BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485541
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51860.1 | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation... 2261 0.0
AT2G38170.3 | Symbols: CAX1, ATCAX1, RCI4 | cation exchanger 1 ... 826 0.0
> AT3G51860.1 | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation
exchanger 3 | chr3:19239427-19242913 FORWARD LENGTH=1805
Length=1805
Score = 2261 bits (1224), Expect = 0.0
Identities = 1355/1418 (96%), Gaps = 10/1418 (1%)
Strand=Plus/Plus
Query 1 CAGATGTAGTAGAATCAAAACGTACGTCTTAGAACTATGGGAAGTATCGTGGAGCCAT-G 59
|||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |
Sbjct 1 CAGATGTAGTAGAATC-AAA---ACGTCTTAAAAC-ATGGGAAGTATCGTGGAGCCATGG 55
Query 60 G--GCAATCGCCGAGAACGGAAACGCAAACGCGACCGCAAAAGGGTTAAGCAGAGAGCTG 117
| |||||||||||||||||||||||||||| |||||| ||||| | ||||| ||||||
Sbjct 56 GCAGCAATCGCCGAGAACGGAAACGCAAACGTGACCGCGAAAGGCTCGAGCAGGGAGCTG 115
Query 118 CGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCTAAGAAAGAAATCAGACCTG 177
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 116 CGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCTAAGGAAGAAATCAGACCTG 175
Query 178 AGATTGATTCAGAAAGTTCCATGCAAAACTCTTAAGAACATTCTCTCCAATCTTCAAGAA 237
|||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 176 AGATTGGTTCAGAAAGTTCCATGCAAAACTCTCAAGAACATTCTCTCTAATCTTCAAGAA 235
Query 238 GTCATTCTTGGTACTAAGCTTACTCTCTTGTTTCTCGCCATCCCTCTCGCCATTCTCGCC 297
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 236 GTCATTCTTGGTACTAAGCTTACTCTCTTATTTCTCGCCATCCCTCTCGCCATTCTTGCC 295
Query 298 AATTCTTACCACTACGCTCGTCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCT 357
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AATTCTTACAACTACGGTCGTCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCT 355
Query 358 CTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTG 415
Query 418 GGAGGTTTGTTGAACGCGACTTGTGGAAACGCAACGGAGCTGATAATCGCGATACTAGCG 477
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 416 GGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCG 475
Query 478 TTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATCCTCTCGAAC 537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 476 TTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATTCTCTCAAAC 535
Query 538 CTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGAAGGGAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 536 CTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGCCGCGAG 595
Query 598 CAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGTCTGTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 596 CAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGCCTGTTG 655
Query 658 TGTCATTTGCTGCCGTTATTGTTAAAATATGCAGCAACCGGTGAAGCATCGACCTCTCTG 717
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| ||
Sbjct 656 TGTCATTTGCTGCCATTATTGTTAAAATATGCAGCAACCGGCGAAGTATCGACCTCTATG 715
Query 718 ATTAACAAAATGTCGCTTACTCTGTCGCGTACTAGCAGCATACTTATGCTTATTGCTTAC 777
||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||
Sbjct 716 ATTAACAAAATGTCGCTCACTCTGTCGCGGACAAGCAGCATAGTTATGCTTATTGCTTAC 775
Query 778 ATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTTTTTGAGGCACAAGAGgat 837
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 776 ATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTGTTTGAGGCACAACAGGAT 835
Query 838 gatgatgatgcatatgatgatgaGGTTACTGTTGAAGAAACTCCAGTGATAGGATTCTGG 897
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 836 GATGATGATGCATATGATGATGAGGTTAGTGTTGAAGAAACTCCAGTGATAGGATTCTGG 895
Query 898 AGCGGATTTGCTTGGCTCGTTGGGATGACAATCCTCATAGCATTGCTATCAGAGTATGTT 957
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 896 AGCGGATTTGCTTGGCTCGTTGGGATGACAATAGTCATCGCATTGCTATCAGAGTATGTT 955
