BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485579
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52160.1 | Symbols: KCS15 | 3-ketoacyl-CoA synthase 15 | chr... 2113 0.0
> AT3G52160.1 | Symbols: KCS15 | 3-ketoacyl-CoA synthase 15 | chr3:19344972-19346615
REVERSE LENGTH=1477
Length=1477
Score = 2113 bits (1144), Expect = 0.0
Identities = 1308/1387 (94%), Gaps = 11/1387 (1%)
Strand=Plus/Plus
Query 1 ACAAGGGTTTGATGCCTACTGAAAATGGAAAAAGAGGCAACAAAGATGATGAATGGTGGA 60
|||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ACAAGGTTTTGATGCTTAGTGAAAATGGAAAAAGAGGCAACAAAGATGGTGAATGGTGGA 60
Query 61 GTTAAGTCAAAGTCACCCAAGGGCAGTCCTGATTTCCTCGGATATGTGAATATGAGATAC 120
||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||
Sbjct 61 GTTAAGTCAAAGTCACCTAAGGGCAGTCCTGATTTCCTCGGATA--T-AATTTGAGATAT 117
Query 121 GTCAAGCTTGGATACATTTAccttctctctctctcccgtaccttttctttcttcattcct 180
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 118 GTCAAGCTTGGATACATTTACCTTCTCTCTCTCTCACGTACCTTTTGTTTCTTCCTTCCT 177
Query 181 cctcttctccttctctttatctttGTATATCGGTTTCTCCCAATCTTGGCTTTTCCTTTA 240
|||||||| |||||||| |||||||| | ||| |||||||||||||||||||| |||||
Sbjct 178 CCTCTTCTTCTTCTCTTCATCTTTGTTTCTCGATTTCTCCCAATCTTGGCTTTCCCTTTG 237
Query 241 TAC-Atcttctttc-tcctcctcatctatcattttcttactccttcctctgtttttcttc 298
| | | |||| ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 T-CTACCTTC-TTCATCCTCCTCATCTATCATTATCTTACTCCTTCCTCTGTTTTTCTTC 295
Query 299 tcgatttctcCTGTTACCGCCCACCCGATCATCTCAAGATTACGAAAAGCGACTTCATCG 358
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 296 TCGATTTCTCCTGTTACCGCCCACCCGATCATCTCAAGATCACAAAAAGCGACTTCATCG 355
Query 359 AGCTGGCAATGAAGTCTGGTAACTTCAACGAGACTGCCATCGAGCTTCAAAGAAAAGTGC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGCTGGCAATGAAGTCTGGTAACTTCAACGAGACTGCCATCGAGCTTCAAAGAAAAGTGC 415
Query 419 TGGACCAATCAGGGATAGGAGAGGAGAGTTACATGCCAAGAGTGGTGTTCAAGCCTGGTC 478
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 416 TGGACCAATCAGGGATAGGAGAGGAGAGCTACATGCCGAGAGTGGTCTTCAAGCCTGGTC 475
Query 479 ACAGGGTCAATCTTCGTGATGGTCGTGAAGAAGCAGCAATGGTGATCTTTGGAGCAATTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACAGGGTCAATCTTCGTGATGGTCGTGAAGAAGCAGCAATGGTGATCTTTGGAGCAATTG 535
Query 539 ATGAACTTCTTGCAGCAACCAAAATCAACGTGAAGCATATCAAGATCCTGGTGCTAAACT 598
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 ATGAACTTCTTGCAGCGACCAAAATCAATGTGAAGCATATCAAGATCCTGGTGCTAAACT 595
Query 599 GCGGAGTCCTCAACACCACGCCTTCTCTATCGGCCATGGTGATTAACCATTACAAGCTCA 658
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 596 GCGGAGTCCTCAACACCACGCCATCTCTATCGGCCATGGTGATTAACCATTATAAGCTGA 655
