BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485550
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51930.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1971 0.0
> AT3G51930.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:19271624-19273064 FORWARD LENGTH=1441
Length=1441
Score = 1971 bits (1067), Expect = 0.0
Identities = 1313/1427 (92%), Gaps = 36/1427 (3%)
Strand=Plus/Plus
Query 1 TCCAAAATAGAAACGAAATCTTGAATCTCTTGATGCGATGGTGAGATTAATCCAAGAAGG 60
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 12 TCCAAAATAGAAACGAAATCTTGAATCTCTTGATACGATGGTGAGATCAATCCAAGAAGG 71
Query 61 AGTCTTGATGTCTTCATCTTCGTCCTCAACGACAAGCAACAGCAACGACTCTGACGATTC 120
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||
Sbjct 72 AGTCTTGATGTCTTCATCTTCTTCCTCAACCACAAGCAACAGCAACGACTCCGACGGTTC 131
Query 121 CCTCAGCCCATCCGCCTCCACCAAAAGCTTCGTCCTCAACACTCTCCGTCCGCCAATCAC 180
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 132 TCTCAGCCCATCTGCGTCCACCAAAAGCTTCGTCCTCAACACTCTCCGTCCGCCTATCAC 191
Query 181 CGGCGCGTACAAGCCGCTCGCAGTCCTCTCTGCTCACGTAGGCTCTGTTTCTTCCTTGGC 240
||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||| ||
Sbjct 192 CGGCGCGTACAAGCCACTCGCTGTTCTCTCTGCTCATGTCGGCTCTGTTTCTTCCTTAGC 251
Query 241 GCTCTGTGGTGAGTTCTTGTTGAGTGCGTCTCAGGGAAAAGACATCATCGTTTGGCAACA 300
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 252 GCTCTGTGGTGAGTTCTTGCTGAGTGCGTCTCAGGGAAAAGATATCATCGTTTGGCAACA 311
Query 301 GCCTGATCTCAAGATCTTTGCGAAATTCGGACAAGGTGATGGGTCTGTGAAGGCTCTGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 312 GCCTGATCTCAAGATCTTTGCGAAATTCGGACAAGGTGATGGGTCTGTGAAGGCTTTGGT 371
Query 361 CAGCGTGGGAAGCAAAGTGTTCACGGCGCATCAAGACAGTAGAATCAGAGTTTGGAAAGT 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 372 CAGCGTGGGAAGCAAAGTGTTCACGGCGCATCAAGATAGTAGAATCAGAGTTTGGAAAGT 431
Query 421 TTCTCGGAGAAACTCTGAGAATGCTTTCAGGCTTGTCGACACGCTTCCCACGACTAAAGA 480
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 432 TTCTCGGAGAAACTCTGAGAATGCTTTCAGGCTTGTTGATACACTTCCCACGACTAAAGA 491
Query 481 CTATTTGGGGAAGTTTATGAAACAGAGCAATTACGTTCAGACGAGGAGGAATCATAAGCG 540
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 492 CTATCTGGGGAAGTTTATGAAACAGAGCAATTACGTTCAGACGAGGAGGAACCATAAGCG 551
Query 541 TCTCTGGATCGAACACGCTGACAGCATTTCGTGCCTTGCGGTCCACGCCGGGATAATCTA 600
||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct 552 TCTCTGGATTGAACACGCCGATAGCATTTCGTGCCTTGCGGTACACGCTGGGATAATCTA 611
Query 601 CTCTGGATCGTGGGATAAGACTCTCAAAGTCTGGAGATTGTCGGATCTCAAGTGCCTTGA 660
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 612 CTCTGGATCGTGGGATAAGACTCTCAAAGTCTGGAGACTGTCGGATCTCAAGTGTCTTGA 671
Query 661 ATCGATCAAGGCTCACGACGACGCAATCAATGGCCTTGTCGCCGGAGATGGCAGAGTATA 720
