BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485557
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51980.1 | Symbols: | ARM repeat superfamily protein | chr3... 2248 0.0
> AT3G51980.1 | Symbols: | ARM repeat superfamily protein | chr3:19285572-19287552
REVERSE LENGTH=1438
Length=1438
Score = 2248 bits (1217), Expect = 0.0
Identities = 1372/1445 (95%), Gaps = 18/1445 (1%)
Strand=Plus/Plus
Query 1 AAACCTTAAACCTTTATTTACTGATTAAGTCTACCGCCGGGAAGACAAAGATGCCGACGA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGCTTAAACCTTTATTTACTGATTAAGTCTACCGCCGGGAAGACAAAGATGCCGACGA 60
Query 61 TTTACTTTTTCCGATGTCTGTTACTCTTGGTGGTGATCTCATTGGTGGGTTGTTCGATCA 120
||| ||||||||||| | |||| || ||||||||||||||||||||||||| |||||||
Sbjct 61 TTTTCTTTTTCCGATATGTGTTTCTATTGGTGGTGATCTCATTGGTGGGTTTTTCGATCG 120
Query 121 CTGAGAAAGTTAACTCTTCTGGGGGAATGGTTTGGTCTACTGCGAGAGATGAAGCCGAAT 180
||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||
Sbjct 121 CTGAGAAAGTTAACTCTTCCGGGGGAATGGTCTGGTCTAGTGTTAGAGATGAAGCCGAAT 180
Query 181 TGGTAGAAGATTCCAGTGTGGTAATCGGAGAGCAAGATCAAATCGACGGTGGATTTTCTT 240
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 181 TGGTAGAAGATTCCGGTGTGGTGATCGGAGAGCAAGATCAAATCGATGGTGGATTCTCTT 240
Query 241 CACTTGATGGGATGTTACACTGGGCAATAGGTCACTCGGATCCTGCGACATTGAAGGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACTTGATGGGATGTTACACTGGGCAATAGGTCACTCGGATCCTGCGACATTGAAGGAAG 300
Query 301 CAGCTAAAGATGCAGAGAAGATGTCTTTGGATGAGTTACAGAAGCGTCAATTGGAGTTAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CAGCTAAAGATGCAGAGAAGATGTCTTTGGATGAGTTACAGAAGCGTCAATTAGAGTTAA 360
Query 361 AGGAGCTGGTGGAGAAGCTGAAAATGCCATCAGAC-GCGAAGTTGATGCAAATAGCTATA 419
|||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 361 AGGAGCTGGTGGAGAAGCTGAAAATGCCGTC-GAATGCGAAGTTGATGCAAATAGCGATA 419
Query 420 GATGACTTGAAAAATTCTTCCTTGTCTCTTGAAGATCGTCACCGTGCTTTGCAGGAACTT 479
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGACTTGAATAATTCATCCTTGTCTCTTGAAGATCGTCACCGTGCTTTGCAGGAACTT 479
Query 480 CTGATCCTCGTTGAACCTATTGATAATGCAAATGATTTGAGCAAATCAGGAGGGCTTAGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGATCCTCGTTGAACCTATTGATAATGCAAATGATTTGAGCAAATCAGGAGGGCTTAGA 539
Query 540 GTTGTCGCAGGAGAGCTTAATCATGATGACACAGAAGTAAGGAAACTAGCTGCGTGGGTG 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTGTAGCAGGAGAGCTTAATCATGATGACACAGAAGTAAGGAAACTAGCTGCGTGGGTG 599
Query 600 CTTGGGAAAGCTAGCCAAAACAACCCCTTTGTTCAAGAGCAGGTTCTTGAACTTGGAGCT 659
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 600 CTCGGGAAAGCTAGCCAAAACAATCCTTTTGTTCAAGAGCAGGTTCTTGAACTTGGAGCT 659
Query 660 TTAACAACACTAATAAAGATGGTAAACTCCAGCTCTGCTGAAGAAGCTGTGAAAGCA-TT 718
