BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485553
Length=2518
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protei... 4017 0.0
AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 363 6e-99
> AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein | chr3:19277778-19281346
REVERSE LENGTH=2540
Length=2540
Score = 4017 bits (2175), Expect = 0.0
Identities = 2433/2550 (95%), Gaps = 48/2550 (2%)
Strand=Plus/Plus
Query 1 TTTGCTTTTTAAAAACAGTTTATTACACAAtctctctgtgtttctctctctctctctctc 60
||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 7 TTTGCTTTTTAAAAACAGTTTATTACACAATCTCTCTGTGTTT-T-T-TCTATCTCTCTC 63
Query 61 tTTGTTCTTCCACTCGT----GAAAGACCAGAGAGTTTTCTCCTGAT---C-C-AC-ACA 110
||| ||||||||||||| |||||||||||||||||||||||||| | | || |||
Sbjct 64 TTTCTTCTTCCACTCGTGAAAGAAAGACCAGAGAGTTTTCTCCTGATCCACACAACAACA 123
Query 111 ACAACACAGAGATCCCAAATCCGGAAGATATCTTCTTCTCTCATAACTCAGTTTACTTAG 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 124 ACAACACAGAGATCCCAAATCCGGAAGATATCTTCTTCTCTCATAACTCAGTTTACTCAG 183
Query 171 ATCCACTGAAACATACAATTAAGTTAACCGTCAGTCTCACACCTGCAGAAAAAATCACTC 230
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 184 ATTCACTGAAACATACAATTAAGTTAACCGTCAGTCTCTCACCTGCAGCAAAATTCACTC 243
Query 231 TTCTTCTAATAATGTTCCTCCACAGAGAGATTCATGTATCGATCATTTTGACTTTTTCAG 290
|||| ||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 244 TTCTGCTAATAATGTT-CTCCAC--AGAGATTCATCTATTGATCATTTTGACTTTTTCAG 300
Query 291 GAACTAGAGATGAAAAATTATAGTTAAAGCTTAGAAGTAGTAGATAGGTTTAATAAATTT 350
|||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 301 GAACCAGAGATGAAAAATTATAGTT-AAGGTTAGTAGTAGTAGATAGGTTTAATAAATTT 359
Query 351 GTAGTTAAGAAAGCCaaaaaaaaaaCATTAAACTAAAATCCAACACTAGAAACCAGAGAG 410
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GTAGTTAAGTAACCCAAAAAAATAACATTAAACTAAAATCCAACACTAGAAACCAGAGAG 419
Query 411 A-CCTCTTAACGACAACAACCTCTCTGTACACAAGACAACAAACACTCTCTACAAAAACA 469
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCCTCTTAACGACAACAACCTCTCTGTACACAAGACAACAAACACTCTCTACAAAAACA 479
Query 470 CTACTC-TT-C--CTTCTTCTCTCTACTCTAATCTAATTCAAAAGAGAGAGAGAAAAGCC 525
|||||| || | |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 480 CTACTCTTTCCTTCTTCTTCTCTCTACTCTATTCTAATTCTAAAGAGAGAGAGAAAAGCT 539
Query 526 ATGGATGGGTATGAAGCTACTAGGATTGTGCTCTCTAGAATCCAAAGCTTAGACCCTGAA 585
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGGATGGATATGAAGCTACTAGGATTGTGCTCTCTAGAATCCAAAGCTTAGACCCTGAA 599
Query 586 AACGCATCAAAGATCATGGGTCTTCTCCTTCTTCAAGATCACGGTGAGAAAGAGATGATA 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 AACGCATCAAAGATCATGGGTCTTCTCCTTCTTCAAGATCACGGTGAAAAAGAGATGATA 659
Query 646 AGGCTAGCTTTTGGTCCAGAGACTCTTGTTCACTCTGTTATAGTGAAAGCCAAGAAAGAG 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGCTAGCTTTTGGTCCAGAGACTCTTGTTCACTCTGTTATAGTGAAAGCCAAGAAAGAG 719
Query 706 TTAGGTCTCATGAACTGTTCAAGGTCTCCATGGAGTCATCAAGATGAGTTAATTAGCCCT 765
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 720 TTAGGTCTCATGAACTGTTCAAGGTCTCCGTGGAGTCATCAAGATGAGTTGATTAGCCCT 779
Query 766 AAGAACAACCGTGGCTCTTCTCTCAATCCTGCTTCTTTGCCCTTTTACGCTAATGGAGGA 825
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 780 AAGAACAACCGTGGCTCTTCACTCAATCCAGCTTCTTTGCCCTTTTACGCTAATGGAGGA 839
Query 826 AGATCTTCTAGGGATTTAACCAACGACTTCGAGCTCATGGATGATGTTAATTCAAGAAG- 884
|||||||||||||||||||||||||| |||||||||||||||||| | || || |||||
Sbjct 840 AGATCTTCTAGGGATTTAACCAACGATTTCGAGCTCATGGATGATATGAACTCCAGAAGT 899
Query 885 --TGACTTTTTGGGCTCTGTGCATGCGAGAAGCGGTAGCTGTGTTTTGGACGGTTTAGGG 942
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 ACTGATTTTTTGGGCTCTGTGCATGCGAGAAGCGGTAGCTGCGTTTTGGACGGTTTAGGG 959
