BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485539
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51840.1 | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 |... 2383 0.0
> AT3G51840.1 | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4
| chr3:19225360-19229163 REVERSE LENGTH=1759
Length=1759
Score = 2383 bits (1290), Expect = 0.0
Identities = 1428/1493 (96%), Gaps = 16/1493 (1%)
Strand=Plus/Plus
Query 33 ATCACGAAGCCAAAG-A-AATTTCTCCATCACGATCATAGCCATGACGGTGCTTTCATCT 90
||||||||||||||| | ||||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 114 ATCACGAAGCCAAAGAACAATTTCTCCGTCACTATCATAACCATGGCGGTGCTTTCATCT 173
Query 91 GCAGATCGAGCTAGTACTGAGAAGAAGGTGAAGAGTTCATATTTTGATTTGCCGCCTATG 150
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 174 GCAGATCGAGCTAGTAATGAGAAGAAGGTGAAGAGTTCATACTTTGATTTGCCACCTATG 233
Query 151 GAAATGTCTGTAGCATTTCCTCAAGCAACTCCAGCTTCTACATTTCCACCGTGCACTTCA 210
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 234 GAAATGTCTGTAGCATTTCCTCAAGCAACTCCAGCCTCTACATTTCCACCTTGTACTTCA 293
Query 211 GACTATTATCATTTCAATGATCTATTGACTCC-GAAGGAACAAGCCATCCGGAAGAAAGT 269
|||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||
Sbjct 294 GACTATTATCATTTCAATGATCTACTGACTCCGGAA-GAACAAGCTATCCGGAAGAAAGT 352
Query 270 GAGGGAATGCATGGAGAAAGAAGTTGCCCCCATAATGACAGAGTACTGGGAGAAAGCAGA 329
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 353 GAGGGAATGCATGGAGAAAGAAGTTGCTCCAATAATGACAGAGTACTGGGAGAAAGCAGA 412
Query 330 ATTTCCATTCCATATCACTCCAAAGCTTGGGGCTATGGGTGTTGCTGGTGGCTCGATTAA 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 413 ATTTCCATTCCATATCACTCCAAAGCTTGGGGCTATGGGTGTTGCTGGTGGCTCGATCAA 472
Query 390 GGGTTATGGATGTCCTGGCCTATCCATCACCGCCAATGCAGTTGCCACTGCAGAAATAGC 449
|||||||||||||||||| || |||||||||||||||||| ||||||| |||||||||||
Sbjct 473 GGGTTATGGATGTCCTGGTCTCTCCATCACCGCCAATGCAATTGCCACAGCAGAAATAGC 532
Query 450 TAGAGTTGATGCAAGTTGTTCGACTTTCATTTTGGTGCATTCTTCTTTGGGCATGCTCAC 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TAGAGTTGATGCAAGTTGTTCGACTTTCATTTTGGTGCATTCTTCTTTGGGCATGCTCAC 592
Query 510 TATTGCACTTTGTGGATCAGAAGCGCAGAAGGAGAAGTATTTACCTTCTTTGGCTCAATT 569
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 593 TATTGCACTCTGTGGATCAGAAGCACAGAAGGAGAAGTATTTGCCTTCTTTGGCTCAATT 652
Query 570 GAATACCGTGGCTTGTTGGGCTTTGACAGAGCCCGACAATGGAAGCGATGCAAGTGGTCT 629
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAATACTGTGGCTTGTTGGGCTTTGACAGAGCCCGACAATGGAAGCGATGCAAGTGGTCT 712
Query 630 AGGAACGACTGCCACAAAGGTTGAAGGAGGTTGGAAAATTAAGGGACAAAAGCGTTGGAT 689
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 713 AGGAACGACTGCAACAAAGGTTGAAGGAGGTTGGAAAATTAATGGACAAAAGCGTTGGAT 772
Query 690 TGGAAACAGCACCTTTGCAGATCTGTTGATCATCTTTGCTAGGAATACAACAACTAACCA 749
