BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485538
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51830.1 | Symbols: ATG5, SAC8 | SAC domain-containing prote... 2013 0.0
> AT3G51830.1 | Symbols: ATG5, SAC8 | SAC domain-containing protein
8 | chr3:19220121-19225280 FORWARD LENGTH=2071
Length=2071
Score = 2013 bits (1090), Expect = 0.0
Identities = 1243/1313 (95%), Gaps = 25/1313 (2%)
Strand=Plus/Plus
Query 730 AAGCTACCAAGTTGCTGAGCTAAAGCTCAAGAATTCTCCTGCTGTGATATCGATAATTTC 789
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 710 AAGTTACCAAGTTGCTGAGCTAAAGCTCAAGAATTCTCCTGCTGTGGTATCGATAATGTC 769
Query 790 CAGGCGCTGTACACGACGTCTAGGTACACGTATGTGGAGAAGAGGAGCCAATCTTGAAGG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CAGGCGCTGTACACGACGTCTAGGTACACGTATGTGGAGAAGAGGAGCCAATCTTGAAGG 829
Query 850 GGACGCTGCTAATTTTGTCGAATCTGAACAAATAGTGGAGATTAATGGTTTCAAGTTCTC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GGACGCTGCTAATTTTGTCGAATCTGAACAAATAGTGGAGATTAATGGTTTCAAGTTCTC 889
Query 910 ATTATTGCAGGTTCGAGGTTCAATCCCACTTATTTGGGAGCAGATCGTTGATTTGAGCTA 969
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 890 ATTATTGCAGGTTCGAGGTTCAATCCCACTTCTTTGGGAGCAGATCGTTGATTTGAGTTA 949
Query 970 TAAGCCAGGGCTTAAGATAAATAAGCATGAAGAGACGCCAAAAGTTGTACAGCGCCATTT 1029
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TAAGCCACGGCTTAAGATAAATAAGCATGAAGAGACGCCAAAAGTTGTACAGCGCCATTT 1009
Query 1030 CCATGATCTTTGCCAAAGATATGGAGAAATTATTGCAGTTGACCTAACAGATCAGCATGG 1089
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1010 CCATGATCTTTGCCAAAGATATGGAGAAATTATGGCAGTTGACCTAACAGATCAGCATGG 1069
Query 1090 AGATGAAGGTGAATTAAGCAAAGCATATGCCACTGAAATGGAGAAGCTTCCAGATGTGAG 1149
||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1070 AGATGAAGGTGCATTAAGCAAAGCATATGCCACCGAGATGGAGAAGCTTCCTGATGTGAG 1129
Query 1150 ATATGTCTCCTTTGACTTCCATCAAATCTGTGGAACTACAAACTTTGACAACCTGAGGGT 1209
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 1130 ATATGTCTCCTTTGACTTCCATCAAGTCTGTGGAACTACAAACTTCGACAACCTGGGGGT 1189
Query 1210 ACTGTATGAGCAGATTGGGGATGAATTTGAAAAGCAAGGATATTTCCTTGTAGACGCAGA 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ACTGTATGAGCAGATTGGGGATGAATTTGAAAAGCAAGGATATTTCCTTGTAGACGCAGA 1249
Query 1270 CGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CGAGAACATCCTAGAAGAGCAGAAAGGAGTTATCAGATCTAACTGCATCGACTGTCTTGA 1309
Query 1330 CCGCACAAATGTTACCCAGAGTTACATGGGCCAGAAAAGTGTGAATCTACAACTTCAAAG 1389
||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 1310 CCGCACAAATGTTACCCAGAGTTTCATGGGCCAAAAAAGTCTGAATCTACAACTTCAAAG 1369
Query 1390 GATCGAAGTGTTTGATTCCACAGATTGTATATCCACGTTTGAAGATGATTACACAAAGTT 1449
||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1370 GATCGGAGTGTGCGATTCCACAGAGTGTATATCCACGTTCGAAGATGATTACACAAAGTT 1429
Query 1450 CAGAACAATTTGGGCTGAGCAAGGGGACGAAGTTAGTTTGCAATATGCCGGGACCTATGC 1509
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1430 CAGAACAATTTGGGCTGAGCAAGGGGACGAGGTTAGTTTGCAATATGCCGGGACATATGC 1489
Query 1510 TCTTAAGGGCGACCTCGTAAGGTACGGGAAGCAGACTATGACTGGAGCCATCAAAGATGG 1569
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1490 TCTTAAGGGCGACCTCGTAAGGTACGGGAAACAGACTATGACTGGAGCTATCAAAGATGG 1549
Query 1570 TCTCAGTGCGATGTCGAGATATTATCTGAATAATTTCCAAGATGGTG-A--------TGC 1620
|||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1550 CCTCAGTGCAATGTCGAGATATTATCTGAATAATTTCCAAGATGGTGTAAGGCAGGATGC 1609
Query 1621 TTTGGATCTCATAAGTGGTCGCTACACAGTGGGCACTCACAGCCCTTCACAACTCCAGCC 1680
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1610 TTTGGACCTCATAAGTGGTCGCTACACAGTGGGCACACACAGCCCTTCACAACTCCAGCC 1669
Query 1681 CATTGGATCACAACCGTCTTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAAC 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CATTGGATCACAACCGTCTTTTCTGCCGGTAGCATCAGCATTGTTGATAGGTGGTGTAAC 1729