Query 943 TATGGTGGTGATTCTGATTTAGGGTTTGGAGGTGTCCCCTGTTCTTATTTCGCTAGAGGC 1002
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 960 TATGGTGGTGATTCTGATTTAGGGTTTGGAGGTGTGCCCTGTTCTTACTTCGCTAGAGGC 1019
Query 1003 TTCTGCAAAAACGGAGCTAGCTGCAGATTCGTCCACAGTGATGGAGGAGCTGATTTGGTT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCTGCAAAAACGGAGCTAGCTGCAGATTCGTCCACAGTGATGGAGGAGCTGATTTGGTT 1079
Query 1063 GGCTCTCCAAGCAGAATCGAGCTTCTTAGGTCTAACTCGGTACCTCCAAGACTTGCTCAC 1122
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 GGCTCCCCAAGCAGAATCGAGCTTCTTAGGTCTAACTCGGTACCCCCAAGACTTGCTCAC 1139
Query 1123 CACTTCATGACTCGCTCTTCTCTTCCTTCTTTTTCACCTAAAGCTGTTAACTTGCAGCAA 1182
||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 1140 CACTTCATGACTCGCTCTTCTCTCCCTTCTTTTTCAACTAAAGGTGTTAACTTGCAGCAA 1199
Query 1183 AACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGAGATGAATTGCAGAAGCTTGGA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGAGATGAATTGCAGAAGCTTGGA 1259
Query 1243 AGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGCTTGTCCAGCTTCAAGACAGATC 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGCTTGTCCAGCTTCAAGACAGATC 1319
Query 1303 TATCTGACATTTCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAATTACTTCAGT 1362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATCTGACATTCCCTGCCGACAGTAGGTTCAGGGAGGAAGATGTGTCCAATTACTTCAGT 1379
Query 1363 ACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGGATGTTTGGTTTT 1422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 ACTTTTGGACCAGTTCAAGATGTGAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTT 1439
Query 1423 GTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTTGCCAAAGGGAATCCTCACTTT 1482
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1440 GTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTCTCGCCAAAGGGAATCCTCACTTT 1499
Query 1483 GTGTGTGATTCCAGAGTTCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAA 1542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTGTGTGATTCCAGAGTTCTTGTCAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAA 1559
Query 1543 TACAGAACTAACCAGACAACAGAGCGAGAATTGTCCCCAACAGGCCTTGATTCTAGCCCC 1602
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1560 TACAGAACTAACCAAACAACAGAGCGAGAACTGTCCCCAACAGGCCTTGATTCTAGCCCT 1619
Query 1603 AGGGATGTTCTAGGTGGGAGAGGGTTTTATAACAACACCCAAGATGTGTTGTGGAGGAGT 1662
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1620 AGGGACGTTCTAGGAGGGAGAGGGTTTTATAACAACACTCAAGATGTGTTGTGGAGGAGT 1679
Query 1663 AAGTTTGAAGAAGAGATTCTTGAGCTTCAGAGCAGAAGGCTGATGAATCTGCAGCTTCTT 1722
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1680 AAGTTTGAAGAAGAGATTCTTGAACTTCAGAGCAGAAGGCTGATGAATCTGCAGCTTCTT 1739
Query 1723 GACGTCAAGAAGCATTTCCAACTCAATTCCCCTACCAACATTCACTCTCCGAATCCTTTC 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GACGTCAAGAAGCATTTCCAACTCAATTCCCCTACCAACATTCACTCTCCGAATCCTTTC 1799
Query 1783 AGCCAATCACTTATATCTCC-CGGCCCATTGTCCATGATCAAGAGAGAGTATGAAGGAGG 1841
|||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||
Sbjct 1800 AGCCAATCACTTATATCTCCACG-CCCATTGTCCGTGATCAAGAGAGAGTATGATGGAGG 1858
Query 1842 AGAGAAAGGGAAAGGAAGTTCTAAAGAAGGATCTGATGATGATACAATGAATCTACCAGA 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGAGAAAGGGAAAGGAAGTTCTAAAGAAGGATCTGATGATGATACAATGAATCTACCAGA 1918
Query 1902 GAGGTTGGAGGATAGCTTGCCAGACAGTCCGTTTGCGTCGCCCGCCCATCATTTGCTTCT 1961
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1919 GAGGTTGGAGGATAGCTTGCCAGATAGTCCGTTTGCATCGCCCGCTCATCATTTGCTTCT 1978
Query 1962 GTTTGCTGATTCTGCAGACAATAACGGATCGGATTTGTGGTCGCCTTCTTCTGATAATGA 2021
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1979 GTTTGCTGATTCTGCTGACAATAACGGATCGGATCTGTGGTCGCCTTCTTCTGATAATGA 2038
