BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485568
Length=2559
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52080.1 | Symbols: chx28 | cation/hydrogen exchanger 28 | c... 3943 0.0
> AT3G52080.1 | Symbols: chx28 | cation/hydrogen exchanger 28 |
chr3:19315043-19317843 FORWARD LENGTH=2561
Length=2561
Score = 3943 bits (2135), Expect = 0.0
Identities = 2422/2563 (94%), Gaps = 9/2563 (0%)
Strand=Plus/Plus
Query 1 ACAATAAGCCCTTCGAACGAATAAGGCAACTACAGGGAGAGAAAA-ATGAATACAACTAC 59
|||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 4 ACAATAAGCCCTAAGAACGAATAAGGCAACTACA--GAGAGAAAAGATGAATTCAACTAC 61
Query 60 AACAAAAAACGTTTGTGGAGACAAATGGTACCTTAACCTAGACAAGCCTGAAGAGGCATT 119
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 62 AACAAAAAACGTTTGTGGAGACAAATGGTACCTTAACCTAGACAGGCCAGAAGAGGCATT 121
Query 120 GAAGATTCTTGGATTCATTGCCATTTTCGTCATCCGAACTCTCCTCCATCATCTCATGAA 179
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 122 GAAGATTCTTGTATTCATTGCCATTTTCGTCGTCCGAACTCTCCTCCATTATCTCATGAA 181
Query 180 GCCTCTAGGCCTACCTTACCTCACCACCGACTTTGCTATAGGGCTAATTCTAGGTAACCT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 182 GCCTCTAGGCCAACCTTACCTCACCACCGACTTTGCTATAGGGCTAATTCTAGGTAATAT 241
Query 240 TCCCAA-GTTTCGAGAGGCATTCTCGGGGCCTTACTCTATAACCCTCAACAACATAATCG 298
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 T-CCAAGGTTTCGAGGGGCATTCTCGGGGCCTTACTCTATAACCCTCAACAACATAATAG 300
Query 299 AATTCGGTATGATCTGCCATATGTTTGTGATGGGTCTAGAGATGAATCCAAGCGTCCTTC 358
|||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 301 AATTTGGAATGATCTGCCATATGTTTGTCATGGGTCTAGAGATGAATCCAAGCGTTCTTC 360
Query 359 TCAGACCACCAACCAAAGACGCATTCATAGCATACACAAGCATGATTACGACCTTTGTTC 418
||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct 361 TCAGACCACCAACCAAAGATGCATTCATTGCCTACACAAGCATGATCACGACCTTTGTTC 420
Query 419 TCGCCTTTGTCACAACTCCTTTCCTCCACTATACCAAAACCGCTCCTTACATTTTCTCCC 478
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TCGCCTTTGTCACAACTCCTTTCCTCCACTATACCAAAACTTCTCCTTACATTTTCTCCC 480
Query 479 TCGCCCTCTCCCTCATGGCCTCAAGCACCGGTTCCCCCATCCTAACCCGCGTCATCGCCA 538
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 481 TCGCCCTCTCCCTCATGGCCTCAAGCACCGGTTCTCCTATCCTAACCCGCGTCATCGCCA 540
Query 539 ATCTCAAGATCAGAAAATCCGATCTTGGAAAACTTGCATCAGCCGCAGGTGTTCATACGG 598
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 ATCTCAAAATCAGAAAATCCGATCTTGGAAAACTTGCATCAGCCGCAGGTGTCCATACGG 600
Query 599 ATATGATCTCTACCTTGTTTTACTGCTTCGGCTTCATTTTCTTTCCTACAGAGAAACCTC 658
| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 601 ACATGATCTCTACCTTGCTTTACTGCTTCGGCTTCATTTTCTTCCCTACGGAGAAACCTC 660
Query 659 TCGCTCGTCCTCTTCACAGATTCTTCAGAGCCCTCCTCATGTTTTGCCTCTTCCTCGCTC 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCGCTCGTCCTCTCCACAGATTCTTCAGAGCCCTCCTCATGTTTTGCCTCTTCCTCGCTC 720
Query 719 AGGTCACTTTCACTTCCATCGTATCCCCAATCTTTCTTAATTGGGTCAACAACGAGAACC 778
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGTCACTTTCACTTCCATTGTATCCCCAATCTTTCTTAATTGGGTCAACAACGAGAACC 780
Query 779 CTGAAGGCAAGCCACTCAAGGGATCTCACCTCGTTATGTCACTCGCATTTGTTGTCTTGA 838
