BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485510
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51580.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1050 0.0
> AT3G51580.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages. | chr3:19130768-19133347
REVERSE LENGTH=1963
Length=1963
Score = 1050 bits (568), Expect = 0.0
Identities = 637/670 (95%), Gaps = 6/670 (1%)
Strand=Plus/Plus
Query 842 CTGCTAACTGGTTGATTCTAGTTCAAAATGAAGGTGAGAA-ATCTCTAAAAGCAAAAATT 900
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 987 CTGCTAACTGGTTGATTCTAGTTCAAAATGAAGGTGA-AACATCTCTAAAAGCAAAAATT 1045
Query 901 GTACTTCCGGTTAACTCTTTACAAGAGCTGACACTGCCAAAACACCAGAGTC-AAAGGAT 959
|| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 1046 GTTCTTCCGGTTAACGCTTTACAAGAGCTGACACTGCCAAAACACCAGAGTCAAAAAG-T 1104
Query 960 AAACATATCCATTAGTGGAGACACAAACAAGATCATACTAGACGCTGGAAAAGGAGAGTG 1019
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1105 AAACATATCCATTAGTGGAGATACAAACAAGATCATACTAGATACTGGAAAAGGACAGTG 1164
Query 1020 TGCGCTTCACATGTACCCATCAGAAGAAAACACCTTACCATTCCACTTTCCCTCATATGA 1079
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1165 TGCGCTTCACATGTACCCATCAGAAGAAAGCACCTTACCATTCCACTTTCCCTCATATGA 1224
Query 1080 AAAACTAGTGACGCCCATTAACGGCGCCTATTTCTTAATAGTATCCGTCGTTATTTTTGG 1139
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1225 AAAACTAGTGACGCCCATTAACGGCGCTTATTTCTTAATAGTATCCGTCATTATTTTTGG 1284
Query 1140 GGGAATTTGGGCATTCTGTCTGTGCCGGAAGAATCGCCGTGCAGGCACTGGAGTGCCTTA 1199
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1285 GGGAATTTGGGCATTCTGTCTTTGCCGGAAGAATCGCCGTGCAGGCAGTGGAGTGCCTTA 1344
Query 1200 CCGTGAGCTAGAACTGAGCGGAGGACCAGGCTTGGAAAACGAGTCAGTGGTCCATGATGT 1259
||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1345 CCGTGAGCTAGAATTGAGTGGAGGACCAGGCTTGGAAAACGAGTCAGGGGTCCATGATGT 1404
Query 1260 GGAGACAGCGGACTGGGACGAGGGTTGGGATGATGATTGGGATGAGAATAATGCTGTGAA 1319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GGAGACAGCAGACTGGGACGAGGGTTGGGATGATGATTGGGATGAGAATAATGCTGTGAA 1464
Query 1320 ATCGCCCGGTGGTGCAGCAAAGAGTGTGAGCATCTCTGCCAATGGCTTAACAGCGAGGGC 1379
|||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1465 ATCGCCGGGTAGTGCAGCAAAGAGTGTTAGCATATCTGCCAATGGCTTAACAGCGAGGGC 1524
Query 1380 TCCGAACCGAGATGGCTGGGATCATGACTGGGACGACTAGAGAT-TTTGTGTTATAATCA 1438
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1525 TCCAAACCGAGATGGCTGGGATCATGACTGGGACGACTAGAG-TGTTTGTGTTATAATCA 1583
Query 1439 GTGGATACTATTACAGAAGAGTCAAAACCACTTGGATACAGTTTACTGCAAAGAAGACGT 1498
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1584 TTGGATACCATTACAGAAGATTCAAAACCACTTGGATACAGTTTACTGCAAAGAAGGCAA 1643
Query 1499 GACAGGaaaa 1508
||||||||||
Sbjct 1644 GACAGGAAAA 1653
Score = 946 bits (512), Expect = 0.0
Identities = 697/781 (89%), Gaps = 34/781 (4%)
