BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485556
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51970.1 | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol... 1622 0.0
> AT3G51970.1 | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol
acyl transferase 1 | chr3:19284339-19285582 FORWARD LENGTH=1244
Length=1244
Score = 1622 bits (878), Expect = 0.0
Identities = 1085/1185 (92%), Gaps = 13/1185 (1%)
Strand=Plus/Plus
Query 20 TTTGAATTCAAGAAGCAAAAATGGCAAGTTTCATTAAGGCATGGGGTTTAGTGATCATCT 79
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 62 TTTGAGTTCAAGAAGCAAAAATGGCGAGTTTCATCAAGGCATGGGGTTTAGTGATCATCT 121
Query 80 CACTGTGTTACACTTTTTTCATTGCCAAATTGGTTCCAAAAGGAATCAAAAGGCTGATAC 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 CACTGTGTTACACTTTTTTCATTGCCAAATTGGTTCCAAAAGGAATCAAAAGGCTCATAC 181
Query 140 TAATCTTCCCTGTCGTCCTTATTTTCTTCATAGTTCCTTTCTTGATATCTTCCATACATA 199
|| | ||||||||| |||| |||||||||||||| ||||||||||||| |||| |||||
Sbjct 182 TATTTTTCCCTGTCTTCCTCATTTTCTTCATAGTACCTTTCTTGATATATTCCTTACATT 241
Query 200 TACTCGGCATCACGGCTTTCTTCATTGCTTGGCTCGCGAATTTCAAGCTCGTT-CTATTT 258
||||||||||||||||||||||||| |||||||| || |||||||||||| || |||||
Sbjct 242 TACTCGGCATCACGGCTTTCTTCATCGCTTGGCTAGCAAATTTCAAGCTC-TTATTATTT 300
Query 259 GCATTAGGACGCGGTCCTCTCTCTTCAAACCCTAAACCTCTATCTCTCCCTATTTTCTTA 318
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 301 GCATTAGGGCGCGGTCCTCTCTCTTCAAACCATAAACCCCTATCTCTCCCTATTTTCTTA 360
Query 319 GCTGTCTCTTGCTTGCCCATCAAGATTCAGCCGAGGCCTAAACCTCCAAATTCTCACTCC 378
||||||||||||||||||||||||||||||| ||| || |||||| |||| ||||||||
Sbjct 361 GCTGTCTCTTGCTTGCCCATCAAGATTCAGCTGAGCCCAAAACCTACAAAAACTCACTCC 420
Query 379 CATGGAGGAT--TC----GGTCCTTTGATTTATACCATAAAGGCAGTGTTTT-TGGTTCT 431
|||| ||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 421 CATGAAGGATCCACAGAGGGTCCTTTGATTTATACCATAAAGGCAGT-TTTTGTGGTTC- 478
Query 432 TC-TCATCAAAGTCTACGAATACAATAACAAACTGCCCGAGAAAGTCGTGTTGACTCTCT 490
|| ||||||||| ||||||||||| || |||| |||| |||||||||||| |||||||||
Sbjct 479 TCATCATCAAAGCCTACGAATACAGTACCAAATTGCCTGAGAAAGTCGTGCTGACTCTCT 538
Query 491 ACGCGATCCACATATATATCGCACTCGAGCTCATCCTAGCCGCCACGGCTGCTGTGGTTC 550
||||||||||||||||| |||| || ||| ||||||| |||||||| ||||||| |||||
Sbjct 539 ACGCGATCCACATATATTTCGCCCTTGAGATCATCCTTGCCGCCACAGCTGCTGCGGTTC 598
Query 551 GAGCCATGTCGGATCTTGAGCTCGAGCCACAGTTCAACAAGCCGTACCTCGCGACATCAC 610
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 GAGCCATGTCGGATCTTGAGCTCGAGCCACAGTTCAACAAGCCGTACCTAGCGACATCAC 658
Query 611 TTCAAGATTTCTGGGGGAGACGATGGAACCTGATGGTCACCGGAATCTTACGGCCAACCG 670
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 TTCAAGATTTCTGGGGGAGACGATGGAACCTGATGGTCACTGGAATCTTACGGCCAACCG 718
Query 671 TATACGAACCGTTACTTCAACTGTTCTCGGTCTTGGGCCCGAACTTTTCCCAGTTTCCTG 730
| |||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||| ||
Sbjct 719 TGTACGAACCGTCACTTCAACTGTTCTCGGTTTTGGGCCCGAACTATTCCCAGATTCTTG 778
Query 731 CGGCTTTCGGGACGTTCGTTGTTTCTGGGATAATGCACGAGCTTATCTTCTTCTACATGG 790
| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 779 CAGCTTTCGGGACGTTTGTTGTCTCTGGGATAATGCACGAGCTCATCTTCTTCTACATGG 838
Query 791 GACAGTTGAGGCCGGACTGGAAGATGATGTGGTTCTTCCTCATAAATGGATTTTGCACGA 850
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GACGGTTGAGGCCAGACTGGAAGATGATGTGGTTCTTCCTCATAAATGGATTTTGCACGA 898
Query 851 CCGTGGAGATCGCCATCAAGAAAACAATTAACGGAAGGTGGAGAATCCCGAAAGTAATCA 910
||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||
Sbjct 899 CCGTGGAGATCGCCATCAAGAAAACCATTAACGGTAGGTGGAGATTCCCGAAAGCAATCA 958
Query 911 GTCGGGTTTTGACACTCGGGTTTGTGATGGTGACGGCATTGTGGTTGTTCTTGCCAGAAT 970
||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 959 GTCAGGTTTTGACACTCACTTTTGTGATGGTGACGGCATTGTGGCTGTTCTTGCCCGAAT 1018
Query 971 TTAACCGGTGCAACATAATTGAGAGGGCTCTTGATGAATACGCAGCCATAAGCACAGTTG 1030
|||| |||||||||||| |||||| |||||||||||| |||||||||||| || || |||
Sbjct 1019 TTAATCGGTGCAACATAGTTGAGAAGGCTCTTGATGAGTACGCAGCCATAGGCGCATTTG 1078
Query 1031 CAGCCGAGATCAGGAGGAGAGTAACCGCATCTCTTTTATAACCTTACCGTGTGACAAAGC 1090
||| |||| ||||||||| | | ||||||| |||||| ||||| | ||||||||||||||
Sbjct 1079 CAGTCGAGGTCAGGAGGAAACTGACCGCATATCTTTTTTAACCCTGCCGTGTGACAAAGC 1138
Query 1091 TTGAATGAGCTCTATTTTGACTTAtttttttCCAACACTGTAAAACCGGCATTTTTGCAA 1150
|||| ||| ||||||||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 1139 TTGAGTGATCTCTATTTTAACTTATTTTTTTCTAACACTGTAAAACCGACATTTCTGCAA 1198
Query 1151 CCC-ATCATTTACATGGAACACGAATCAAGAAAATTGTGGAAGTT 1194
||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1199 CCCCATCATTTACATGGCACACGAATCAAGAAAATTGTGGAAGTT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5