||||||| || ||||||||||| || ||||| |||||||| || |||||||| |||||||
Sbjct 781 CTGAAGGTAAACCACTCAAGGGGTCACACCTTGTTATGTCCCTGGCATTTGTCGTCTTGA 840
Query 839 TCTGTAGTTTTCCAACCTGGCCACCTGAATCAATGTACAACCCAATTCTCAGCGCCTTCA 898
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 841 TCTGCAGTTTCCCAACTTGGCCACCTGAATCAATGTACAACCCAATTCTCAGTGCATTCA 900
Query 899 CGGCTGGTCTTTTCCTTCCAAACAAAGGAAGAATGTCCAAATGGATCATCAACAAAATTA 958
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 901 CGGCTGGTCTCTTCCTTCCAAACAAAGGAAGAATGTCGAAATGGATCATCAACAAAATCA 960
Query 959 ATTACTTGCTCAGCACGGTCTTCTACCCTATCTTCTTCTTCTGGGTTGGATTTATAATCC 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 ATTACTTGCTCAGCACGGTCTTCTACCCTATCTTCTTCTTCTGGGTTGGATTCATAATCC 1020
Query 1019 ACATGAGAAACTTTGACATCACTGACAAAATGGCGTGGGCAAGGTTCTTTGCTCTTCTCG 1078
||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||| |
Sbjct 1021 ACATGAGAAACTTTGACATTACTGACAAAATGGCGTGGGTAAGATTCTTTTCTCTTCTTG 1080
Query 1079 GCACTGTCATAGTCGGAAAAGTCACCGGAACAGTCCTGTGTGGTTTACTACTCGGTTATC 1138
||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 GCACTGTTATAGCCGGAAAAGTCACCGGAACAGTCTTGTGTGGTTTACTACTCGGTTATC 1140
Query 1139 ATGTCCCGGAAACCGCATCCTTAGGACTGCTTTTGACCGCTAAAGGCCATTTTCATGTAT 1198
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1141 ATGTCCCGGAAACCGCATCCTTAGGACTGCTTTTGACCACTAAAGGCCATTTTCATGTCT 1200
Query 1199 ACTTGGCAGCCTTAGCCATTCGGACAAACAGGGTGAAAAATACAACCGGTGCAATGATCA 1258
|||||||||| |||||||||||||| ||||||||||||| ||| ||||||||| ||||||
Sbjct 1201 ACTTGGCAGCTTTAGCCATTCGGACTAACAGGGTGAAAAGTACGACCGGTGCATTGATCA 1260
Query 1259 TTTTTGTTATTGTTC-TAACGGTTGTCTACTCCCCTTTCGTGGTCATGGACATCATCAAA 1317
| ||| | |||| || | ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1261 TATTTATCATTG-TCTTCACGGTGGTCTACTCCCCATTCGTGGTCATGGACATCATCAAA 1319
Query 1318 CGCGCTAGAAAGCGAGTGCCAGTGCACATCATGGCACTTCAGTGGCTCGATCCAACAACT 1377
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1320 CGCGCTAGAAAGCGGGTGCCTGTGCACATCATGGCGCTTCAATGGCTCGATCCAACAACT 1379
Query 1378 GAACTTCGTATCTTGATCGGTCTCCACGGTCCCCACAACATCGGTTCCACGCTCAACCTT 1437
|||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1380 GAACTTCGGATCTTGATTGGTCTCCACGGTCCCCACAACATTGGTTCTACGCTCAACGTT 1439
Query 1438 ATGGAGATCTGCCATGGTGGACGTGAGCCAGGATCCATATTCTATGCGACTGACATGGTG 1497
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1440 ATGGAGATCTGCCATGGTGGCCGTGAGCCGGGTTCCATATTCTATGCGACTGACATGGTG 1499
Query 1498 GAGTTGACTGATGAGATTGCAGCCACACTGAAAAAGGGCGGAGGAGCGGGTCAGAGTAAT 1557
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 1500 GAGTTGACTGATGAGATTGCAGCCACGCTGAAGAAGGGCGGAGGAGCCGGTCAGAGTAAT 1559
Query 1558 GATTCAGTGACGATAACGGATAGGTCAGTGACGGAAATGAGAGAGAGTATTACGGCAGCT 1617
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1560 GATTCAGTGACGGTAACGGATAGGTCGGTGACGGAAATGAGAGAGAGTATAACGGCAGCT 1619
Query 1618 GTGAATGGGTATGGAGAGCTCCGTAACGGCCAAGGTGTGACAGTGAGGCGGATGTTGGCT 1677
||||||||||| ||||||||||| || || ||||||||||||||| |||||||| ||||
Sbjct 1620 GTGAATGGGTACGGAGAGCTCCGCAATGGACAAGGTGTGACAGTGCGGCGGATGCTGGCG 1679
Query 1678 TTGTCCACGTTTGTGACCATGGCGCAAGACATCTGTGGTTTGGCTGATGAACTTATGGTT 1737
