BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485571
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52110.1 | Symbols: | unknown protein; Has 191 Blast hits t... 2039 0.0
AT3G52105.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 104 2e-21
> AT3G52110.1 | Symbols: | unknown protein; Has 191 Blast hits
to 174 proteins in 54 species: Archae - 0; Bacteria - 7; Metazoa
- 45; Fungi - 7; Plants - 40; Viruses - 0; Other Eukaryotes
- 92 (source: NCBI BLink). | chr3:19323772-19325668 REVERSE
LENGTH=1278
Length=1278
Score = 2039 bits (1104), Expect = 0.0
Identities = 1222/1278 (96%), Gaps = 11/1278 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctGTGTATTCTTCTCTAATGGAGCCTGCTCATATCGATTGGAAGAGAAT 60
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 9 TCTCTGTATCTCTGTGTATTCTTCTCTCATGGAGCCTGCTCATATCGATTGGAAGAGAAT 68
Query 61 CGATTCTCGTTTTGTTGAAGACGTTTTCTACGAACACATCAGAGCTCCTAAATGGTTCGA 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 69 CGATTCTCGTTTTGTTGAAGACGTTTTTTACGAACACATCAGAGCTCCTAAATGGTTCGA 128
Query 121 TTTCTTGGCCCCTACCCAATTTGACTCCATTGACGACGATGCTTGGTTCTGCAAACCTGA 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TTTCTTGGCCCCTACCCATTTTGACTCCATTGACGACGATGCTTGGTTCTGCAAACCTGA 188
Query 181 ATGTAATCATCCCAAGAGACCTGAGGACTTCTTCTCAACGCCAACTTCTTCCAAGCATCC 240
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 189 ATGTAATCATCCCAAGAGACCTGAGGACTTTTTCTCAACGCCGACTTCTTCCAAGCATCC 248
Query 241 AAGTCTGAGGGATACGAATGAGACTCTAACAGAACAGAATCAGAGGAGGAGGGGATATGC 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 249 AAGTCTGAGGGATACGAATGAGACTCTAACAGAGCAGAATCAGAGGAGGAGGGGATATGC 308
Query 301 TTTATCACCTTCTACTCCAAACAACCAAGAAAGTGAAAACCAGAATCCAAACTTAGCCAC 360
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 309 TTTATCACCTTCTACTCCAAACAACCAAGAAAGTGAAAATCAGAACCCGAACTTAGCCAC 368
Query 361 ACCTCCAAGCTACCAAGCAAAATCCTGGAGAGCAGCAATTAAATCAACTTCTGTCAAGAA 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 369 ACCTCCAAGCTACCAAGCAAAATCATGGAGAGCAGCAATTAAATCAACTTCTGTCAAGAA 428
Query 421 GATGAATAAAGAAGCACCAAGACTAAAGAGCACACAATCAGCTAGAAATCTGTTTTCCGG 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 429 GATGAATAAAGAAGTTCCAAGACTAAAGAGCACACAATCAGCTAGAAATCTGTTTTCAGG 488
Query 481 GAGAGACATATTTGGTCATATCTCAGATTTCTGCTATGAGTTGAAGAGATTAGCCACAAG 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 489 GAGAGACATATTTGGTCATATCTCAGATTTCTGCTATGAATTGAAGAGATTAGCCACAAG 548
Query 541 GGTGACTGAGAGAGAAGATACTGGGAAGTCTGAAGTGAAGGAGAGTCATCAAGTGGGTGG 600
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 549 GGTTACTGAGAGAGAAGATACTGGGAAATCTGAAGTGAAGGAGAGTCATCAAGTGGGTGA 608
Query 601 ATTAATAAATCAGCCTTACTCTGTTCATGACTTGGAATTGAAAAAGGAAAGAAAGCCATT 660
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 609 AATAGTAAATCAGCCTTACTCTGTTCATGACTTGGAATTGAAAAAGGAAAGAAAGCCACT 668
Query 661 GCTTGAAGTAAGCAAAGATAAGCTCCCTGAGTCCACGGATGTTAAAGGAAGTACCTTCAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 669 GCTTGAAGTAAGCAAAGATAAGCTCCCTGAGTCCACGGATGTTAAAGGAAGCACATTTAA 728
Query 721 AGAGAACCGTAGAAGAAAGAAGAGAGTGGATGATGCAGAGAACATTCCTGTCTCTGTTAA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 729 AGAGAACCGTAGAAGAAAGAAGAGAGTGGATGATGCAGAGAACATTCCTGTCTCACTTAA 788
Query 781 TGTGGAGACTGTAAAGAACAAAGGAGAGGAGGGTAGAAGAAAGAAGAGAATGGATGATGC 840
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TGTGGAGACTGTAAAAAACAAAGGAGAGGAGGGTAGAAGAAAGAAGAGAATGGATGATGC 848
Query 841 AGAGAACATCCCTGTTCCTCTAAAACTGGAGACTGTAAAGAACAAAGGACACGAACGATT 900
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 849 AGAGAACATCCCAGTTCCTCTAAAACTGGAGACTATAAAGAACAAAGGACACGAACGATT 908
Query 901 CCTGCAGCAAATCAGGACAAATCCACCATCTCCTCAATGCTTCTCAGAGAACAGGACAGC 960
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 909 CCTGCAGCAAATCAGGACAAACCCACCATCTCCTCAATGCTTCTCTGAGAACCGGACAGC 968
Query 961 TACATTGAAACCCTTGAGGACCAAACCTACGGAAGTATTgaagagaaaggaagatgaagc 1020
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 969 TACATTGAAACCCTTGAGGACCAAACCTACGGAAGTGTTGAAGAGAAAGGAAGATGAAGC 1028
Query 1021 agaagaagagaagatcaggaagagtggagaaggcaaagaaggaa---ggGGCTTGGACGT 1077
|||||||| |||| ||| |||||||||||| ||||||||| || |||| ||||||||
Sbjct 1029 TGAAGAAGAAAAGAACAGAAAGAGTGGAGAAAGCAAAGAAGCAACAAGGGGATTGGACGT 1088
Query 1078 TCTCTGGTTCTTAAAGCCTTGCACTTTAGCCAACTAAAAGAAGCTCTAAATTTCACCAAA 1137
|||||||||||||||||||||||||||||||||||| || || | || | |||||||
Sbjct 1089 TCTCTGGTTCTTAAAGCCTTGCACTTTAGCCAACTAGAA-AA-C-CT---T--CACCAAA 1140
Query 1138 TTCTTTCTATATTGATTCATTCTTTTGTTAATTTCATTTTATTCAACTCTAACTAACGAG 1197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 TTCTTTCTATATTGATTCATTCTTTTGTTAATTTCATTTTATTCAACTGTAACTAACGAG 1200
Query 1198 ATGATGATCTTGCTCAGAGATATAATTCTGGGCAAATTTGATTCAATCTCTTACTTTTAC 1257
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATGATTATCTTGCTCAGATATATAATTCTGGGCAAATTTGATTCAATCTCTTACTTTTAC 1260
Query 1258 ACATACAACGATTTGTTT 1275
||||||||||||||||||
Sbjct 1261 ACATACAACGATTTGTTT 1278
> AT3G52105.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:19323332-19323827
FORWARD LENGTH=496
Length=496
Score = 104 bits (56), Expect = 2e-21
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 1220 TAATTCTGGGCAAATTTGATTCAATCTCTTACTTTTACACATACAACGATTTGTTT 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TAATTCTGGGCAAATTTGATTCAATCTCTTACTTTTACACATACAACGATTTGTTT 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5