BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485566
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52060.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1927 0.0
> AT3G52060.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:19310532-19312286
REVERSE LENGTH=1668
Length=1668
Score = 1927 bits (1043), Expect = 0.0
Identities = 1229/1311 (94%), Gaps = 44/1311 (3%)
Strand=Plus/Plus
Query 1 ATTATTTAAATAGAAAGAGAAGAGCCCCACGTATAACAAATAGCGATAGAGCAACTGTGT 60
||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 20 ATTATATAAATAGAGAGAGAACAGCCCCACGTA-AACAAATAGCGATAGAGCAACTGTGT 78
Query 61 CGATTGTCCCACAT-ATTTT-AAAAT-ATTTCACGTGTCCCCATTTTGCTGACGTCATTA 117
||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 79 CGATTGTCCCAAATAATTTTAAAAATAATTTCACGTGTCCCCATTTTGCTGACGTCATTA 138
Query 118 TTCTCCCTTTTTCCTTTTTATTGTCACATC---A-------TAA-T--TT--TTT--ATC 160
||| |||||||||||||||||||||||||| | ||| | || ||| |||
Sbjct 139 TTC-CCCTTTTTCCTTTTTATTGTCACATCAGAATTTTTTCTAACTCATTCATTTCAATC 197
Query 161 AATCAtcttcttcttcttcttcttcttcctctgagaaattctgtgttgttgt-ttc--ag 217
|||| |||||||||||||||||||||||||| |||||||||||||||||||| | | ||
Sbjct 198 AATCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGAGAAATTCTGTGTTGTTGTATACAGAG 257
Query 218 agatgttctcttcttctacactcgtttattctctatctctcttcctctctctttctc-t- 275
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 AGATGTTCTCATCTTCTACACTCGTTTATTCTCTATCTCTCTTCCTCTCTCTTTCTCTTC 317
Query 276 tc-tc-t--tc-t--tcctctcaccacacatccttctctcttcctctAACCTCATTTCCA 328
|| || | || | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 318 TCTTCTTCCTCTTCATCCTCTCACCACACATCCTTCTCTCTTCCTCTACCCTCATTTCCA 377
Query 329 CCGCCGATGACCTAGACGACCTCTCTCTCTTCCACCGCGCCGCCGTCTCTTCCTCCA-C- 386
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 378 CCGCCGATGACCTAGACGACCTCTCTCTCTTCCACCGCGCCGTCGTCTCTTCCTCCACCA 437
Query 387 -CAACAACCGCCGTCTCATCTCCCTCTCTCCAAATCCTCCCCCTAAGATCGCTTTCCTCT 445
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 438 ACAACAACCGTCGTCTCATCTCCCTCTCTCCAAATCCACCCCCAAAGATCGCTTTCCTCT 497
Query 446 TCCTAACAAACTCCGATCTAACCTTCTTACCTCTCTGGGAAAGCTTCTTCCAAGGTCACC 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCCTAACAAACTCCGATCTAACCTTCTTACCTCTCTGGGAAAGCTTCTTCCAAGGTCACC 557
Query 506 AAGATCTCTACAATGTTTACATCCACGCAGATCCAACCTCCTCCGTATCTCCGCTTCTCG 565
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 558 AAGATCTCTACAACGTTTACATCCACGCAGATCCAACCTCCTCCGTCTCTCCTCTTCTCG 617
Query 566 ATTCATCGTCAATCAACGCTAAATTCATCCCGGCGAAAAGAACCGCACGAGCTTCTCCGA 625
|||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 618 ATTCTTCATCAATCAACGCTAAGTTCATCCCGGCGAGAAGAACCGCACGAGCTTCTCCGA 677
Query 626 CGCTAATCTCCGCCGAGCGACGATTACTAGCAAACGCAATCCTCGACGATCCTAACAATC 685
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CGTTAATCTCCGCCGAACGACGATTACTAGCAAACGCAATCCTCGACGATCCTAACAATC 737
Query 686 TCTATTTCGCTTTAATCTCACAACACTGCATCCCTCTCCATTCCTTCTCTTACATCCACA 745
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 738 TCTATTTCGCTTTAATCTCACAACACTGTATCCCTCTCCATTCCTTCTCTTACATCCACA 797
Query 746 ACCACCTCTTCTCCACCAACTCCGATCATCACCAAAGCTTCATCGAGATCCTCTCCGATG 805
