BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485511

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G51590.1 | Symbols: LTP12 | lipid transfer protein 12 | chr3...   699    0.0  


> AT3G51590.1 | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135665-19136675 
REVERSE LENGTH=544
Length=544

 Score =  699 bits (378),  Expect = 0.0
 Identities = 482/531 (91%), Gaps = 11/531 (2%)
 Strand=Plus/Plus

Query  1    AAAATGGCGTTTGCTCCAAAGATCATCACATGCCTCATCGTCCTTACGATTTACATGGCA  60
            |||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct  19   AAAATGGCGTTTACTCCGAAGATCATCACATGCCTCATTGTCCTTACGATCTACATGGCA  78

Query  61   TCCCCAACAGAGTCAACCATCCAGTGTGGGACAGTGACAAGCACACTGGCACAGTGCGTA  120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | 
Sbjct  79   TCCCCAACAGAGTCAACCATCCAGTGTGGGACAGTGACGAGCACACTGGCACAGTGCCTG  138

Query  121  AATTACTTGACCAACAGTGGTCCACTGCCATCAGAATGCTGCGTGGGAGTCAAATCATTG  180
            |  ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct  139  ACCTACTTGACCAACAGTGGTCCATTGCCATCACAATGCTGCGTGGGAGTCAAGTCATTG  198

Query  181  TACCAAATGGCTCAGACCACACCGGACCGCAAACAAGTATGTGAGTGCCTTAAAGCAA-C  239
            |||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | |
Sbjct  199  TACCAATTGGCTCAGACCACACCGGACCGTAAACAAGTATGTGAGTGCCTTAAA-CTAGC  257

Query  240  GGGTAAAGAAATCAAGGGGCTAAATACCGACCTTGTGGCCTCACTTCCTACCACTTGTGG  299
            |||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||
Sbjct  258  GGGTAAAGAAATCAAGGGCCTCAACACCGACCTTGTGGCCGCACTTCCTACCACTTGTGG  317

Query  300  TGTTTCAGTTCCCTACCCCATCAGTTTCAGCACTAATTGTGACAGTATATCGACTGCCGT  359
            ||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct  318  TGTTTCAATTCCCTACCCCATCAGTTTTAGCACCAATTGCGACAGTATATCGACTGCCGT  377

Query  360  GTGAAAGAG-CTAG-GCTACTGAT-TAGATGACTTATCAAAGTTGCCAGCTTTTAACCCA  416
            ||||||||| |||| | | | ||| ||   |||| |||||| |||||||||||||||| |
Sbjct  378  GTGAAAGAGGCTAGTGAT-CAGATGTAC--GACTAATCAAACTTGCCAGCTTTTAACCTA  434

Query  417  ATTAAATAAAAGTATTTTGCTGTTATATTTCCCATTTTGTGATTTTCATTTTCCTATCTA  476
            |||||||||||||||| |||| | |||||||||||||| ||||||| || ||| ||||||
Sbjct  435  ATTAAATAAAAGTATTCTGCT-T-ATATTTCCCATTTTATGATTTT-ATCTTCTTATCTA  491

Query  477  TGTAATCAAACCATTTCATATGCTAATAATGACAACGGATCTCTCACTCTC  527
            ||||| || || |||||||||||||||||||||||||||||| || |||||
Sbjct  492  TGTAACCACACGATTTCATATGCTAATAATGACAACGGATCTTTCTCTCTC  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25217541794


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5