||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||
Sbjct 672 ATCGATCAAGGCTCATGATGACGCAATCAATGGTCTTGTCGCCGGAGATGGCAGGGTATA 731
Query 721 CTCTGCTTCTGCAGACGGGAAGATCAAGATTTGGGGGAGAGATAAAAGAAAGCAGATTGA 780
||||||||| ||||| |||||| ||||||| ||||||| ||| || ||||||||||||||
Sbjct 732 CTCTGCTTCCGCAGATGGGAAGGTCAAGATATGGGGGAAAGAGAAGAGAAAGCAGATTGA 791
Query 781 GTCTA---C-T--TCTTCCTCTTCTTTACATGTTCTGAAGGCTACATTGGAGGGTCGTGC 834
||||| | | ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 792 GTCTACTTCTTCCTCTTCCTCTTCTTTACATGTTTTGAAGGCTACGTTGGAGGGTCGTGC 851
Query 835 AGAGGTTTCAGTGAACTCGGTGGTGGTTTCCGGTGACGGGAATTGGGTATACGGAGGAGG 894
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 852 AGAGGTGTCAGTGAACTCGGTGGTGGTTTCCGGTGACGGTAATTGGGTATACGGAGGAGG 911
Query 895 ATCAGATGGGTTTGTGATGGGGTGGGAGAAGAGAGAGAAAG-GGGAAGACTTGGAGGAAT 953
|||||| ||||||||||| || |||||||||| |||||||| || |||||| |||||||
Sbjct 912 ATCAGACGGGTTTGTGATCGGATGGGAGAAGAAAGAGAAAGAAGG-AGACTTTGAGGAAT 970
Query 954 GGAGATTAGGGTTTGAGATGAGAGGACATAACATGGCAGTTCTGTGTATGTGTGTAGTTG 1013
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GGAGATTAGGGTTTGAGACAAGAGGACATAACATGGCAGTTCTGTGTATGTGTGTAGTTG 1030
Query 1014 GGGAAATGGTGTGTAGTGGATCCGCTGATAAGAGCATTGGGTTGTGGAGGAGAGAAACGA 1073
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1031 GGGAAATGGTATGCAGTGGATCGGCTGATAAGAGCATTGGGTTGTGGAGGAGAGAAGTGA 1090
Query 1074 GTGGCATACTCTGTAAATTTGGAGTCATACATGGCCATGAAGGTCCGGTCAAATGCTTGC 1133
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1091 CTGGCATGCTCTGTAAATTCGGAGTCATACATGGCCATGAAGGTCCGGTCAAATGCTTAC 1150
Query 1134 AAGCTTCGCCTAACAATGTCGGTGCTGGCTTCATGCTTTACAGTGGAGGCCTTGACAAGA 1193
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AAGCGTCGCCAAACAATGTCGGTGCTGGCTTCATGCTTTACAGTGGAGGCCTTGACAAGA 1210
Query 1194 GTCTCAGGGTTTGGTGGGTACCAAAACATGACAACTTAGAAGAGAAGAAATCAAGTTTTA 1253
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1211 GTCTCAGGGTTTGGTGGGTACCAAAACAAGACAACTTAGAAGAGAAGAAATCAAGCTTTA 1270
Query 1254 AGACATTGTTGATGCAAAAGGGATGAGTGAAAGAT-TGGT--TTTCATATACGTTTT-GG 1309
|||||||||||| |||||||| ||||||||||||| | || ||| | | |||| ||
Sbjct 1271 AGACATTGTTGACGCAAAAGGAATGAGTGAAAGATATAGTACTTTTTTTTTTTTTTTTGG 1330
Query 1310 -TT--T----ATAT---TT--G-T--A-ATTTGT--T-----ATTCATTTTGTAAAGTCA 1346
|| | |||| || | | | |||||| | ||||||||||||||||||
Sbjct 1331 ATTGGTTTTCATATACGTTTTGGTTTATATTTGTAATTTGTTATTCATTTTGTAAAGTCA 1390
Query 1347 TGAGGGATTTTTCCAAGAAAT-ATATGAATTGAATTCTTATTTTGTT 1392
|||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1391 TGAGGGATTTTTTCAAGAAATTATATGAATTGAATTCTTATTTTGTT 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5