BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485528
Length=2889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51740.1 | Symbols: IMK2 | inflorescence meristem receptor-l... 4333 0.0
> AT3G51740.1 | Symbols: IMK2 | inflorescence meristem receptor-like
kinase 2 | chr3:19189049-19192051 FORWARD LENGTH=2919
Length=2919
Score = 4333 bits (2346), Expect = 0.0
Identities = 2737/2921 (94%), Gaps = 46/2921 (2%)
Strand=Plus/Plus
Query 1 ATAATTAGTCTTTTGCTACAAcactcactcactcactt-gtt-catttcctctctcacta 58
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 1 ATAATTAGTCTTTTGCTACAACACTCACTCACTCACTTATTTCCATTACCTCTCTCACTA 60
Query 59 aaaatcaatcttctctctctctctctctatctctatctcCAAAAAACAGAGGAAGCAGAA 118
|||||||| | | | | ||||| |||| | ||| ||||| |||||||||||||| ||||
Sbjct 61 AAAATCAAAC-T-T-T-TCTCTGTCTC-A-CTC--TCTCC-AAAAACAGAGGAAGGAGAA 111
Query 119 CAAACCAAGAACTCAAGCT-CCCTGCTCTTCTCATCTTTCTTCTACGTTTTCTAtttttt 177
||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 112 CAAACCAAGAACTCAAGCTCCCCTGCTCTTCTCATCTTTCTTCTTCGTTTTCTA-TTTTC 170
Query 178 tttCTTCTTTACTCTTTGATTCTTTTGAAATGAATCATCTTTACAAAAACCCATTTCGGA 237
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 171 TTTCTTCTTTATTCTTTGATTCTTTTGAAATGAATCATCTTTACAAAAACCCATTTCGCA 230
Query 238 TTTATGAAATTAGTTTCCATTTCTGCATGAGTCTCCTCTTGTGTTTCTTACTCTTCTCTG 297
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 231 TTTATGAAATTAGTTTCCATTTCTGCGCGAGTCTACTCTTGTGTTTCTTACTCTTCTCTG 290
Query 298 CT-AGAGCTGTTGCAggtggtggtggtggtggtCACTCTTGGGATGGAATCGTGGTGACT 356
|| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 291 CTCA-AGCTGTTGCAGGTGGTGGAGGTGGTGGTCACTCTTGGGATGGAATCGTGGTGACT 349
Query 357 CAGGCGAACTATCAGGCACTCCAAGCAATCAAACACGAACTCATTGACTTCACCGGAGTT 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 350 CAGGCGAACTATCAGGCACTCCAAGCTATCAAACACGAACTCATTGACTTCACCGGAGTT 409
Query 417 CTCAGAAGCTGGAACAACTCTGCCTCCTCTGAAGTTTGCTCCGGCTGGGCTGGAATCAAA 476
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 410 CTCAAAAGCTGGAACAACTCTGCCTCCTCTCAAGTTTGCTCCGGCTGGGCTGGAATCAAA 469
Query 477 TGTCTCCGAGGTCAAGTGGTCGCCATTCAGCTCCCTTGGAAGGGACTTGGTGGCACTATC 536
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 470 TGCCTCCGAGGTCAAGTGGTCGCCATTCAGCTCCCTTGGAAGGGACTTGGCGGTACTATC 529
Query 537 TCCGAAAAGATTGGACAGCTTGGGAGTCTCAGAAAACTTAGCCTCCACAACAATGTTATC 596
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 530 TCTGAGAAGATTGGACAGCTTGGAAGTCTCAGAAAACTTAGCCTCCACAACAATGTTATC 589
Query 597 GCCGGTTCGGTTCCTCGTTCCCTTGGCTACCTCAAGAGCTTGCGTGGAGTCTATCTCTTC 656
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 590 GCCGGTTCGGTTCCTCGTTCCCTTGGCTACCTCAAGAGCCTCCGTGGAGTCTATCTCTTC 649