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 TGGAAACAGCACCTTTGCAGATCTGTTGATCATCTTTGCGAGGAATACAACAACTAACCA 832
Query 750 AATCAACGGATTCATAGTCAAGAAAGATGCGCCTGGCCTAAAGGCTACTAAGATCCCAAA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AATCAACGGATTCATAGTCAAGAAAGATGCGCCTGGCCTAAAGGCTACTAAGATCCCAAA 892
Query 810 TAAAATAGGTTTACGTATGGTTCAAAATGGAGATATTCTACTACAGAATGTCTTTGTTCC 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TAAAATAGGTTTACGTATGGTTCAAAATGGAGATATTCTACTACAGAATGTCTTTGTTCC 952
Query 870 AGATGAGGATCGGTTACCTGGGGTAAATTCTTTTCAGGACACCAGCAAGGTCCTGGCTGT 929
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 953 AGATGAGGATCGGTTACCTGGGGTAAATTCTTTTCAGGACACCAGCAAGGTTCTGGCTGT 1012
Query 930 CTCACGTGTAATGGTTGCCTGGCAACCAATCGGCATATCCATGGGAATCTACGATATGTG 989
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1013 CTCACGTGTAATGGTGGCCTGGCAACCAATCGGCATATCAATGGGAATCTACGATATGTG 1072
Query 990 TCACAGGTATCTGAAGGAGAGGAAACAGTTTGGAGCACCATTGGCTGCTTTCCAGTTAAA 1049
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1073 CCACAGGTATCTGAAGGAGAGGAAACAGTTTGGAGCACCGTTGGCTGCTTTCCAGTTAAA 1132
Query 1050 CCAACAGAAGCTTGTGCAGATGCTGGGTAATGTTCAAGCGATGTTCCTAATGGGTTGGCG 1109
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1133 CCAACAGAAGCTTGTGCAGATGCTGGGTAACGTTCAAGCGATGTTTCTAATGGGTTGGCG 1192
Query 1110 CCTCTGCAAGCTATATGAGACGGGTCAGATGACTCCAGGTCAAGCCAGTTTAGGAAAGGC 1169
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TCTCTGCAAGCTGTATGAGACGGGTCAGATGACTCCAGGTCAAGCCAGTTTAGGAAAGGC 1252
Query 1170 ATGGATTACATCGAAAGCGAGGGAAACTGCTTCGCTAGGTCGGGAATTACTTGGTGGGAA 1229
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATGGATTTCATCAAAAGCGAGAGAAACTGCTTCGCTAGGTCGGGAATTACTTGGTGGGAA 1312
Query 1230 TGGAATTCTAGCAGATTTTCTGGTGGCAAAGGCATTCTGTGACCTTGAACCTATTTACAC 1289
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 1313 TGGAATTCTAGCAGATTTTCTGGTAGCAAAGGCTTTCTGTGACCTTGAACCCATTTATAC 1372
Query 1290 ATACGAAGGGACTTATGATATAAACACCTTAGTAACAGGGAGGGAAGTAACGGGTCTTGC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1373 ATACGAAGGGACTTATGATATAAACACCTTAGTAACAGGGAGGGAAGTAACGGGTATTGC 1432
Query 1350 GAGTTTCAAACCGGCTACACGGAGCCGTCTCTAAGTTAAAAGGTTGTGC-TGTGTTTGTT 1408
||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||
Sbjct 1433 GAGTTTCAAACCGGCTACACGTAGCCGTCTCTAAGTTAAAAGGTTGTCCAT-TGTTTGTT 1491
Query 1409 GTTA-CTGCTGGTTAGTATTGATATTGTAATGTGGGGTTTACATCTACAAATCACAAATG 1467
||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1492 GTTGTCTGTTGGTTAGTATTGATATTGTGATGTGGGGTTTACATCTACAAAT-------G 1544
Query 1468 TGCCAAATAATCTGACCTTAAAAA-ATTTAGGGTCCAATGGGGGAATAATATC 1519
||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1545 TGCCAAATAATCTGACCC-AAAAAGATTTAGGGTCCAATGGGGGAATAATATC 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5