BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485526
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51720.1 | Symbols: | Plant protein of unknown function (DU... 1766 0.0
AT2G38370.1 | Symbols: | Plant protein of unknown function (DU... 69.4 9e-11
> AT3G51720.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr3:19185051-19186634 FORWARD LENGTH=1408
Length=1408
Score = 1766 bits (956), Expect = 0.0
Identities = 1238/1364 (91%), Gaps = 59/1364 (4%)
Strand=Plus/Plus
Query 1 GAAAACAACAACAGTTTTGATCACTCTCTCTCT-TTA--CT-TCTTCTTCCCAA------ 50
||||||||||||||||||||||||||| ||||| ||| || ||||||||||||
Sbjct 1 GAAAACAACAACAGTTTTGATCACTCTGTCTCTCTTACTCTATCTTCTTCCCAAGTTCTT 60
Query 51 G-CTTTTGATGGCCGAGACCCTAAAACCCTCCCTCGTCGGGGAAATCGACACTTCTGCGC 109
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTTTTGATGGCCGAAACCCTAGAACCCTCCCTCGTCGGGGAAATCGACACTTCTGCGC 120
Query 110 CATTCGAGTCGGTGAGAGAAGCCGCCACTCGTTTTGGCGGATTTGGTTTCTGGAAACCTT 169
| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 121 CTTTCGAGTCCGTGAGAGAAGCCGCCACTCGCTTTGGTGGATTTGGTTTCTGGAAACCTT 180
Query 170 CTTCCCTTAACATCTCTGAAGCTTCTCAGAACGAAGTGGATGACGTAGCTGGTATGGTGG 229
|||||||||||||||| |||||||||||||||||||| || ||| |||| | |
Sbjct 181 CTTCCCTTAACATCTCCGAAGCTTCTCAGAACGAAGT---TG--GTA--TGGT-T--T-- 228
Query 230 CGAAAGCGAGTGAGTTAGAGAAGGAACTGATTGCTAAAGAAGGAGAAACTTTAAAGGTGT 289
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 229 TGAAAGCGAGTGAGTTAGAGAAGGAACTGATTGAGAAAGAAGGAGAAACTTTGAAGGTGT 288
Query 290 TGAAGTCACTCGAGTCCACCAAAGCTATCGTTGAAGAGCTTAAATCAAAGCTACAAAACA 349
|||||||||| ||||| |||||||| || ||||||||||| ||||||||| |||| ||||
Sbjct 289 TGAAGTCACTTGAGTCGACCAAAGCCATTGTTGAAGAGCTCAAATCAAAGATACAGAACA 348
Query 350 AGGAAGAGAAAGAAAACTGTGACATGAATGTTTTCAAGGAATTGAAACAAGCGAAGATGA 409
|||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 349 AGGAGGATAAAGAAAATTGTGACATGAATGTTTTCAAGGAATTGAACCAAGCAAAGATGA 408
Query 410 ATCTGTGCAAGACAACTAAAGATTTGGCAGCTATTCGTGAGTCTGTTGAGTTACTGAACA 469
||||||||||||| || ||||||||||| |||||||| | |||||||| |||||| ||||
Sbjct 409 ATCTGTGCAAGACGACAAAAGATTTGGCTGCTATTCGCGTGTCTGTTGGGTTACTAAACA 468
Query 470 AGAGACTGGAAGAGGAAAGAGCTGCACTTGAGAAGACACGAGAGAGACTAAACTCTGAGA 529
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGAGATTGGAAGAGGAAAGAGCTGCACTTGAGAAGACACGAGAGAGACTAAACTCTGAGA 528
Query 530 ATGCAGCTGAAATGTCCAAGGAGATTCAGAGACTAAGTTATGAAGCTAAGGAGTTTAGTA 589
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 529 ATGCAGCTGAAATGTCCATGGAGATTCAGAGACTAAGTTATGAAGCTAAGGAATTTAGTA 588
Query 590 GAACAGGAGAGAATGCTCGTTATGCGGTTGATAAAGCTGTGGTTGAGATTGAACAAACGA 649
||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 589 GAACAGGAGAGAATGTTCGGTATGCGGTTAATAAAGCTGTGGCTGAGATTGAACAAACGA 648
