BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485521
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51670.1 | Symbols: | SEC14 cytosolic factor family protein... 2270 0.0
AT2G15670.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 108 2e-22
> AT3G51670.1 | Symbols: | SEC14 cytosolic factor family protein
/ phosphoglyceride transfer family protein | chr3:19168850-19171150
FORWARD LENGTH=1594
Length=1594
Score = 2270 bits (1229), Expect = 0.0
Identities = 1410/1493 (94%), Gaps = 30/1493 (2%)
Strand=Plus/Plus
Query 1 CCAACaaaaacaaaatcaag-aaa-gaaaaa-aaaaaCTCTCAAGAAACAATGGATGCTT 57
||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 13 CCAACAAAATCAAAATCAAGAAAACAAAAAAGAAAAACTCTCAAGAAACAATGGATGCTT 72
Query 58 CATTGTCTCCATTCGATCACCAAAAAACTCAAAACACAGAACCAAAGAAAAGCTTCATAA 117
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 73 CATTGTCTCCATTCGATCACCAAAAAACTCAAAACACAGAGCCAAAGAAAAGCTTCATTA 132
Query 118 CCTCACTAATCACTCTCCGTTCAAACAACATCAAAGAAGACACATACTTCGTCTCAGAAC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CCTCACTAATCACTCTCCGTTCAAACAACATCAAAGAAGACACATACTTCGTCTCAGAAC 192
Query 178 TCAAACCCACCGAGCAAAAATCACTTCAAGAACTCAAAGAAAAGCTCAAAGCTTCATCTT 237
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 193 TCAAACCCACGGAGCAAAAATCACTTCAAGAACTCAAAGAAAAGCTCTCAGCTTCATCCT 252
Query 238 CCAAAGCTTCTTCAATGTGGGGAGTCTCACTCCTCGGTGGAGACGACAAAGCTGACGTAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CCAAAGCTTCTTCAATGTGGGGAGTCTCACTCCTCGGTGGAGACGACAAAGCTGACGTAA 312
Query 298 TCCTCCTCAAGTTCCTCAGAGCAAGAGATTTCAAAGTAGCAGACTCTTTAAGGATGCTTG 357
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 313 TCCTCCTCAAGTTCCTCAGAGCAAGAGATTTCAAAGTAGCAGACTCTTTGAGAATGCTTG 372
Query 358 AAAAGTGTTTGGAGTGGAGAGAAGAGTTTAAAGCAGAGAAATTGACTGAAGAAGATCTGG 417
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 373 AGAAGTGTTTGGAGTGGAGAGAAGAGTTCAAAGCAGAGAAATTGACAGAAGAAGATCTGG 432
Query 418 GTTTCAAAGATTTGGAAGGTAAAGTTGCTTACATGAGAGGCTACGACAAAGAAGGACACC 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTTTTAAAGATTTGGAAGGTAAAGTTGCTTACATGAGAGGCTACGACAAAGAAGGACACC 492
Query 478 CAGTTTGTTACAATGCTTATGGTGTGTTTAAagagagagagatgtatgagagagTGTTTG 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 493 CAGTTTGTTACAATGCTTATGGTGTGTTTAAAGAGAAAGAGATGTATGAGAGAGTGTTTG 552
Query 538 GTGATGAAGAGAAGCTTAACAAGTTTCTGAGATGGAGAGTTCAGGTCTTGGAGAGAGGTG 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 553 GTGATGAAGAGAAGCTTAACAAGTTTCTGAGATGGAGAGTTCAGGTTTTGGAGAGAGGTG 612
Query 598 TTAAAATGCTTCATTTTAAACCTGGTGGTGTTAATTCTATTATTCAAGTTACAGATCTTA 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 613 TTAAAATGCTTCATTTTAAACCTGGTGGTGTTAATTCCATTATTCAAGTTACAGATCTTA 672
Query 658 AAGATATGCCTAAGAGAGAGCTTAGAGTTGCTTCTAATCAGATTCTCTCTCTTTTTCAAG 717
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 673 AAGATATGCCTAAGAGAGAGCTTAGAGTTGCTTCTAATCAGATCCTCTCTCTTTTTCAAG 732
Query 718 ATAATTACCCTGAAATGGTTGCTACTAAGATATTCATTAACGTGCCTTGGTACTTCAGTG 777
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 733 ATAATTACCCTGAATTGGTTGCTACTAAGATATTCATAAACGTGCCTTGGTACTTCAGTG 792
