BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485548
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51910.1 | Symbols: AT-HSFA7A, HSFA7A | heat shock transcrip... 1149 0.0
> AT3G51910.1 | Symbols: AT-HSFA7A, HSFA7A | heat shock transcription
factor A7A | chr3:19265294-19266619 FORWARD LENGTH=819
Length=819
Score = 1149 bits (622), Expect = 0.0
Identities = 735/790 (93%), Gaps = 6/790 (1%)
Strand=Plus/Plus
Query 46 ccaccaccacaaccacaaccaATGGAGGGTTTACACGAAATTGGC-CCACCTCCATTTCT 104
|||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 34 CCACCACCACCACCACAACCAATGGAGGGTTTACACGAAAAT-GCTCCACCTCCATTTCT 92
Query 105 GACCAAGACATTTGAGATGGTGGATGATCCAAATACTGACCACATCGTTTCTTGGAACAG 164
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 93 GACCAAGACATTTGAGATGGTGGATGATCCAAACACTGACCACATCGTATCTTGGAACAG 152
Query 165 AGGAGGCACTAGCTTTGTCGTTTGGGATTTGCATTCTTTCTCTACGATTCTTCTCCCTCG 224
|||||| || || |||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 153 AGGAGGAACAAGTTTTGTCGTCTGGGATTTGCATTCTTTCTCCACGATTCTCCTTCCTCG 212
Query 225 ACATTTCAAACACAGCAATTTCTCAAGTTTCATCAGACAACTCAATACTTATGGTTTCAG 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TCATTTCAAACACAGCAATTTCTCAAGTTTCATCAGACAACTCAATACTTATGGTTTCAG 272
Query 285 AAAGATAGAAGCAGAGAGATGGGAATTTGCAAACGAAGGGTTCTTGTTAGGACAAAGACA 344
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 273 AAAGATAGAAGCAGAGAGATGGGAATTTGCAAACGAAGAGTTTTTGTTAGGACAAAGACA 332
Query 345 GTTGTTGAAGAACATCAAGAGAAGAACAACCTTTAGTACTTCTTCATCTCCACCAAGCCA 404
||||||||||||||||||||| |||| | ||||| |||| | |||||| ||||||||||
Sbjct 333 GTTGTTGAAGAACATCAAGAGGAGAA-ACCCTTT--TACTCCATCATCTTCACCAAGCCA 389
Query 405 TGACGCTTGCAACGAGCTTCGCAGGGAGAAACAATTGCTATTGATGGAGCTGGTAAGTCT 464
|||||||||||||||||||||||| ||||| ||| ||||| |||||||| | || |||||
Sbjct 390 TGACGCTTGCAACGAGCTTCGCAGAGAGAAGCAAGTGCTAATGATGGAGATAGTGAGTCT 449
Query 465 GAGACAGCAGCAACAAACTACGAAAAGCTACGTCAAAGCTGTGGAACAGAGGATAGAAGG 524
||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 450 AAGACAGCAGCAACAAACAACGAAAAGCTACATCAAAGCTATGGAACAGAGGATAGAAGG 509
Query 525 AGCAGAGAGGAAACAGAGACAAATGATGTCGTTTTTGGCTAGAGCAATGCAGACTCCTTC 584
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 510 AACAGAGAGGAAACAGAGACAAATGATGTCGTTTCTGGCTAGAGCAATGCAGAGTCCTTC 569
Query 585 GTTTTTGCATCAGTTGTTGAAGCAGAGAGATAAAAAGATTAAGGAGCTTGAGGATGATGA 644
||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||
Sbjct 570 GTTTTTGCATCAGTTGTTGAAACAAAGAGATAAAAAAATTAAGGAGCTTGAGGATAATGA 629
Query 645 GTCAGCAAAGAGGAAAAGAGGTTCTTCTTCCATGTCGGAATTGGAGGCTTTGGCTTTGGA 704
|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 630 GTCAGCAAAGAGGAAAAGAGGTTCTTCTTCGATGTCGGAATTGGAAGTTTTGGCTTTGGA 689
Query 705 GATGCAAGGGTATGGAAAACAGAGGAATATGTTGGAAGAAGAGGATCATCATTTGGTTGT 764
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 690 GATGCAAGGGCATGGAAAACAGAGGAATATGTTGGAAGAAGAGGATCATCAACTGGTGGT 749
Query 765 AGAAAGAGAGTTGGATGATGGTTTTTGGGAAGAGTTACTTAGTGATGAGAGTTTGGCTTC 824
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 750 AGAGAGAGAGTTGGATGATGGTTTCTGGGAAGAGTTGCTTAGTGATGAGAGTTTGGCTTC 809
Query 825 TACTTC-TAA 833
|| || |||
Sbjct 810 CACCTCCTAA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5