Strand=Plus/Plus
Query 78 GCCTGAACTGTGATCTGCGGAATCTGCGATGCGTTTTGGACGACTAGACCACTGATACCC 137
|||||||||||||||||| | |||||||||||||||| | ||||||||||||||
Sbjct 159 GCCTGAACTGTGATCTGC-GTATCTGCGATGCGTTTT----G----GACCACTGATACCC 209
Query 138 TGAAAAATGAGCTTCTGGTGCAAA-TTT----T-C---AA--A--TTTGGATCGAATCAA 184
||||| ||||||| ||| |||||| ||| | | || | |||||||| ||||||
Sbjct 210 TGAAATATGAGCTGCTGCTGCAAATTTTCAAATCCAGTAAGTATCTTTGGATCAAATCAA 269
Query 185 GACCACCACCGGCTAATAAATCAACCGATCGAGTCATAAATTAGGGTTTGACCCTGATTG 244
|| |||||||||| |||||||||| ||| ||| |||||| |||||||||||| || ||||
Sbjct 270 GAGCACCACCGGCGAATAAATCAAGCGAACGAATCATAATTTAGGGTTTGACTCTTATTG 329
Query 245 CAATGGATAGAAG-TCAAGTCTTATCACTTCTTCTATTGATTTTGTTCATCTCCAATGCT 303
| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 330 CGATGGATAGAAGTTC-GGTCTTAACACTTCTTCTATTGATTTTGTTCATCTCCAATGCT 388
Query 304 TCTTCGTTCGATA-TTTCTCGTGAGCTAGTTGATGAAGAAACACACAAGGATAATTCAAA 362
|| || ||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 389 TCCTCCTTCGATAGATT-TCGTGAGCTAGTTGATGAAGAAACACAAAAGGATAATTCAAA 447
Query 363 TTCAACCACTAAACAAGACTCTCCGTTGCTTAATCCTAAACCCAGT-GGAGATGGTAAAT 421
|||||||||||||||||| ||||||||| |||||||| |||||| | |||||||| ||||
Sbjct 448 TTCAACCACTAAACAAGAGTCTCCGTTGATTAATCCTCAACCCA-TCGGAGATGGAAAAT 506
Query 422 CTAATGTTACCTCATCAGAACCTACTCTGCCAACTAGTAATTCGACGGATC-CTAATCCT 480
||||||| |||||||||||||| ||||||||||||||||||||||| || | ||||||||
Sbjct 507 CTAATGTGACCTCATCAGAACCAACTCTGCCAACTAGTAATTCGAC-GAACACTAATCCT 565
Query 481 AAAGAGCCTGATTCAGTGAGTCCACCTCCGCCACTGCTACCTGGAATTGAGAGGAATGAT 540
||||||||||||||| ||||||||||||| |||||| |||||| || ||||| |||||||
Sbjct 566 AAAGAGCCTGATTCAATGAGTCCACCTCCTCCACTGATACCTGTAAATGAGAAGAATGAT 625
Query 541 ACCAAAGTGTTAAATGCAACAGAGCCGATAAGCCCGCCTCCGCCTCCAGCGAACCTAACC 600
|| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 626 ACTAAAGTGTTAAATACAACCGAGCCGATGAGCCCGCCTCCGCCTCCAGCGAACCTAACG 685
Query 601 GATAGCCAGGATAGTGGAAAGCTACCGGCTAAAATGGCGCCGCCTCCAAAAAGTTTGGAG 660
||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 686 GATAGTCAGGATAGTGGAAAGCTACCGGCTAACATGGCACCGCCTCCAAAGAGTTTGGAG 745
Query 661 AGTGGAAAAAATGTGACGA-ATCCAGGTAAGGAGAGTCCGCCTCTGGCTAAAGATCCTGA 719
||||| ||||||| ||| | | ||||||||||||||||| ||| |||||||||||||||
Sbjct 746 AGTGGGAAAAATGAGAC-AGAGCCAGGTAAGGAGAGTCCTCCTTTGGCTAAAGATCCTGC 804
Query 720 TAAGGCG-AAGGATGATAAGGGGAGCTCAGAGTCTGCCAGTGTAGAGACCTGTGTAGGAA 778
||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 805 TAAGG-GAAAGGATGATAAGGGGAGCTCAGAGTCTGCCAGTGTAGATACCTGTGTAGGAA 863
Query 779 AGTCTAACATATGTAGAACTGAGAATTCATTGGTGGCTTGCACTTTGAGCATTGATAAAG 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 864 AGTCTAACATATGTAGAACTGAGAATTCATTGGTGGCGTGCACTTTGAGCATTGATAAAG 923
Query 839 G 839
|
Sbjct 924 G 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5