Query 657 AACAATCGCCTCTCCGGTTCCATCCCAGCCTCACTGGGTAACTGCCCTCTTCTCCAGAAT 716
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 650 AACAATCGTCTCTCGGGTTCCATCCCAGTCTCACTGGGTAACTGCCCTCTTCTCCAGAAT 709
Query 717 CTTGATCTTAGCAGTAACCAGCTAACTGGAGTCATCCCAGC-TAGTCTTGCTGAATCCAC 775
|||||||| |||||||||||||||||||||| |||||| || ||| ||| ||||||||||
Sbjct 710 CTTGATCTCAGCAGTAACCAGCTAACTGGAGCCATCCC-GCCTAGCCTTACTGAATCCAC 768
Query 776 GAGGCTCTATAGGCTCAACCTCAGCTTCAATTCACTGTCCGGTCCCCTTCCGGTTAGTGT 835
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 769 GAGGCTCTATAGGCTCAATCTCAGCTTCAATTCACTTTCCGGTCCCCTTCCGGTTAGTGT 828
Query 836 AGCCAGAGCATATACCCTCACTTTTCTCGATCTTCAGCATAACAACCTCTCTGGTTCGAT 895
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 829 AGCCAGATCATATACCCTCACTTTTCTTGATCTTCAGCATAACAACCTATCTGGTTCGAT 888
Query 896 ACCCGACTTTTTGGTTAATGGCTCCCACCCTCTCAAAACGATGAATCTTGACCATAATCT 955
||| |||||||| || |||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 889 ACCTGACTTTTTCGTCAATGGCTCCCACCCTCTCAAAACGCTGAATCTTGACCACAATCG 948
Query 956 CTTCTCTGGAGCTGTTCCTTTGTCTCTCTGCAAGCATGGTCTGTTGGAAGAGGTTTCTTT 1015
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 949 CTTCTCTGGAGCTGTTCCAGTGTCTCTCTGCAAGCATAGTCTGTTGGAAGAGGTTTCTAT 1008
Query 1016 AAGCCATAACCAGCTCTCAGGTTCTATTCCCAGAGAATGTGGAGCTCTTCCACACCTCCA 1075
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1009 AAGCCATAACCAGCTCTCAGGTTCTATTCCCAGAGAATGTGGAGGTCTTCCACACCTCCA 1068
Query 1076 GAGCCTTGATTTTTCTTACAATTCAATCAACGGAACCATCCCAGACAGTTTCTCCAACCT 1135
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GAGCCTGGATTTCTCTTACAATTCAATCAACGGAACCATCCCAGACAGTTTCTCCAACCT 1128
Query 1136 TTCATCTCTGGTTTCACTAAACCTCGAAAGCAACCACCTCAAAGGCCCAATCCCAGATGC 1195
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TTCATCTCTAGTTTCACTAAATCTCGAAAGCAACCACCTCAAAGGCCCAATCCCAGATGC 1188
Query 1196 CATTGATAGACTGCACAACCTGACAGAGCTTAACCTCAAGAGAAACAAGATCAATGGGCC 1255
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1189 CATTGATAGACTTCACAACCTGACAGAGCTTAACCTGAAGAGAAACAAGATCAATGGGCC 1248
Query 1256 AATCCCAGAGACAATAGGGAACATATCTGGAATCAAACAGCTTGATCTGTCAGAAAACAA 1315
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1249 AATCCCAGAAACAATAGGGAACATATCTGGAATCAAAAAGCTTGATCTGTCAGAAAACAA 1308
Query 1316 CTTCACAGGTCCAATCCCGCTGTCACTAGTCCACCTGGCGAACCTTTCTTCATTCAACGT 1375
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1309 CTTCACAGGTCCAATCCCGCTCTCACTAGTCCACCTGGCGAAGCTTTCTTCATTCAACGT 1368
Query 1376 CTCCTACAACACCCTCTCTGGTCCTGTTCCACCTATTCTCTCCAAGAAGTTCAACTCAAG 1435
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1369 CTCCTACAACACCCTCTCTGGTCCTGTTCCACCTGTCCTCTCCAAGAAGTTCAACTCAAG 1428