Query 958 GTGGCCACTATTGAGGATGCATCGGACTCATGGGGACTATCAGTGAGTTTCATAAGCATC 1017
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTGGACACGATCGAGGATGCATCGGACTCATGGGGACTATCAGTGAGTTTCATAAGCATC 1015
Query 1018 ATATTGCTTCCCATTGTTGGGAACGCGGCTGAGCACGCTGGAGCCATCATTTTCGCATTC 1077
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1016 ATATTGCTTCCCATTGTTGGGAATGCGGCTGAGCATGCTGGAGCCATCATTTTCGCATTC 1075
Query 1078 AAGAACAAGCTCGACATATCTCTAGGGGTTGCGTTGGGCTCTGCAACTCAAATTTCTTTG 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1076 AAGAACAAGCTCGACATATCTCTAGGGGTTGCGTTGGGCTCTGCAACTCAGATTTCTTTG 1135
Query 1138 TTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTAGGAATAAAAATGGATCTCAAC 1197
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1136 TTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTGGGAATAAAAATGGATCTCAAC 1195
Query 1198 TTCAACATCCTTGAAACTAGCTCTCTAGCTTTGGCCATTATCATCACAGCCTTCACATTA 1257
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1196 TTTAACATCCTTGAAACTAGCTCTCTAGCTTTGGCCATTATCATCACAGCCTTCACTTTA 1255
Query 1258 CAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTATTGTTGTGCTATGTCATCATC 1317
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1256 CAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTATTGTTATGCTATGTCATCATC 1315
Query 1318 GCGGCCTGTTTCTTCGTCGACCAAATTCCCCAGCCAAATGGTATAGACGTGGGACTTCAA 1377
||||| |||||||||||||||||||||||||| ||||||| | | |||||||||||||||
Sbjct 1316 GCGGCGTGTTTCTTCGTCGACCAAATTCCCCAACCAAATGATTTGGACGTGGGACTTCAA 1375
Query 1378 CCCATGAACAATTTGGGAGAAGTTTATC-CAGCTTAAA 1414
||||||||||||||||||||||||| || |||||||||
Sbjct 1376 CCCATGAACAATTTGGGAGAAGTTT-TCTCAGCTTAAA 1412
Score = 171 bits (92), Expect = 3e-41
Identities = 143/164 (87%), Gaps = 18/164 (11%)
Strand=Plus/Plus
Query 1412 AAA-TATGATTTGATTGATTCGTCATCCAAAA-CAGAG-GACTTTGTCAGAGGGATTCCT 1468
||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 1457 AAATTATGATTTGATTGATTCGTCATCCAAAAACGGAGAGACTTTGTCAGAGGGATTCCT 1516
Query 1469 CAAGCATGAAAATGAGGGAGGGAGCTTGATGAAGACA----TT-T--------AAGAAGT 1515
|||||||||| ||||||||||||||||||||||||| || | ||||| |
Sbjct 1517 CAAGCATGAA--TGAGGGAGGGAGCTTGATGAAGACAGAGGTTCTTGGTGTTTAAGAAAT 1574
Query 1516 GATCACATTAATTGCTGTTTGCTTTCTTTTTCTGTTTGTTGTTG 1559
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1575 GATCACATTAATTTCTGTTTGCTTTCTTTTTCTGTTTGTTGTTG 1618
> AT2G38170.3 | Symbols: CAX1, ATCAX1, RCI4 | cation exchanger
1 | chr2:15990045-15993278 REVERSE LENGTH=1596
Length=1596
Score = 826 bits (447), Expect = 0.0
Identities = 1048/1331 (79%), Gaps = 70/1331 (5%)
Strand=Plus/Plus
Query 52 GAGCCATGGGCAATCGCCGAGAACGGAAACGCAAACGCGACCGCAAAAGGGTTAAGCAGA 111
||||| ||| || | || |||||||||||| ||| | || || ||||| | ||||||
Sbjct 119 GAGCCGTGGTCAGTAGCTGAGAACGGAAACCCAAGCATAACGGCGAAAGGATCGAGCAGA 178
Query 112 GAGCTGCGACATGGGAGAACAGCACACAACATGTCTTCATCGTCGCT-AAGAAAGAAATC 170
|| || ||| ||| ||||| || |||||||||||||| || || | | |||| |||||
Sbjct 179 GAACTAAGACTTGGAAGAACCGCTCACAACATGTCTTCTTCTTCTTTGAGGAAA-AAATC 237
Query 171 AGACCTGAGATTGATTCAGAAAGTTCCATGCAAAACTCTT-AAGAACATTCTCTCCAATC 229
|||||| || |||||||||| ||||||| |||| |||| ||| | ||||||| ||||
Sbjct 238 AGACCTCCGAGTGATTCAGAAGGTTCCATACAAAGGTCTTAAAG-ATTTTCTCTCTAATC 296
Query 230 TTCAAGAAGTCATTCTTGGTACTAAGCTT-AC-TCTCTTGTTTCTC-GCCATCCCT-CTC 285
| |||||||||||||| || || |||||| | | |||| |||| | ||||| ||| | |
Sbjct 297 TCCAAGAAGTCATTCTCGGAACAAAGCTTGCCAT-TCTT-TTTC-CGGCCATTCCTGC-C 352
Query 286 GCCA-T-TCT-CGCCAATTCTTACCACTACGCTC-GTCCGTT-GATATTTGGACTGAGCT 340
|||| | | | | || ||| | | | | | || | || || |||||||||||| ||||
Sbjct 353 GCCATTATTTGCACCTATTGTGGCGTC-A-G-TCAG-CC-TTGGATATTTGGACTTAGCT 407
Query 341 TGATAGGGCTGACACCTCTAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCT 400