Query 659 GGCATAACACAGAGAGCTACAATCTTGGTGGTATGGGATGTGGCGCTGGAATCATAGCCA 718
||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||
Sbjct 656 GGCATAACACAGAGAGCTACAATCTTGGTGGTATGGGGTGTAGCGCCGGAGTCATAGCCA 715
Query 719 TTGATTTAGCCAAAGATCTTTTGAACGCTCATCAAGGCTCTTATGCTTTGGTGGTGAGCA 778
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 716 TTGATTTAGCCAAAGATCTTTTAAACGCTCATCAAGGCTCTTACGCTTTGGTGGTGAGCA 775
Query 779 CTGAGATAGTAAGCTTCACTTGGTACTCAGGTAATGACGTCGCGTTGCTTCCACCAAATT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTGAGATAGTAAGCTTCACTTGGTACTCAGGTAATGACGTCGCGTTGCTTCCACCAAATT 835
Query 839 GCTTCTTTCGAATGGGAGCAGCTGCAGTTATGTTATCTAGTCGGCGTATCGACAGATGGC 898
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 836 GCTTCTTTCGAATGGGAGCAGCTGCAGTTATGCTATCTAGTCGGCGTATCGACAGATGGC 895
Query 899 GAGCCAAATACCAACTTATGCAGCTAGTAAGAACCCATAAAGGCATGGACGACACAAGTT 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 GAGCCAAATACCAACTTATGCAGCTAGTAAGAACCCATAAAGGCATGGAAGACACAAGTT 955
Query 959 ATAAGAGCATAGAATTGAGAGAAGACAGAGATGGGAAACAAGGACTGTATGTATCTAGAG 1018
| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 ACAAGAGCATAGAGTTAAGAGAAGACAGAGATGGGAAACAAGGACTATATGTATCTAGAG 1015
Query 1019 ATGTGATGGAAGTTGGTCGCCATGCACTCAAAGCAAACATTGCAACACTTGGTCGTCTTG 1078
|||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1016 ATGTAATGGAAGTTGGGCGCCATGCACTGAAAGCAAACATTGCAACGCTTGGTCGTCTTG 1075
Query 1079 AGCCTTCTTTTGAGCATCTATGTGTATTGGCATCGAGTAAGAAAGCGCTTGATGAGATTC 1138
||||||| ||||| ||| |||| ||||| |||||||||||||||| |||||||| ||||
Sbjct 1076 AGCCTTCCTTTGAACATATATGCGTATTAGCATCGAGTAAGAAAGTACTTGATGACATTC 1135
Query 1139 AAAAGGATCTCAAGTTGACGGAAGAGAATATGGAGGCATCAAGACGGACACTGGAACGTT 1198
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1136 ATAAGGATCTCAAGTTGACAGAAGAGAATATGGAGGCATCAAGACGGACATTGGAGCGTT 1195
Query 1199 TCGGGAATACATCAAGCAGCAGTATATGGTACGAGCTGGCTTACTTGGAACACAAAGG-G 1257
||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1196 TCGGGAACACATCAAGCAGCAGTATATGGTACGAGCTGGCTTACCTAGAACACAA-GGCG 1254
Query 1258 AAAATGAAAAGAG-ATGATAGGGTTTGGCAGATCAGTTTCGGGTCAGGGTTTAAATGCAA 1316
|| |||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1255 AAGATGAAAAGAGGA-GATAGGGTTTGGCAAATCGGTTTCGGGTCAGGGTTTAAATGCAA 1313
Query 1317 CAGTGTTGTATGGAAGGCCCTAAAAAACATTGACTCTCCAAGACACAATAACCCATGGAA 1376
|||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||
Sbjct 1314 TAGTGTTGTATGGAAAGCCCTAAAAAACATTGACCCTCCAAGACATAACAACCCATGGAA 1373
Query 1377 TCTCTGA 1383
|||||||
Sbjct 1374 TCTCTGA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5