Query 778 TAATCTACTCAATGTTCAGCCCTTTCCTGACTCACAGAACAAAGAGCAAGTTTGTGATGT 837
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 793 TGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGT 852
Query 838 CTAAAGAAGGCAATGCAGCTGAAACACTCTACAAATTCATAAGGCCAGAAGATATTCCGG 897
| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 853 CCAAAGAAGGCAATGCAGCAGAAACACTCTACAAGTTCATTAGGCCAGAAGATATTCCGG 912
Query 898 TGCAATATGGTGGCCTTAGCCGTCCAACTGATTCGCAAAACGGACCGCCAAAACCCGCGT 957
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 913 TGCAATACGGTGGTCTTAGCCGTCCTACTGATTCGCAAAACGGACCGCCAAAACCGGCGT 972
Query 958 CTGAATTCTCCATCAAGGGTGGTGAAAAAGTTAACATTCAGATTGAAGGCATTGAGGGTG 1017
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 973 CTGAATTCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGGGTG 1032
Query 1018 GAGCAACCATAACATGGGATATTGTAGTTGGAGGATGGGATTTAGAGTACACTGCAGAGT 1077
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1033 GAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGTACAGTGCAGAGT 1092
Query 1078 TTGTTCCAAACGCTGAAGAGAGTTACGCGATTGTGGTGGAGAAACCGAAGAAGATGAAAG 1137
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1093 TTGTTCCAAACGCTGAAGAGAGTTACGCGATCGTTGTCGAGAAACCGAAGAAGATGAAAG 1152
Query 1138 CTTCAGATGAAGCTGTTTGCAACTCTTTCACAACAGTAGAAGCTGGGAAACTCATTCTCT 1197
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1153 CTACAGATGAAGCTGTTTGCAACTCTTTCACTACAGTAGAAGCTGGGAAGCTCATTCTCT 1212
Query 1198 CTGTTGACAATACTCTGTCTCGCAAGAAGAAAGTCGCTGCTTACCGTTACACTGTCCGGA 1257
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1213 CTGTTGACAATACTCTCTCTCGCAAGAAGAAAGTTGCTGCTTACCGTTACACTGTCCGGA 1272
Query 1258 AATCTACTACAACCGCCTAATCTA-AGACCGTTTTTTCGGAAGATTGGTTTCTTTCTTAT 1316
||||||||||||||| |||||||| | |||| |||||| ||||||||||| ||||||||
Sbjct 1273 AATCTACTACAACCGTCTAATCTATA-ACCGGTTTTTCAGAAGATTGGTTGCTTTCTTAC 1331
Query 1317 TACTACtttttttGGGTGTGTTGAGGG-TTTTCTTTCTTGGGTTTG-G-----G-T---- 1364
||||||||||| ||||||||||||||| |||||||||||||||||| | | |
Sbjct 1332 TACTACTTTTTGTGGGTGTGTTGAGGGGTTTTCTTTCTTGGGTTTGAGTACTAGGTTTGT 1391
Query 1365 -------ACT-A--GGT-CATGTTGAACCGGAAATATCGAAAAATTTGCAAGGAAATCAT 1413
||| | ||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1392 TTTGCTTACTCAACGGTTCATGTTGAACCGGAAATATCGATAAATTTGCGAGGAAATCAT 1451
Query 1414 ATGTATAAATACAATGATTTGTATGACATTTGAATATTTGGC-TTAATATTTT 1465
||||||||| || |||||||||||||||||||| | |||||| ||||||||||
Sbjct 1452 ATGTATAAAAACTATGATTTGTATGACATTTGA-TGTTTGGCCTTAATATTTT 1503
> AT2G15670.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein (TAIR:AT3G51670.1); Has 15 Blast
hits to 15 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:6828133-6829621 FORWARD
LENGTH=582
Length=582
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 785 CTCAATGTTCAGCCCTTTCCTGACTCACAGAACAAAGAGCAAGTTTGTGATGTCTAAAGA 844
||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 338 CTCAA-GTTCTGCCCATTCCTGACTCACAGAACAAAGAGCAAGTTTGTGATGTCCAAAGA 396
Query 845 AGGCAATGCAG 855
|||||||||||
Sbjct 397 AGGCAATGCAG 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5