BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485555
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51960.2 | Symbols: ATBZIP24, BZIP24 | basic leucine zipper ... 1066 0.0
> AT3G51960.2 | Symbols: ATBZIP24, BZIP24 | basic leucine zipper
24 | chr3:19282601-19284146 REVERSE LENGTH=996
Length=996
Score = 1066 bits (577), Expect = 0.0
Identities = 662/703 (94%), Gaps = 6/703 (1%)
Strand=Plus/Plus
Query 69 GATGGATGAGGAAGAAGGTAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCA 128
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GATGAATGAGGAAGAAGATAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCA 258
Query 129 CAGCTGTAACCCTCCAGGCCCAGAGGATGCTTTTCACTCCCACACATGCTTCCACGCTCA 188
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 TAGCTGTAACCCTCCAGGCCCAGAGGATGCTTCTCACTCCCACACATGCTTCCACGCTCA 318
Query 189 CACTCATCTCATTATC-C-C-TGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAA 245
|||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 319 CACTCATCTCATCATCTCTCAGGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAA 378
Query 246 GAAAAGGTCATGCGGCAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCG 305
|||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GAAACGGTTATGTGGTAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCG 438
Query 306 CACTGCGTACCTTGAAGATGAAGTGAAGAGATTGCAATCTCTGAATGAGCAAATGCTTAG 365
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 439 CACTGCATACCTTGAAGATGAAGTGATGAGATTGCAATCTCTGAATGAGCAATTCCTTAG 498
Query 366 AAAGCTTCAGAGCCAAGAAATGATGGAAACTGAATTGATCAGACTCCGGACTCTTCTGGT 425
||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 499 AAAACTTCAGAGCCAAGAAATGGTGGAAACTGAATTGATCAGACTCCGGGCTCTTCTGGT 558
Query 426 AGAGATGCAGGGGAAAATTGATGTTGAACTTTGTGGCTTCTCCTTTCAGAAGCAATGCAA 485
||||||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||||
Sbjct 559 AGAGATGCAGGGGAAAATTGAAGTTGAACTTTGTAGTTTCTCGTTTCAGAAACAATGCAA 618
Query 486 CGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGC-AGTGTAGCAACAAGTAATATGATGT 544
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 619 CGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGCAACT-TAGCAACAAGTAATATGATGT 677
Query 545 GTGAAGCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCACTCCT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 678 GTGAAGCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCAATCTT 737
Query 605 TTGTTCCTCAATCACCACCATTCTCACATTAAGCTTTTACGGGCTGTGGTATTGTGtata 664
||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 738 TTGTTCCTCAACCACCACCATTCTCACGTTAAGCGTTTACGGGCTGTGGTATTGTGTGTA 797
Query 665 tatatataCATATGGGTTCAATTAAGGGCATAGAGGTTGGATTCCAATATAGTTAACTTA 724
|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 798 TATATATACATATGGGTTTAATTAGGGGCATAGAGGTCGGATTCCAATATAGTTAACATA 857
Query 725 TACACAGATTG-TAACTTATTCCACGTATGTCTATTTTAAGGG 766
||||||||||| |||||||||| || |||||||||||||||||
Sbjct 858 TACACAGATTGGTAACTTATTCTACATATGTCTATTTTAAGGG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5