BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485551
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2122 0.0
> AT3G51940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G03990.1);
Has 215 Blast hits to 164 proteins in 38 species: Archae -
0; Bacteria - 35; Metazoa - 16; Fungi - 18; Plants - 121; Viruses
- 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:19273494-19275269
REVERSE LENGTH=1688
Length=1688
Score = 2122 bits (1149), Expect = 0.0
Identities = 1563/1748 (89%), Gaps = 88/1748 (5%)
Strand=Plus/Plus
Query 6 TCCAATTTCCAATTCG-TTGCGTCTTCAGCTCCCAAATTCTCCCGCTGACCCCTAATTTC 64
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||
Sbjct 20 TCCAATTTCCAATTCGTTTGCTTCATCAGCTCCCAAATTCTCCCGCTGACCCCTAAGTTC 79
Query 65 TCCAAAATCCATCACCGTCGATTGAGATTTCTCAATGGGAAAGTGGAATCATCGATCCCG 124
| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
Sbjct 80 TACAAAATCCATCATCGTCGATTGAGA-TTCTTTATGGGAAAGTGGAATCATCGATCCAG 138
Query 125 ATACCACCGTCGCAGATCTCCTGAGCGATGGTATAGC-GAGTGTCATTCATCTTCTTCTT 183
| ||||||||||||| ||||||||||| ||||||||| || |||| |||||||||||
Sbjct 139 ACACCACCGTCGCAGGTCTCCTGAGCGGTGGTATAGCGGA-CGTCA---ATCTTCTTCTT 194
Query 184 CTTCAGACGATGGGATTCCGA-AATGGGAAAAGAGATTCTGTGAGGTGATTGGATCAGTG 242
||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 195 CTTCAGACGATGGGATTCC-AGTTTGGGAAAAGAGATTCTGTGAAGTGATTGGATCAGTA 253
Query 243 CCATGGCAAAAAGTTGTTGAAGCTAAAGACTTTAAGAGCTGGTATAATGGTAATGTTATT 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CCATGGCAAAAAGTTGTTGAAGCTAAAGACTTTAAGAGCTGGTATAATGGTAATGTTATC 313
Query 303 ACTTGGAATGACTCTGCTTGCGAAGAGACTTTTCATAATGAGAAGAAGCGATTTTGGTCA 362
|||||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 314 ACTTGGGATGATTCTGCTTGCGAAGACACTTTTCACAATGAGAAGAAGCGGTTTTGGTCA 373
Query 363 CAAGTTAATGGTCTTCATTGTGATGTGTCTCTTCCTGATCCTGATCTTTACATTAGTGAA 422
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 374 CAAGTTAATGGTCTTCATTGTGATGTTTCTATTCCTGATCCTGATCTTTACATTAGTGAA 433
Query 423 GTAGATTGGGATACTTTTGTTGACCCGGAACTGATTA-AGGATTTAGAAAAGGCTTACTT 481
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 434 GTAGATTGGGATACTTTTGTTGACCCGGAACTGATTAGAG-ATTTAGAAAAGGCTTACTT 492
Query 482 TGCTCCTCCTGATGAAGTGAATATTGGTTTTAAACGACTGCGTCGAGATAGGAATTGGAG 541
||||||||||||||| |||||||||||||||||||| |||| | |||| |||||||||
Sbjct 493 TGCTCCTCCTGATGATGTGAATATTGGTTTTAAACGGGGGCGTGGGGATAAGAATTGGAG 552
Query 542 TGGTTGTGAAATAGTGCCTGTTAAGGAGGCTCGTATGTTAGAAACTCCATGGAAAAATAG 601
||||||||| | |||||||| | || |||||||||||||||||||||||||||||||
Sbjct 553 TGGTTGTGACACAGTGCCTG--A-GG---CTCGTATGTTAGAAACTCCATGGAAAAATAG 606
Query 602 TGACGCCGTCCATGATGTTAGTGCATCGGGGAAGAAATCGAATGGATGGAACCTAACAGA 661
||| | | | || || | | ||||||||||||| | ||||||||||||||||||
Sbjct 607 TGATGACATT-AT--TGA-A----A-CGGGGAAGAAATCTAGTGGATGGAACCTAACAGA 657
Query 662 AGGTAGTACTGATTATCCGATAGATAGGGGGAGTTCTTGGGAAGGCAAGCCTAGTTGTGT 721
|| ||| | || | | | ||| || || ||| | | | |||||||
Sbjct 658 -GG--GTA--G-TT--C---T---T-GGGA-AG--CT----AAG-C---CTT-GTTGTGT 690
Query 722 AAACGAGAAAGTAAATGATACAACATCTGGGGGATGTTTGACGACTGAGGAATGGAAGGA 781
||||||||||| |||||||||| | || ||||| |||||||||||||||||||||| |||
Sbjct 691 AAACGAGAAAGCAAATGATACAGCTTCAGGGGGTTGTTTGACGACTGAGGAATGGAGGGA 750
Query 782 GAACCAGTGGAGAACAAAAGATAGGGTTAATGACTGTTGGGAGAACTCGGGCCAGGGAAA 841