Query 650 GAAACAAGATTGAAGCTGCTGAGATGCGTTTGATCGCTGCTAGAAAGATGAAGGAAGCTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAAACAAGATTGAAGCTGCTGAGATGCGTTTGATCGCTGCTAGAAAGATGAAGGAAGCTG 708
Query 710 CTAGAGCGGCTGAAGCAGTTGCAATCGCTGAAATCAAGGCCGTTACTagaagaggaagaa 769
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 709 CTAGAGCGGCTGAAGCAGTTGCAATCGCTGAAATCAAGGCGGTTACAAGAAGAGGAAGAA 768
Query 770 gaagaagaagaagaGGAAATGATGATGAGACGCTGCAGGAGGAGATTCTTGAGACGATTC 829
| ||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 769 GGAGAAGAAGAGGAGGAAATGGTGAGGAGACTATGCAGGAGGAGATTCTTGAGACGATTG 828
Query 830 AAGAAACCGCGAGAGAAATCAGAAGCAGTAGGAGGACACTTGAGGAAGGTTTGGAGAAAG 889
| ||||| || |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 829 ATGAAACAGCAAGAGAAATCAGAAGCAGTAGGAGGACACTTGAAGAAGGTTTGGCCAAA- 887
Query 890 TGAATATTACGAAAGTGGAAGCAGAAGAAGGAAAATGGCGGTGGACAGAACAGAGGAGGA 949
| | | | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 888 --A-T-----G---G---AAGCAGAAGAAGGAAATTGGTGGTGGACAGAACAGAGGAGGA 933
Query 950 GATCATCATGTTCGTCCAAGTTCAAGAACCCT--TT-TATGATGGATGTAAATGGTCTAA 1006
|||||||||||||| | ||||||||||||||| || ||||||||||||||| ||||| |
Sbjct 934 GATCATCATGTTCGGCTAAGTTCAAGAACCCTCCTTATATGATGGATGTAAAAGGTCTGA 993
Query 1007 ATATGATGATGAATGGTGATGGGACATCATCCTCAGTTGCTGTCTTGAAACCAACAATGT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 ATATGATGATGAATGGTGATGGGACATCATCCTCAGTTGCTGTCTTGAAACCAACAATGT 1053
Query 1067 CGATTGGGCAGATACTTAGTAGGAAACTACTTCTTGCGGATGAGTCAGCGATGATGATGA 1126
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1054 CTATTGGGCAGATACTTAGTAGGAAACTACTTCTTGCTGATGAGTCAGCGATGATGATGA 1113
Query 1127 ACGGGAGAGTTTCGTTGGGTCAGATTCTTGGAAAGACTAACTTTGGAGATAGAAATGGTG 1186
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1114 ATGGGAGAGTTTCGTTGGGTCAGATTCTTGGAAAGACTAACTTTGGAGATAGA---G--- 1167
Query 1187 AAGGGAAGGAGAAGGAAAAAAGGTTGAATGGGAAGAGGAAGCGGTTTGGATTCGCAAACT 1246
| | ||||| || ||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1168 A-G--AAGGA-AA--AAA---GGTTCAATGGGAAGAGGAAGCGGTTCGGATTCGCAAACT 1218
Query 1247 TGTCTGTGATGTTGAATAaagagagtaagaagaagaataagaagaagaagaTAGCTTTGA 1306
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TGTCTGTGATGTTAAATAAAGAGAGTAAGAAGAAGAATAAGAAGAAGAAGATAGCTTTGA 1278
Query 1307 ACTTAATGTGATGTTAAAAAAGTGATTAAAATGGTCTAATCttt 1350
|||||| || |||||||| ||||||| ||||||||||||||||
Sbjct 1279 ACTTAA-GT--TGTTAAAAGAGTGATTGAAATGGTCTAATCTTT 1319
> AT2G38370.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr2:16072070-16074258 REVERSE LENGTH=1773
Length=1773
Score = 69.4 bits (37), Expect = 9e-11
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 464 TGAACAAGAGACTGGAA-GAGGAAAGAGCTGCACTTGAGAAGACACGAGAGAGACT 518
|||| || | ||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 557 TGAAGAATAAACT-GAATGAGGAAAGAGCTGCACTTGAGAAGACACGCGAGAGACT 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5