BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485533
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51780.1 | Symbols: ATBAG4, BAG4 | BCL-2-associated athanoge... 1269 0.0
> AT3G51780.1 | Symbols: ATBAG4, BAG4 | BCL-2-associated athanogene
4 | chr3:19206768-19208310 REVERSE LENGTH=1203
Length=1203
Score = 1269 bits (687), Expect = 0.0
Identities = 806/860 (94%), Gaps = 21/860 (2%)
Strand=Plus/Plus
Query 1 TCTCATACTCCGATTCCTTGTCG-AAAACGATGATGCATAATTCAACCGACGAATCGGAA 59
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 103 TCTCATACTCCGATTCATTGTCGAAAAACGATGATGCATAATTCAACCGAAGAATCGGAA 162
Query 60 TGGGAGGTGAGACCTGGTGGTATGCTCGTCCAACGAAGAGACGACACCGCTTCCTCCGA- 118
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 163 TGGGAGGTGAGACCTGGTGGTATGCTCGTCCAACGAAGAGACGACGCCGCTTCCTCCGAC 222
Query 119 C-C-AACCTCTCCAGGATCCCGACTCTGCTTCCGCCGCTTTTGCTCAAACCATCAGAATC 176
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACAAACCTCTCCAGGATCCCGACTCTGCTTCCGCCGCTTTTGCTCAAACCATCAGAATC 282
Query 177 ACTGTTTCTCATGGCTCATCCCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGGG 236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 283 ACTGTTTCTCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGGG 342
Query 237 GATGTGAAGAAAGCCCTTGTTCAAAAAACTGGGTTGGAAGCTAGTGAATTGAAGATCTTG 296
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 343 GATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAATTGAAGATCTTG 402
Query 297 TTCAGGGGAGTTGAGAGAGATGATGCTGAACAATTGCAAGCTGCTGGTGTTAAGGATGCG 356
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTCAGAGGAGTTGAGAGAGATGATGCTGAACAATTGCAAGCTGCTGGTGTTAAGGATGCG 462
Query 357 TCTAAGC---TTGTTCTCGTTGAGGATACGAATAAGAGAGTGGAACAAGTTGAACAGCAG 413
||||||| ||||| | |||||||||||||||||||||||||||| | | |||
Sbjct 463 TCTAAGCTTGTTGTTGTTGTTGAGGATACGAATAAGAGAGTGGAAC-------A-A-CAG 513
Query 414 CCTCCTGTGGTGGTAACCAAAGAGATGGCAAAAGCTATTGCTGCACTTGTTGCGGTTACA 473
||||| | |||||||| |||||||||| ||||||||||||||| || |||||||||
Sbjct 514 CCTCC--T-GTGGTAACTAAAGAGATGGAAAAAGCTATTGCTGCTGTTAACGCGGTTACA 570
Query 474 GGAGAGGTCGATAAGCTCTCGGACAGGGTCGTTGCTTTAGAAGTTGCTGTGAATGGAGGG 533
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 571 GGAGAGGTCGATAAGCTCTCGGATAGAGTTGTTGCTTTAGAAGTTGCTGTGAATGGAGGG 630
Query 534 ACG-AACGTTGCGGTGCGGGAGTTTGACATGACTGCAGAGCTTCTCATGAGGCAGTTGCT 592
||| || |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 631 ACGCAA-GTTGCGGTGCGGGAGTTTGACATGGCTGCAGAGCTTCTTATGAGGCAGCTGCT 689
Query 593 CAAATTGGATGGCATTGAGGCTGAAGGGGAAGCTAAAGTACAGCGTAAGGCAGAGGTACG 652
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 690 CAAATTGGATGGCATTGAGGCTGAAGGGGACGCTAAAGTACAGCGTAAGGCTGAGGTACG 749
Query 653 TAGGGTCCAAAACTTGCAGGAGATTGTGGATAAGTTGAAGGCAAGATGTTCAAATCCGTT 712
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 750 TAGAATCCAAAACTTGCAGGAGGCTGTGGATAAGTTGAAGGCAAGATGTTCAAATCCGTT 809
Query 713 TGTGGATCAGAGCAAAGCCGCAGCTGTAAGCACTGAGTGGGAATCATTCGGAAACGGTGT 772
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 810 TGTGGATCAGAGCAAAGCTGCAGCTGTAAGCACTGAGTGGGAATCGTTCGGAAACGGTGT 869
Query 773 GGGAAGCTTGAACCCTCCTCCGCCAGCTTCGCCTTCAGCCAATGTAACTCAAGATTGGGA 832
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 870 CGGAAGCTTGAACCCTCCTCCGCCAGCTTCGCCTTCGGCCAATGTAACTCAAGATTGGGA 929
Query 833 GAAATTTGACTGACATTTTA 852
||||||||||||||||||||
Sbjct 930 GAAATTTGACTGACATTTTA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5