Query 1741 AGTGACATCTTTCACAATTCATCAAGCGGGAAGAAACACGCAGCAGTATCTGGCGTCAGC 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1730 AGTGACATCTTTCACAATTCATCAAGCGGGAAGAAACACGCAGCAGTATCTGGCGTCGGC 1789
Query 1801 ATTGTGGGCTGGAGTGACTGCAGGAGTTGTGGCAATGATCAAAGCCAATGGAAGGCACTT 1860
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1790 TTTGTGGGCTGGAGTGACTGCAGGAGTTGTGGCGATGATCAAAGCCAATGGAAGGCACTT 1849
Query 1861 GTGTTCAAGGCCTCGTCTTTGCCATCTCATTTGATTA-ATATT-ATTTGAGATTCTCTGT 1918
| |||||||||||||||||||||||| |||||||| || || | |||||||| | ||
Sbjct 1850 GACTTCAAGGCCTCGTCTTTGCCATCTAATTTGATTCCAT-TTGAATTGAGATTATTTGC 1908
Query 1919 GTCTCACATTCTTCCCAAAACCCACGCCCACTGTCCCTCTTT--T--C------AACGTC 1968
||||||||||||||||||||||||| |||||||||||||||| | | ||||||
Sbjct 1909 GTCTCACATTCTTCCCAAAACCCACACCCACTGTCCCTCTTTGCTTTCTCGTTCAACGTC 1968
Query 1969 CGCACaaa--aaaaTTCGAACTAAAAGTCCATAGTACTGAACTTCTTTAGTTC 2019
|||||||| |||| |||||||||||||| ||| ||||||||||||||| |||
Sbjct 1969 CGCACAAACCAAAAATCGAACTAAAAGTCTATATTACTGAACTTCTTTA-TTC 2020
Score = 1022 bits (553), Expect = 0.0
Identities = 663/713 (93%), Gaps = 20/713 (3%)
Strand=Plus/Plus
Query 1 TTTCTCCTGATCCAGTTATTGATTGAACAAACTCCAACA--A-CAT--TCATCATCATCC 55
||||||||||||||||| || |||||||||||||||||| | ||| ||||||||||||
Sbjct 1 TTTCTCCTGATCCAGTTCTTAATTGAACAAACTCCAACAGCATCATCATCATCATCATCC 60
Query 56 TTC--A--A--------ATTTTGGAAAATTTATTTGAAAATCTCAGAATTTGCGTTAATG 103
||| | | |||||| |||||||||||| |||||||| ||||| ||||||||
Sbjct 61 TTCAAATTATTTTTCCTATTTTGAAAAATTTATTTG-AAATCTCATAATTTACGTTAATG 119
Query 104 GAGATCGTTCCATCTTCAAGTAGATTCAAGCTCTACGATCAATTCGAGCTTCTAGAGTTT 163
||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 GAGATTGCTCCATCTACAAGTAGATTCAAGCTCTACGATCAATTCGAGCTTCTGGAGTTT 179
Query 164 CCTGACAAGTACGTCGTCAAACCCATCGAATCGCCTGAGGAAGGCTTCTCCGTCGATCGG 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CCTGACAAGTACGTCGTCAAACCCATCGAATCGCCTGAGGAAGGCTTCTCCGTCAATCGG 239
Query 224 CGCGATGGCAACATCAAACCTCTTGATGAAAACGCATCTTCTGGGAATCCTACTAAAGTC 283
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 240 CGCGATGGCAATATCAAACCTCTTGATGAAAACGCATCTTCTGGGAGTCCTACTAGAGTC 299
Query 284 TCTACTATATATGGCGTAGGAGGAACTATTAGGCTCTTAGCAGGAACATACTTGCTAGTT 343
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTACTATCTATGGCGTAGGAGGAACTATTAGGCTCTTAGCAGGAACATACTTGCTAGTT 359
Query 344 GTAACGTCTCGGGAAGAAGTTGGGAATTTTCTCGGTTTTCCGATTTTTAGAGTTACGGCT 403
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 360 ATAACGTCTCGGGAGGAAGTTGGAAATTTTCTCGGTTTACCGATTTTTAGAGTTACGGCT 419
Query 404 ATG-AATTTTCTACCTTGCAATGAGGCTGTGAGGTTTGCTACTGCTCAAGaaaaaaaGGA 462
||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 ATGAAATTCT-TACCTTGCAATGAGGCTTTGAGGTTTGCTACTGCTCAAGAAAAAAAGGA 478
Query 463 CGAAACATATTTTAGGACTCTGTTACAAGCACTTGAGACAACCCCTGGATTGTATTTTTC 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGAAACATATTTTAGGACTCTGTTACAAGCACTTGAGACAACCCCTGGATTGTATTTTTC 538
Query 523 ATATGAAACTGATCTTACATTAAACCTGCAAAGAAGGTGCAAGCTAGCTGAAGGTTGGAA 582
|||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 539 GTATGAAACAGATCTAACATTGAATCTTCAAAGAAGGTGCAAGCTAGCTGAAGGTTGGAA 598
Query 583 GCGTAAGCCTATGTGGAAGCAGGCTGACCCTCGATATGTTTGGAACTGGCATCTTCTGGA 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 TCGTAAGCCTATGTGGAAGCAGGCTGACCCTCGATATGTTTGGAACTGGCATCTTTTGGA 658
Query 643 GGAGTTAATTGAATGCAAACTGGATGGTTTTATTATTCCTCTACTTCAAGGAA 695
||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 GGACTTAATTGAATGCAAACTGGATGGTTTTATTATTCCTATACTTCAAGGAA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053697085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5