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 660 TTAACAACACTAATAAAGATGGTAAACTCCAGCTCTACTGAAGAAGCTGTGAAAGCACTT 719
Query 719 CTTTGCTGTTTCTGCCTTGATACGAAATAATATAGCTGGTCAGGACATGTTTTATGCAGC 778
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 720 -TTTGCTGTTTCTGCCTTGATACGAAATAATATAGCTGGTCAGGACTTGTTTTTTGCAGC 778
Query 779 ACATGGATACATTATGCTTAAGGATGTAATGAGCAATGGGAGCTTGGATATAAAATTGAG 838
||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 779 ACATGGATACATTATGCTTCGGGATGTAATGAACAATGGGAGCTTGGATATGAAATTGAG 838
Query 839 ACGGAAAGCTGTATTCTTAGTCGGTGATTTGGCTGAGTCTCAACTACAGAACACAGGGAA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 ACGGAAAGCTGTATTCTTAGTCGGTGATTTGGCTGAGTCTCAACTACAGAACACAGAGAA 898
Query 899 AGATGAACTTCCTATTTTCAAAGATCGtttttttCTCAAGTCTGTTGTCGATTTGATTGT 958
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 899 AGATGAACTTCCTATTTTCAAAGATCGTCTTTTCCTAAAGTCTGTTGTCGATTTGATTGT 958
Query 959 GGTGCTTGATCTTGATCTCCAAGAAAAGGCTCTTACAGCAATCCAAACTCTTCTTCAACT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGTGCTTGATCTTGATCTCCAAGAAAAGGCTCTTACAGCAATCCAAACTCTTCTTCAACT 1018
Query 1019 TAAATCCGTAGAGCCTC-GGATTCTCAAAGAGTTCTGTGGGTTAGAAGAAGCATTGGAGA 1077
||||||| ||||||||| || |||||||||||| ||| ||||| ||||||||||| ||||
Sbjct 1019 TAAATCCATAGAGCCTCAGG-TTCTCAAAGAGTCCTGCGGGTTGGAAGAAGCATTAGAGA 1077
Query 1078 GAATGAAGCTGCAGCTGGAGGAATCAATGGCAGATGAATACAATAGAGACTATGCTGGAG 1137
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 1078 GAATGAAGCTACAGCTGGAGGAATCAATGGCGGATGAATACAAGAGAGACTATGCTGCAG 1137
Query 1138 ATGTGGAGAGCATTCGTGGTGAAGTGGAACTGATCTTCCGCCAAAAGCTTGGACTTTTAT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATGTGGAGAGCATTCGTGGTGAAGTGGAACTGATCTTCCGCCAAAAGCTTGGACTTTTAT 1197
Query 1198 GAAC-C-ATGATCAGTAAGAAAGCAACTCCCTATGCGTTAATTTCTGGTGGGAA--GCTT 1253
|||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1198 GAACACCATGATCAGTAAGAAAGCAACTCCCTGTGCGTTAATTTCTGGTGGGAAAAGCTT 1257
Query 1254 TAGCTGTAGGAGTTGTAGACAAAT-CTTAACTGCCTTAGATAGACTTAAGATGTGTAACT 1312
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1258 TAGCTGTAGGAGTTGTAGACAAATTCT-AACTGCCTTAGATAGACTTAAGATGTGTAACT 1316
Query 1313 TAGGCGGATCTTGAAGATCCATTTTGCTTGGTT-TTGCCTCTACTTGAGCGGGTTTCTTC 1371
||||||||||||| |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct 1317 TAGGCGGATCTTGCTGATCCATTTTGCATG-TTATTGCCTCTACTCGAGCGGGTTTCTTC 1375
Query 1372 GCCTCATCTTTA-TTTCATATCATGTTTGCAAGGTTTTATTATGTATAGTATTATAAACT 1430
||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1376 CCCTCATCTTTACTTTCATATCATGTTTGCAAGGTTTTAT---GTATAGTATTATGAACT 1432
Query 1431 TCCAC 1435
|||||
Sbjct 1433 TCCAC 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5