Query 1436 CTCTTTCGTGGGGAACATTCAGCTCTGTGGCTACAGCTCCTCAAATCCATGCCCTTCTCC 1495
||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1429 CTCTTTCTTGGGCAACATCCAGCTTTGTGGCTACAGCTCCTCAAATCCATGCCCTGCTCC 1488
Query 1496 AAAAC-CTCATCATCCACTCACCCTTTCACCGACCTCATCACAAGAACCAAGAAAACACC 1554
| | | || ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1489 TGATCAC-CACCATCCCCTCACCCTTTCACCTACCTCATCACAAGAACCAAGAAAACACC 1547
Query 1555 AC-A--GAAAACTCTCTTTGAAAGACATAATCCTAATCGCCATCGGAGCTCTTCTAGCCA 1611
|| | |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1548 ACCACAGAAAACTCTCAGTGAAAGACGTAATCCTAATCGCCATCGGAGCTCTTCTAGCCA 1607
Query 1612 TCCTCCTTGTATTATGCTGCATACTCCTCTGCTGTCTGATCAAGAAACGAGCCGCCTTGA 1671
|||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1608 TCCTCCTTCTACTATGCTGCATACTCCTCTGCTGCCTGATCAAGAAACGCGCCGCCTTGA 1667
Query 1672 AACAAAAAGATGGAAAGGACAAGACATCAGAGAAGACAGTAACTGCAGCTG-CT--G--- 1725
||||||||||||||||||||||||| ||||||||||||||| | |||| || | |
Sbjct 1668 AACAAAAAGATGGAAAGGACAAGACCTCAGAGAAGACAGTATCAGCAGGTGTCGCAGGAA 1727
Query 1726 CA---TCAGCTGGAGGTGAAATGGGAGGAAAGCTGGTTCATTTCGATGGTCCGTTCGTGT 1782
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1728 CAGCATCAGCAGGAGGTGAAATGGGAGGCAAGCTAGTCCATTTCGATGGTCCGTTCGTGT 1787
Query 1783 TCACAGCCGATGATCTCCTCTGTGCCACAGCTGAGATCATGGGGAAAAGCACTTACGGCA 1842
|||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 1788 TCACCGCCGATGATCTGCTCTGTGCCACAGCTGAGATCATGGGGAAAAGTACATATGGCA 1847
Query 1843 CAGCATACAAAGCCACATTGGAGGACGGTAATGAAGTCGCTGTGAAGCGTCTAAGAGAGA 1902
|||||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||
Sbjct 1848 CAGCATACAAGGCCACATTAGAAGACGGCAATGAAGTCGCTGTGAAGCGTCTGAGAGAGA 1907
Query 1903 AAACAACCAAAGGAGTCAAAGAGTTCGAAGGAGAAGTCACAGCTTTAGGCAAGATTCGTC 1962
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1908 AAACAACAAAAGGAGTCAAAGAATTCGAAGGAGAAGTCACAGCTTTAGGCAAGATTCGTC 1967
Query 1963 ACCAGAATCTTCTTGCACTAAGAGCTTACTACTTAGGACCTAAAGGAGAGAAGCTACTCG 2022
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1968 ATCAGAATCTTCTTGCACTAAGAGCTTACTACTTAGGACCTAAAGGAGAGAAGCTTCTCG 2027
Query 2023 TCTTTGATTACATGTCTAAAGGAAGTCTCTCTGCGTTTCTTCACGCTCGAGGACCAGAAA 2082
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2028 TCTTTGATTACATGTCTAAAGGAAGCCTCTCTGCATTTCTTCACGCTCGAGGACCAGAAA 2087
Query 2083 CCCTAATTCCATGGGAAACAAGAATGAAGATAGCAAAAGGAATCAGTCGTGGTTTAGCTC 2142
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 CCCTAATTCCGTGGGAAACAAGAATGAAGATAGCAAAAGGAATCAGTCGTGGTTTAGCTC 2147
Query 2143 ACCTTCACAGCAACGAGAACATGATCCATGAGAATCTCACAGCAAGCAACATTCTCCTCG 2202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 ACCTTCACAGCAACGAGAACATGATCCATGAGAATCTCACAGCAAGCAACATTCTCCTCG 2207