|||||||||||||| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 798 ACCACCTCTTCTCCG--A--TC--ATCATCAACAAAGCTTCATCGAGATCCTCTCCGATG 851
Query 806 AACCTTTTCTTCCGAAACGATACAACGCAAGAGGCGACGACGCGATGCTTCCTGAGATCC 865
|||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 852 AACCGTTCCTTCTGAAACGATACAACGCAAGAGGAGACGACGCGATGCTTCCTGAGATCC 911
Query 866 GGTACCAAGACTTCCGTGTTGGATCTCAGTTCTTCGTTTTAGCGAAACGTCATGCTCTAA 925
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 912 AGTACCAAGACTTCCGTGTTGGATCTCAGTTCTTCGTATTAGCGAAACGTCATGCTCTAA 971
Query 926 TGGTGATCAAAGAGAGAAAACTATGGAGGAAATTCAAATTACCATGCCTTGATGTTGAAT 985
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TGGTGATCAAAGAGAGAAAGCTATGGAGGAAATTCAAATTACCATGCCTTGATGTTGAAT 1031
Query 986 CTTGTTACCCTGAAGAACATTATTTTCCGACTTTGTTGTCTCTTGAGGATCCTAAAGGAT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1032 CTTGTTACCCTGAAGAACATTATTTTCCGACTTTGTTGTCTCTTGAGGATCCTCAAGGAT 1091
Query 1046 GTAGTCACTTCACACTCACACGTGTTAATTGGACCGGTAGTGTTGGTGGTCATCCTCACA 1105
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GTAGTCACTTTACACTCACACGTGTTAATTGGACCGGTAGTGTTGGTGGTCATCCTCACA 1151
Query 1106 CGTACGATGCCTCTGAGGTCTCGCCGCAGCTGATTCACTCGCTGCGGAGATCTAATTCGA 1165
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1152 CGTACGATGCCTCTGAGATCTCGCCGCAGCTGATTCACTCTCTGCGGAGATCTAATTCGA 1211
Query 1166 GTTTAGACTATTTCTTCGCCCGAAAATTCACGCCGGAGTCATTGCAACCTCTTATGGAGA 1225
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1212 GTTTAGACTATTTCTTCGCCAGAAAATTCACGCCGGAGTCATTGCAACCGCTTATGGAGA 1271
Query 1226 TTGCAGATGCTGTGATCTTTAGGGATTGAAT-CGGTGAAAGTAAATTAGGT 1275
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1272 TTGCAGATGCTGTGATCTTTAGGGATTGAATTCGGTGAAAGTAAATTAGGT 1322
Score = 431 bits (233), Expect = 1e-119
Identities = 319/357 (89%), Gaps = 19/357 (5%)
Strand=Plus/Plus
Query 1350 AGGTTTCAGGTATCATCATCATCAA-GAAGGTTTAGGAACAAGTTTGTATTGGCGCTCGA 1408
|||||||| | || |||||||| || ||||||||||||| ||| |||| |||||||||||
Sbjct 1319 AGGTTTCA-G-AT-ATCATCAT-AAGGAAGGTTTAGGAAGAAGCTTGTGTTGGCGCTCGA 1374
Query 1409 AGAAGAGTGGC-AAATAAAAGATGAAAC-TCtgtgtgtgtgtgtgAAAATTGCTGTGTCT 1466
||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1375 AGAAGAGTGGCTAAAT-AAAGATG-AACTTCTGTGTGTGTGTGTGAAAATTGCTGTGTTT 1432
Query 1467 TTTAAGCTTTTGTGTGTCATTTAGGGAAGGT-TAG--AT-GGAAGTTGGATGTaaaaaaa 1522
|||||||||||||||||| | |||||||||| || || |||| |||||||||||||
Sbjct 1433 TTTAAGCTTTTGTGTGTC-TCTAGGGAAGGTAGAGATATGGGAAAATGGATGTAAAAAAG 1491
Query 1523 aaTGTAAATAGAGAGAGCCCCAAAGGCAAAGTGAGAGCATCATCATTAAGATAA-GCCAA 1581
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1492 AATGTAAATAGAGAG-CCCCCAAAGGCAAAGTGAGAGCATCATCATTAAGATAAAGCCAA 1550
Query 1582 ATAGGCTTT-CTTTTGTATTTCAGCTCCTTTCCACGGGAGAGAGAGGGAATTGCAAAGG- 1639
|| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1551 ATCGGCTTTTCTTTTGTAATTCAGCTCCTTTCCACGGGAGAGAGAGGGAATGGCAAAAGT 1610
Query 1640 GTTATTCCCTCTCTTTTGTTTCGATTAA-GTGTGAATGAAAAAATCTTTGGTATTTC 1695
||| |||||||||||||||||||| || ||||||||||||| ||||||| ||||||
Sbjct 1611 GTTGTTCCCTCTCTTTTGTTTCGAAAAAAGTGTGAATGAAAAGATCTTTGTTATTTC 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5