Query 2022 TGATAATTCTACTCCTTCTACACTCTCTGACTCCTTCAACTCTTTCAACTGCCAAATGCC 2081
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 2039 TGATAATTCTACTCCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCC 2098
Query 2082 GAGGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCTGTCGTGTTGGGAT 2141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 AAGGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCTGTCGTGTTGGGAT 2158
Query 2142 ATAAACAGGAAGAGAACTAAGaaaa-aaa----CTGATAATATAGAGAGACCCTTAATAA 2196
|||||||||||| ||| |||||||| ||| ||||||| |||||||||||||||||||
Sbjct 2159 ATAAACAGGAAGTGAAGTAAGAAAAGAAAAAAACTGATAAAATAGAGAGACCCTTAATAA 2218
Query 2197 CCAAAAAGATGCAGAGGTGTATAAAATAAAAAGCAGGAAATTTGATGTaagagatagaag 2256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2219 CCAAAAAGATGCAGAGGTGTAAAAAATAAAAAGCAGGAAATTTGATGTAAGAGATAGGAG 2278
Query 2257 aagagaaagaaggaagaTTGTTGTACCATTTCTCTAGTTTTAATGTTGTAATGTGATG-- 2314
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2279 AAGAGAAAGAAGGAAGATTGTTGTACCATTTCTCTAGTTTTAATGT-GTTATGTGATGAT 2337
Query 2315 G-ACCACACAAGATGATGTAatatgatatgatat-atata-ata-ta--GGACAAGAAGT 2368
| |||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||
Sbjct 2338 GGACCACACAAGATGATGTAATATGATATGATATGATATATATAATATAGGACAAGAAGT 2397
Query 2369 GTAATCTCTCTAAAGATATACAAAAGAAAAGAGAGATTATCATTTGAGTTTGAAAAGTCA 2428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 GTAATCTCTCTAAAGATATACAAAAGAAAAGAGAGATTATCATTTGAGTTTGAAAAGTCA 2457
Query 2429 ATATGTTCTTGTCCTTGCTAGTTGTTACCCTCTCACTCTAACTAGTAACTACTCTCCAAC 2488
|||||||||||||| |||||||| |||||||||||||||||||| || ||| | |||
Sbjct 2458 ATATGTTCTTGTCCGTGCTAGTTATTACCCTCTCACTCTAACTA----CT-CTC-C-AAC 2510
Query 2489 TTGGGAATCCAGAGATATCAACTTTTGGTG 2518
|||||||||||||||||||| |||||||||
Sbjct 2511 TTGGGAATCCAGAGATATCAGCTTTTGGTG 2540
> AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23426913-23429154 REVERSE LENGTH=1687
Length=1687
Score = 363 bits (196), Expect = 6e-99
Identities = 332/398 (83%), Gaps = 8/398 (2%)
Strand=Plus/Plus
Query 1162 AAAGCTGTTAACTTGCAGCAAAACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGA 1221
|||| ||| |||||||| || | || | |||||| ||||||||||||||||| ||
Sbjct 624 AAAGGTGTCAACTTGCAACAGAGTGAAGCCCAAAGA---GCTGCTGCTTTGATGATGGGC 680
Query 1222 GATGAATTGCAGAAGCTT-GGAAGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGC 1280
||||| ||||| || || |||| |||||| || || ||||| || || || || | |||
Sbjct 681 GATGACTTGCACAA-ATTGGGAATATGGAGGCCAGAGAGGATCGACCTCTCGGCCACGGC 739
Query 1281 TTGTCCAGCTTCAAGACAGATCTATCTGACATTT-CCTGCCGACAGTAGGTTCAGGGAGG 1339
|| || || || ||||||||||||||||| ||| || || ||||||| |||||||| |
Sbjct 740 CTGCCCGGCGTCTAGACAGATCTATCTGAC-TTTCCCGGCTGACAGTATCTTCAGGGAAG 798
Query 1340 AAGATGTGTCCAATTACTTCAGTACTTTTGGACCAGTTCAAGATGTGAGGATACCATATC 1399
||||||| ||| | ||||||||||| ||||| |||||||| || ||||||||||| || |
Sbjct 799 AAGATGTTTCCGACTACTTCAGTACGTTTGGGCCAGTTCAGGACGTGAGGATACCTTACC 858
Query 1400 AGCAAAAGAGGATGTTTGGTTTTGTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTC 1459
|||| |||||||||||||| || ||||| || ||||||| |||||||| ||||||||||
Sbjct 859 AGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGAGACTGTGAAGAGCATTC 918
Query 1460 TTGCCAAAGGGAATCCTCACTTTGTGTGTGATTCCAGAGTTCTTGTTAAGCCTTACAAGG 1519
| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 919 TGGCCAAAGGGAACCCTCACTTTGTGTGTCATTCCAGGGTTCTTGTTAAGCCTTACAAGG 978
Query 1520 AGAAAGGCAAAGTCCCTGACAAATACAGAACTAA-CCA 1556
|||||||||||||||| ||||| ||||| ||||| |||
Sbjct 979 AGAAAGGCAAAGTCCCAGACAAGTACAGGACTAAGCCA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124965855013
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5