BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485561
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52050.3 | Symbols: | 5'-3' exonuclease family protein | ch... 2241 0.0
> AT3G52050.3 | Symbols: | 5'-3' exonuclease family protein |
chr3:19304993-19309574 FORWARD LENGTH=1689
Length=1689
Score = 2241 bits (1213), Expect = 0.0
Identities = 1433/1532 (94%), Gaps = 43/1532 (3%)
Strand=Plus/Plus
Query 1 ACCCTTTCTCATTTTTGGAATGTTCTTCCACAAT-C---C-T---TT-C-TTCGGA-T-T 48
|||||||||||||||||||| |||||| || ||| | | | || | |||||| | |
Sbjct 76 ACCCTTTCTCATTTTTGGAAGGTTCTTTCAAAATCCTTTCTTCGATTGCTTTCGGATTCT 135
Query 49 --CTCGATTCTTCGA-TTTTGGTTTTCATTCATGGTGAATGTG-TT--TCCGCTCAGGTT 102
|||| |||||||| |||||||||| |||||||||||||||| || |||||| |||||
Sbjct 136 CGCTCGCTTCTTCGATTTTTGGTTTTGATTCATGGTGAATGTGTTTCCTCCGCTAAGGTT 195
Query 103 AAACGCTCTTCTTCTTCATGACAGTACTTTCAGTGACGTCATGACGCTGCATCTGTATCA 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AAACGCTCTTCTTCTTCATGACAGTACTTTCAGTGACGTCATGACGCTGCATCTGTATCA 255
Query 163 CCACTCTCGTTTTCTATGGAGGAATCTCTGTTTTACTCGGCGAATTGGAAATTTGCGTAA 222
||||| ||||||||||||||||||||||||||| ||||| | ||||||| ||| ||||
Sbjct 256 TCACTCCCGTTTTCTATGGAGGAATCTCTGTTTTCCTCGGAGTGTTGGAAACTTGTGTAA 315
Query 223 TCGGAACTCTTCTCTCATCTCTCCTTCCCTTGCACGCTCCGCGAAGTACTATTGCAGTTC 282
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 316 TCGGAACTGTTCTCTCATCTCTCCTTCCCTTGCACGCTCTGCGAAGTACTATTGCAGTT- 374
Query 283 CACCTGTAATTTGGACGCAGCTGTCTCTGAATTCTCCAATGAAGCAGCTCGTGGCAATAT 342
|| | | |||||| ||||||||||| |||||||||||| |||||| |
Sbjct 375 --CC-G-----T------AGCTGTTTCTGAATTCTCAAATGAAGCAGCTAGTGGCAGCAC 420
Query 343 GTTGACTTCTTATAAAAGTGAAGATGTTGTTGCGCCAGAGACGATAAAATATCCTTTTAA 402
|||||||| ||| ||||||||| |||| ||||| || |||||||||||||||| ||
Sbjct 421 ATTGACTTC-TAT--AAGTGAAGA---TGTTACGCCACAGTCGATAAAATATCCTTTCAA 474
Query 403 GTCAGAAGAAAGAGTAGCAAGTACTGTTGCTTCTTCAAATGGCAGAGTGATGCTTATTGA 462
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 GTCAGAAGAAAGAGTAGCTAGTACTGCTGCTTCTTCAAATGGCAGAGTGATGCTTATTGA 534
Query 463 TGGGACATCTATTATATACAGGGCTTATTATAAGCTTTTAGCAAGGTTGAATCATGGTCA 522
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGGGACATCGATTATATACAGGGCTTATTATAAGCTTTTAGCAAGGTTGAATCATGGTCA 594
Query 523 TCTGGCTCATGCTGATGGAAACGCCGACTGGGTTTTAACAATATTTTCATCTCTTTCTCT 582
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 595 TCTGGCTCATGCTGATGGAAATGCGGACTGGGTTTTAACAATATTTTCATCTCTTTCTCT 654
Query 583 TCTGATTGATGTTTTGAAATTTCTCCCATCCCATGTGGCGGTGGTGTTCGACCATGATGG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCTGATTGATGTTTTGAAATTTCTCCCATCCCATGTGGCGGTGGTGTTCGACCATGATGG 714
Query 643 AGTTCCTTATGGCACTACTTCTAATTCACCTACAGGTTATCGGTCTGCAAAAGGCATGAA 702
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 715 AGTTCCTTATGGCACTACTTCTAATTCATCTACAGGTTATCGTTCTGCAAAAGGCATGAA 774
Query 703 CTTCCGTCATACTCTCTACCCTGCCTATAAAAGTAATCGTCCTCCCACACCTGATACCAT 762