|| |||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 408 TGCTAGGACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCT 467
Query 401 ACACTGGTCCAACAGTGGGAGGTTTGTTGAACGCGACTTGTGGAAACGCAACGGAGCTGA 460
|||| ||||| ||| |||| ||| | |||||||| || ||||||||||| || || |||
Sbjct 468 ACACCGGTCCTACATTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGA 527
Query 461 TAATCGCGATACTAGCGTTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGG 520
|||||||||| || || ||| ||||||||||||| |||||||||||||| || || | |
Sbjct 528 TAATCGCGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCTGCTAG 587
Query 521 GTTCAATCCTCTCGAACCTTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCG 580
|||| || | ||||||||| | |||||||| || ||||| ||||||| ||| || ||||
Sbjct 588 GTTCGATTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCG 647
Query 581 CCAATATCCGAAGGGAGCAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGC 640
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 648 CTAATATCCGAAGGGAACAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTAC 707
Query 641 TGCTTA-TGGGTCTGTTGTGTCATTTGCTGCCGTTATTGTTAAAATA--TGCAGCAACCG 697
| | || ||||| | |||||||| |||||||| || ||| | ||| || | || ||
Sbjct 708 TTC-TACTGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGGATACTTG-A-AAAACG 764
Query 698 GTGAAGCATCGACCTCTCTG-ATT-AACAAAATGTC-GCTTACTCTGTCGCGTA--CTAG 752
| || || ||| || ||| || | | ||| | || | | | ||||| | ||
Sbjct 765 GAGAGGCTTCG-GCT-GCTGTTTTGTCCGACATG-CAACTGAGTATATCGCG-AGGCT-T 819
Query 753 CAGCATACTTATGCTT-AT-TGCTTACATTGCTTATCTCATCTTCCAGCTCTGGACTCAC 810
||| || ||||| || || || |||||||| ||||| | ||||| || |||||||||
Sbjct 820 CAGTATTGTTATG-TTGATCAGC-TACATTGCATATCTTGTTTTCCAACTGTGGACTCAC 877
Query 811 CGCCAATTTTTTGAGGCACAAGAGgatgatgatgatgcatatgatgatgaGGTTACTGTT 870
|||||||| || || |||||||| | || ||||| | |||||||| || | ||
Sbjct 878 CGCCAATTGTTCGATGCACAAGAACAGGAAGATGA-G--TATGATGACGA---T-GTGGA 930
Query 871 G-AAGAAACTC-CAGTGA-TAGGATTCTGGAGCGGATTTGCTTGGCTCGTTGGGATGACA 927
| ||||||| | | |||| || | || |||||||| ||||| ||| | ||||||||||||
Sbjct 931 GCAAGAAAC-CGCGGTGATTA-GTTTTTGGAGCGGTTTTGCATGGTTGGTTGGGATGACA 988
Query 928 ATCCTCATAGCATTGCTATCAGAGTATGTTGTGGCCACTATTGAGGATGCATCGGACT-C 986
|| | || ||||||||||| ||||||||||| ||||| |||||||| |||||||| |
Sbjct 989 CTCGTTATCGCATTGCTATCGGAGTATGTTGTAGCCACGATTGAGGAAGCATCGGA-TAA 1047
Query 987 ATGGGGAC-TATCAGTGAGTTTCATAAGCATCATATTGCTTCCCATTGTTGGGAACGCGG 1045
|| || || |||||||||||||||||||||||||||||||||| |||||||| || || |
Sbjct 1048 AT-GGAACTTATCAGTGAGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAATGCAG 1106
Query 1046 CTGAGCACGCTGGAGCCATCATTTTCGCATTCAAGAACAAGCTCGACATATCTCTAGGG- 1104
|||| || ||||||||| | ||||| || || ||||||||||| ||||||||| | |||
Sbjct 1107 CTGAACATGCTGGAGCCGTTATTTTTGCCTTTAAGAACAAGCTTGACATATCTTT-GGGA 1165
Query 1105 GTTGCGTTGGGCTCTGCAACTCAAATTT-CTTTGTTCGTGGTCCCATTGAGTGTTATCGT 1163
|||||||| |||||||| ||||| ||| ||| ||||| ||||| |||| | |||||
Sbjct 1166 GTTGCGTTAGGCTCTGCGACTCAGATTGGCTTA-TTCGTTGTCCCCTTGACCATCATCGT 1224
Query 1164 TGCGTGGATCCTAGGAATAAAAATGGATCTCAACTTCAA-CATCCTTGAAACTAGCTCTC 1222
|||||||| | ||||| || ||||||||||| || | ||| |||||| ||| ||
Sbjct 1225 GGCGTGGATTTTGGGAATTAATATGGATCTCAATTTTGGTCC-CCTCGAAACTGGCTGTC 1283
Query 1223 TAGCT-TTGGCCATTATCATCACAGCCTTCACATTACAGGATGGAACTTCTCATTACATG 1281
| ||| || |||| ||||||||||| ||||||||||||||||| | |||||| ||||||
Sbjct 1284 TTGCTGTTT-CCATAATCATCACAGCGTTCACATTACAGGATGGGAGTTCTCACTACATG 1342
Query 1282 AAGGGACTGGTTCTATTG-TTGTGCTATGTCATCATCGCGGCCTGTTTCTTCGTCGACCA 1340
||||||||||| || ||| || |||||| |||| || || |||||||||||||||| |
Sbjct 1343 AAGGGACTGGTCCTCTTGCTT-TGCTATTTCATTATTGCCATCTGTTTCTTCGTCGAC-A 1400
Query 1341 AA-TTCCCCAG 1350
|| ||||||||
Sbjct 1401 AACTTCCCCAG 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5