||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct 1680 TTGTCCACGTTTGTGACCATGGCCCATGACGTCTGCGGTTTGGCTGATGAACTTATGGTT 1739
Query 1738 TCCATTATAATTCTACCATTCCATAAACGGCTGAATCCTGATGGCACTCTTGATTCTGGC 1797
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 1740 TCCATTATAATTCTACCGTTCCATAAACGGCTGAATCCTGATGGTACTCTCGATGCTGGT 1799
Query 1798 CATGCCGGGTTCCGTCATGTGAACCGCAAGATTCTGAAGAACGCACCATGTTCGGTGGGA 1857
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1800 CATGCTGGGTTCCGTCATGTGAACCGCAAGATTCTGAAGAACGCACCATGTTCAGTAGGA 1859
Query 1858 ATTCTTGTGGATAGGTCCTTCGGGCAAACAGAAGAGGCGTGGAGACCAGGAGCGTCCATG 1917
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1860 ATTCTTGTGGATAGGTCGTTCGGGCAAACAGAAGAGGCATGGAGACCAGGAGCGTCCATG 1919
Query 1918 GACATTGCTATAATATTCATAGGTGGCAGAGACGACCGAGAGGCACTAGCTTTCGCAGCA 1977
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1920 GGCATTGCTATAATATTCATAGGTGGCAGAGACGACCGAGAGGCACTAGCCTTCGCTGCA 1979
Query 1978 CAAGTGGCTCGACATCCTGCTGTGAAATTAAAGGTTATACGTTTCTTGGAAGACAAGAGC 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 CAAGTGGCTCGACATCCTGCTGTGAAATTAAAGGTTATACGTTTCTTGGAAGACAAGAGC 2039
Query 2038 TCGCAGAACGCACAAAAACGAAGCAGTATCCTGAACAGAGCGAGTGTGGTAGAGCAAGAG 2097
|| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2040 TCTCAAAACGCACAAAAACGAAGCAGCATCCTGAACAGAGCGAGTGTGGTAGATCAAGAG 2099
Query 2098 GAGGAAATGAAGCTTGATGATGAATGTTTTGCTGAGTTTTATGAAAGATACATAGCTGGA 2157
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2100 GAGGAAATGAAGCTTGATGATGAATGTTTTGCTGAGTTCTACGAAAGATACATAGCTGGA 2159
Query 2158 GGTGGAAGAGTGTCTTACATGGAGAAGCATCTCACCAACTCCTCTGAGACTTTCACAGCA 2217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 GGTGGAAGAGTGTCTTACATGGAGAAGCATCTCACCAACTCCTCTGAGACTTTCACAGCT 2219
Query 2218 CTTAAATCACTAGATGGAGAGTATGGGCTGGTGATTGTAGGAAGAGGAGGGGGAAGAGCG 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 CTTAAATCACTAGATGGAGAGTATGGGCTGGTGATTGTAGGAAGAGGAGGGGGAAGAGCG 2279
Query 2278 AGCAGTGGGTTAACCACTGGCCTCAACGACTGGCAGCAATGTCCAGAGCTTGGTCCCATA 2337
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 AGCAGTGGGTTAACCACCGGCCTCAACGACTGGCAGCAATGTCCAGAGCTTGGTCCCATA 2339
Query 2338 GGTGACGTTCTTTCTGGATCAGATTTCTCACACAACACATCGATGTTAATCATTCAGCAG 2397
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2340 GGTGACGTTCTTTCAGGATCAGATTTCTCACACAACACATCAATGTTAATTATTCAGCAG 2399
Query 2398 CAGCGCACTCGGGGTCAGCTAGAAGGGCTTCATGATGATTTCACCATCCTGTGAATATCT 2457
||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 2400 CAGCGTACTCGGGGTCAGCTAGAAGGGCTTCATGATGACTTCACTATACTGTGAATATCT 2459
Query 2458 GTACAAATGCACTT-ACTTAGTAGCTTGGGAAGAGTAGTAGCTTCACCATCGCAGCTCTT 2516
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2460 GTACAAATGCACTTTACTTAGTAGCTTGGGAAGAGTAGTAGCTTCACCATCACAACTCTT 2519
Query 2517 AAAAGAGAATTTGTACAATAGTTCAAACATTAAGTGGTTTATG 2559
||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 2520 AAA-GAGACTTTGTACAATAGTTCAAACATTAAGCGGTTTATG 2561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127022699676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5