Query 2203 ACGAACAAACCAACGCACACATCGCCGATTACGGTCTCTCAAGACTCATGACCGCCGCCG 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 ACGAACAAACCAACGCACACATCGCCGATTACGGTCTCTCAAGACTCATGACCGCCGCCG 2267
Query 2263 CCGCCACAAACGTAATAGCAACCGCCGGAACATTAGGATACAGAGCACCGGAGTTTTCGA 2322
| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2268 CAGCAACAAACGTAATCGCAACCGCAGGAACATTAGGATACAGAGCACCGGAGTTTTCGA 2327
Query 2323 AGATCAAAAACGCAAGCACTAAGACCGATGTCTACAGCTTAGGGATCATCATATTGGAGC 2382
| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2328 AAATCAAAAATGCAAGCGCTAAGACCGATGTCTACAGCTTAGGAATCATCATATTGGAGC 2387
Query 2383 TTTTGACTGGGAAATCTCCAGGAGAGCCGACGAATGGGATGGATTTGCCTCAATGGGTAG 2442
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2388 TTTTGACTGGGAAATCTCCAGGAGAGCCGACGAATGGGATGGATTTGCCACAATGGGTAG 2447
Query 2443 CTTCGATTGTGAAAGAAGAGTGGACTAATGAAGTTTTTGATCTGGAGCTCATGAGAGAGA 2502
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2448 CTTCGATTGTGAAAGAAGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGAGAGA 2507
Query 2503 CTCAAAGCGTTGGTGATGAGCTTTTGAATACTCTGAAATTAGCTTTACATTGTGTTGATC 2562
| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2508 CACAAAGCGTTGGTGATGAGCTTTTGAATACTTTGAAATTGGCTTTACATTGTGTTGATC 2567
Query 2563 CGTCGCCGGCGGCGAGGCCAGAAGCTAATCAGGTGGTGAATCAGTTGGAGGAGATTAAGC 2622
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 2568 CGTCGCCGGCGGCGAGGCCAGAAGCTAATCAGGTGGTGGAGCAGTTGGAGGAGATTAGGC 2627
Query 2623 CGGAGACTGAAGCGGAGATGGAGACGACGCTGATTGGATCTGGTGGTGAAGGAGGAAAAG 2682
|||||||||||| ||||| ||||||||||| | |||||||||||||||||||||| ||||
Sbjct 2628 CGGAGACTGAAGTGGAGACGGAGACGACGCCGTTTGGATCTGGTGGTGAAGGAGGTAAAG 2687
Query 2683 ATTTAGGGTCAAACGAGGATTAAAGGAAAGTTTTGGGG---A-G--AAT-A-AA-AAAGA 2733
||||||||||||| ||||| |||||||||||||||||| | | || | || |||||
Sbjct 2688 ATTTAGGGTCAAATGAGGAGTAAAGGAAAGTTTTGGGGTTTATGTGAAAGAGAATAAAGA 2747
Query 2734 AG--GG-ACCTATATACAAATACCACATTTTTTATTTTCATTAAT-ATTCTTTGATTCAA 2789
|| || ||| ||||||||||||||||||| | ||||||||| | |||||||||||||
Sbjct 2748 AGAAGGGACCGATATACAAATACCACATTTAT-ATTTTCATTGTTTATTCTTTGATTCAG 2806
Query 2790 GTAAAT-GTAGATAAAAATGGTTTGAAGTTTGTGCTAGTAATGTAATGTAATTTGATTAT 2848
|||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2807 GTAATTTGTAGATAAAAATGGTTTGAAGTTTGGGCTAGTAATGTAATGTAATTTGATTAT 2866
Query 2849 TCATTCTTTTTTGTTTGAAGAAGTAATACAATAATTGATTT 2889
||||||||||||| ||||||||||||||| | |||||||||
Sbjct 2867 TCATTCTTTTTTGGTTGAAGAAGTAATACGAGAATTGATTT 2907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143577790866
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5