BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485534
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51790.1 | Symbols: ATG1, TG1 | transmembrane protein G1P-re... 1567 0.0
> AT3G51790.1 | Symbols: ATG1, TG1 | transmembrane protein G1P-related
1 | chr3:19209585-19210744 REVERSE LENGTH=1160
Length=1160
Score = 1567 bits (848), Expect = 0.0
Identities = 1076/1179 (91%), Gaps = 43/1179 (4%)
Strand=Plus/Plus
Query 1 ATTTTTCCAGAAAACCCCATAAACCTCTTCTCACTTTCTCCGGAATTTGATTGATTCCCA 60
||||||||||||||||||||||| | | |||| | |||| |||||||||||||||||||
Sbjct 1 ATTTTTCCAGAAAACCCCATAAA-C-C-TCTCGC--TCTCGGGAATTTGATTGATTCCCA 55
Query 61 CGA-G---aa--aa---------aaaaTGGCGGCTAGATTGTTGTTCCGTCGAAGTTCTC 105
||| | || || |||||||| ||||| || |||||||||||||||||||
Sbjct 56 CGAGGAAAAATCAATCTTCCCGGAAAATGGCAGCTAGGTTATTGTTCCGTCGAAGTTCTC 115
Query 106 AAATCCTCCGATCTATTCAAAGAAATCCTCAAATCTCATCATCATTCGAAT---CTCCTT 162
||||||||||||| |||||| ||||||||||||||||||| |||||||||| | ||||
Sbjct 116 AAATCCTCCGATCAATTCAACGAAATCCTCAAATCTCATCGTCATTCGAATCACCACCTT 175
Query 163 CCCCGATTTTTTATTCATTGACCACCGCTTCACCAGATCCATCGCGATTATCATCCTTAA 222
|||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 GCCCGATTTTTCACTCATTGACCACCGCCTCACCAGATCCATCGCGATTATCATCCTTAA 235
Query 223 CCTTCCTCCGATCTCTCTCCATCGCTCGTCGTGGTCCAACGCGTCCTAAGAAGATCGATA 282
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 236 CCTTCCTCCGATCTCTCTCCATCGCTCGTCGCGGTCCAACACGTCCTAAGAAAATCGATA 295
Query 283 TAGGAGCCAAAGCGCGTCAGATGCAGAATCGCCGTTTGTGGACCTACGCTCTAACCTTCA 342
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 296 TCGGAGCCAAAGCGCGTCAGATGCAGAATCGCCGTTTATGGACCTACGCGCTAACCTTCA 355
Query 343 GCTGCATCGCCGGATTCGTAGTTATCGTCCTCAACCAATTCCAGGATCAGCTCGTCTTCT 402
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 356 GCTGCATCGCCGGATTCGTAGTTATCGTCCTTAACCAATTTCAGGATCAGCTTGTCTTCT 415
Query 403 ACCTAACGCCATCTGACGCTATGGAGAAATTCGCAGAGAATCCAACCAAGAACAAATTCA 462
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 416 ACCTAACGCCATCAGACGCTATGGAGAAATTCGCAGAGAATCCAACAAAGAACAAATTCA 475
Query 463 GACTCGGTGGTTTGGTTCTAGAAGGTAGCGTTGCGCAACCGGCGGCGTCACAGGAGATGG 522
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 GACTCGGTGGTTTGGTTCTAGAAGGTAGCGTTGCGCAGCCGGCGGCGTCACAGGAGATGG 535
Query 523 AATTTGTGATCACCGATCTGATTACAGATATTTTGGTTAGATACAAAGGATCTTTGCCGG 582
| ||||||||||| |||||||| || |||||||||||||| || ||||||||||||||||
Sbjct 536 AGTTTGTGATCACTGATCTGATCACTGATATTTTGGTTAGGTATAAAGGATCTTTGCCGG 595
Query 583 ATCTGTTTAGGGAAGGTCACTCAGTTGTTGTTGAAGGATTCATTAAGCCGTATACGGATG 642
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 596 ATCTGTTTAGGGAAGGTCATTCAGTTGTGGTTGAAGGATTCATTAAGCCGTATACAGATG 655
Query 643 AAGTGAGGAAGGAAGTTTCTACAAAACCTGTTTCGCAGAAAGCTAGGAATCTCGATTGTT 702
|||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 656 AAGTAAGGAAGGAAGTTTCTACAAAACCTATTTCGAAGAAAGCTAGGAACCTCGATTGTT 715
Query 703 TCTTCTCGGCGACGGAAGTTTTAGCTAAGCATGATGAGAAGTATATGCCACAGGAAGTTG 762
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 716 TCTTCTCGGCGACTGAAGTTTTGGCTAAGCATGATGAGAAGTATATGCCACAGGAAGTTG 775
Query 763 CGGCGGCGATTGAAAAGAATAAGAAGATTATTGAAGCAGCGGCGGGGGCCACTGAACAAG 822
||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 776 CGGCGGCGATTGAGAAGAATAAGAAAATTATTGAAGCGGCGGCG------ACTGAACAAG 829
Query 823 CTGCTGAAGTAGTGGCTTCTTAGTTTGGTATAAACTTCATTCTTTTTTAAGTTTATCGAA 882
|||||||||| | |||||||||| ||||||||||||||||||||||| ||||| ||| ||
Sbjct 830 CTGCTGAAGTTGCGGCTTCTTAGATTGGTATAAACTTCATTCTTTTT-AAGTTAATCAAA 888
Query 883 TTTTTCCCCAAGTTCGAGCTTTTGGTGGGTATTATTGTTCATCTTATAATGATATATTTG 942
|||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||
Sbjct 889 ATTTTCCCCAAGTTCGAGCTTTTGGTGAGTATT---GTTCATCTTATAAGGTTATATTTG 945
Query 943 ATTATAGTTTTTGGAAAAAGACTAGGAAGATTGGAATGGTT-TATTCCTGGAAAACAGAG 1001
|||||||||| ||||||| || |||||||||||||||| || ||||||||||||||||||
Sbjct 946 ATTATAGTTTCTGGAAAA-GAGTAGGAAGATTGGAATG-TTATATTCCTGGAAAACAGAG 1003
Query 1002 ATTTGATTTT-GAGTCTATTTGAGAATTAGGAGGAGAAATGTGATGATACACACTATACA 1060
|||||||||| |||||||||||||||||| | ||||||||||||| | ||| ||||||
Sbjct 1004 ATTTGATTTTTGAGTCTATTTGAGAATTAAGTGGAGAAATGTGAT-A--CAC--TATACA 1058
Query 1061 ATAGTTTTGTTTGATCCCACAAAGCTATAAGCTAATCTACTTTCTTGTTATGTTGATCAA 1120
|||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1059 ATAGCTTTGTTTGATTCCACAAAGCTATAAGCTAATCTACTTTCTTGTTGTGTTGATCAA 1118
Query 1121 ATAAAGAAACACTTTGACGAGGGATCAAATTTGCTGCTT 1159
|||||||| ||||||||||||||||||||| ||||||||
Sbjct 1119 ATAAAGAA-CACTTTGACGAGGGATCAAATATGCTGCTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5