATCCAAAGGAGACCGGTTCGTTTCT 2904
Query 2860 cctttttatatttttt--c-tcttaactatttattattattctctttgctgttatttatt 2916
| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2905 CTTTTTTATATTTTTTTTCCTCTTAACTATTTATTATTATTCTCTTTGCTGTTATTTATT 2964
Query 2917 tagaattttGGATT-GTGTATTTGATACTACCACGATGGAGAGTGTAAAAAATAATGTAt 2975
|||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 2965 TAGAATTTTGGATTTGTGTATTTGATGC--C-ACGATGGAGAGTGTAAAAAATAATGTAT 3021
Query 2976 ttttttttttttCTTCTTTCTACAAAA-CATTAAACATGAATCGCGTCAATGTACTATTT 3034
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3022 TTTTTTTT----CTTCTTTCTACAAAAACATTAAACATGAATCGCGTCAATGTACTATTT 3077
Query 3035 CGTTTGTTATCTATAACGCTTTTGGTAAT 3063
||||||||||||||||| ||||||||||
Sbjct 3078 GGTTTGTTATCTATAACGTTTTTGGTAAT 3106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152306838948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5