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 775 CTTCCGTCATACTCTCTACCCAGCATATAAAAGTAATCGTCCTCCCACACCTGATACCAT 834
Query 763 AGTACAAGGACTTCAATATCTCAAAGCGTCCATCAAGGCAATGTCTATAAAGGTTATAGA 822
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 835 AGTACAAGGACTTCAATATCTCAAAGCGTCCATCAAGGCAATGTCTATAAAAGTTATAGA 894
Query 823 GGTGCCAGGTGTAGAAGCTGATGATGTTATTGGAACACTGGCTATGCGAAGCATTAGTGC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGTGCCAGGTGTAGAAGCTGATGATGTTATTGGAACACTGGCTATGCGAAGCATTAGTGC 954
Query 883 CGGTTTCAAAGTCCGAGTTGTCTCTCCGGACAAGGACTTCTTTCAGATTCTTTCTCCCTC 942
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 955 CGGTTTCAAAGTCCGAGTTGTCTCTCCAGACAAAGACTTCTTTCAGATTCTTTCTCCCTC 1014
Query 943 GTTGCGTCTTCTTCGACTAACACCACGCGGATCAGAGATGGCTTCTTTTGGAATGGAAGA 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTTGCGTCTTCTTCGACTAACACCACGCGGATCAGAGATGGCTTCTTTTGGAATGGAAGA 1074
Query 1003 TTTTGCTAAAAAGTTCGGAAATTTGGAACCAGCACAATTTGTTGATATAATCGCCCTTGC 1062
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 TTTTGCTAAAAAGTTTGGAAATTTGGAACCAGCACAATTTGTTGATATCATCGCCCTTGC 1134
Query 1063 TGGAGACAAGTCTGATAATATTCCAGGAGTTGATGGCATTGGGAATGTGCACGCAGTGGA 1122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1135 TGGAGACAAGTCTGATAATATTCCAGGAGTTGATGGTATTGGGAATGTGCACGCAGTGGA 1194
Query 1123 ACTGATATCTAGATTTGGCACGTTGGAGAATCTCTTGCAGTCTGTGGATGAGATCAAGGA 1182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1195 ACTGATATCTAGATTTGGCACGTTGGAGAATCTGTTGCAGTCTGTGGATGAGATCAAAGA 1254
Query 1183 AGGAAAAATAAAGGAGTCTCTAATAGCTAGTGCGGATCAAGCCATTCTTAGCAAGAAATT 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGGAAAAATAAAGGAGTCTCTAATAGCTAGTGCGGATCAAGCCATTCTTAGCAAGAAATT 1314
Query 1243 AGCACTGTTACGGTCTGATCTCCCAGATTACATAGTACCGTTTGACACGAAAGATCTCAC 1302
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1315 GGCACTGTTACGGTCTGATCTCCCAGATTACATAGTACCGTTCGACACGAAAGATCTTAC 1374
Query 1303 TTTTAAGAAACCAGAGGACAATGGGGAGAAATTGAGTAGCCTGTTAATCGCTATTGCAGA 1362
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1375 TTTTAAGAAACCAGAGGACAATGGTGAGAAATTGAGTAGCCTGTTAATCGCGATTGCGGA 1434
Query 1363 TTATGCAGAAGGATTTTCAGCTGATCCAGTCATCCGAAGAGCTTACAGGTTGTGGGAAAA 1422
||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1435 TTACGCAGAAGGATTTTCAGCTGATCCAGTCATCAGAAGAGCTTTCAGGTTGTGGGAAAA 1494
Query 1423 ACTGGAAGCAATGCCATGATGATATTTTTTATGCATCTTTTTTCTTACTCTTGTCTCTTT 1482
|||||||||| ||||||||||||||||| |||||||||||||||||||| | | |||||
Sbjct 1495 ACTGGAAGCAGTGCCATGATGATATTTT--ATGCATCTTTTTTCTTACTCGT-T-TCTTT 1550
Query 1483 GTATTGGGTACATAAAATAGAGTAAGCTCAAG 1514
|||||||||||||||||||||||||| |||||
Sbjct 1551 GTATTGGGTACATAAAATAGAGTAAGTTCAAG 1582
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1515 ACTTTCACAATCCTTTTGTAAAGCATGCT 1543
|||||||||||||||||||||||||||||
Sbjct 1622 ACTTTCACAATCCTTTTGTAAAGCATGCT 1650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76154226765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5