||| ||||||| | | |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 751 GAATCAGTGGATAGCCAAAGATAGGGTTAATGACAGTTGGGAGTACTCGGGCCAGGGAAA 810
Query 842 CGATGATGGATGGGATAAGTCAGGGCACCAAAACAAGAAAGTAAAAGGTTCTGCAAGTGT 901
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 811 GGATGATGGATGGGATAAGTCAGGGCACCAAAACAAGAAAGTAAAAGGTTCTG-AAGAGT 869
Query 902 CCCAGCTGAAGAGGATAAAATGCTCGACAATCCTTGGGAAGCCCAGCCTAGTTGTATAAA 961
| | || | | | | | | |||||||||||||||||||||||||||||||||||
Sbjct 870 ---A--T-AA-A--A-AGA-T-C--GACAATCCTTGGGAAGCCCAGCCTAGTTGTATAAA 915
Query 962 AGAGACAGCAAAAGACACCACTTGGGGAGGTTTCTCTGGTAAGGGATGGGAGGATAGAGG 1021
||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 916 AGAGACAGCAAAAGATACCACTTGGGGAGGTTGCTCTGGTGAGGGATGGGAGGATAGAGG 975
Query 1022 TTGGAATAATGATTCTTGGGGAAGTGGTGGATGGGAAAACCGGGATTTGGGAAATCAAGG 1081
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 976 TTGGAATAATGATTCTTGGGGCAGTGGGGGATGGGATAACCGGGATTTGGGAAATCAAGG 1035
Query 1082 TATAGAGATGAAGGAATGGCGTGGTAAAGGATATAGTCGAGATATTCGGCAGCCTAAGGG 1141
||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1036 TATGGAGATGAAGGAGTGGCGTGGTAAAGGATATAGTCGAGATTTTCGGGAGCCTAAGGG 1095
Query 1142 TTATAATCCATGGAAAGGTGGCTATGTACCTGACAATGTAGCTTTCAGAGAAACTGGGGT 1201
|| |||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||
Sbjct 1096 TTGTAATCCATGGAAAGGTGGGTTTGTGCCTGACAATGTAGCTTTCAGAGAATCTGGGGT 1155
Query 1202 GAATGCAGGTGGTTGGCAAACATGTAGAGGGCGCGAGACAAAGCAAAGAAATTGGGATGT 1261
|||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 1156 AAATGCAGGCGGTTGGCAAACATGTAGAGGGAGTGAGACAAAGCAAATAAATTGGGATGT 1215
Query 1262 GAAACAAGCCAGTGATGGTTGGGGTAGGCAAAATGACAATGCAGCTCTGAGAGAATATGG 1321
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1216 GAAACGAGCCAGTGATGGTTGGGGTAGGCAAAATGACAATGCAGCTTTGAGAGAATATGG 1275
Query 1322 GGCAAATGCAGGCAATTGGCAAACACGTAGAGTGAGTGAGGCAAATCAACGAAATTGGGA 1381
|||||||||||| ||||||||| |||||||| | |||||| ||||||| |||| |||||
Sbjct 1276 GGCAAATGCAGGTGATTGGCAAAGACGTAGAGGGTGTGAGGGAAATCAAAGAAACTGGGA 1335
Query 1382 CGCAAAACGAACGAGTGATGGTTGGGGTAGGCAAAATAAGGAAAGAGATGACTCATATGG 1441
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1336 CGCAAAACGAACGGGTGATGGTTGGGGTAGGCAAAATAAGGAAAGAGTTGACTCATATGG 1395
Query 1442 CTACCATTCTAACTACAAAAACTCATGGCCCAGAAGAGATGATTATCAGAACAGGAAGGT 1501
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1396 CTACCATTCTAACTACAAAAACTCATGGCCTAGAAGAGATGATTATCAGAACAGGAAGGT 1455
Query 1502 CAATTTCTCAGCTAAGTAAACCAAATGATCCATTGTTTTTTGTGATGTGttttttttt-- 1559
|||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1456 CAATTTCTCAACTAAGTAAACCAAATGATCCATTGTTTTTTGTTATGTTTTTTTTTTTTT 1515
Query 1560 -GTGTTTGAAGTCTTAGCTTGTTATGGTCTGTGCAGGCAGTGTAGTTTTAGCTTAGCCAT 1618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TGTGTTTGAAGTCTTAGCTTGTTATGGTCTGTGCAGGCAGTGTAGTTTTAGCTTAGCCAT 1575
Query 1619 TGACCTTCCATGTTATCTCAAAGAGTCAAAGGCATGGTTTTATGTTTCCACTTCAGAATT 1678
|||| |||||||||| |||||| || | ||||||||| ||||||||||||||||||
Sbjct 1576 TGAC-TTCCATGTTAACTCAAA-AG-----G-CATGGTTTTGTGTTTCCACTTCAGAATT 1627
Query 1679 AGCATATGTAGAATATATACAAGTAGTCGGAGTACCCTTTTTGATGATAATGTTTCATAC 1738
|||||||||||| |||||| | | ||||||||||||||||||||||| ||||||
Sbjct 1628 AGCATATGTAGAGTATATA---G--G----AGTACCCTTTTTGATGATAATGTCTCATAC 1678
Query 1739 ATACTAAA 1746
||||||||
Sbjct 1679 ATACTAAA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5