BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485580
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52170.1 | Symbols: | DNA binding | chr3:19346799-19349513 ... 1585 0.0
> AT3G52170.1 | Symbols: | DNA binding | chr3:19346799-19349513
REVERSE LENGTH=1893
Length=1893
Score = 1585 bits (858), Expect = 0.0
Identities = 1054/1146 (92%), Gaps = 24/1146 (2%)
Strand=Plus/Plus
Query 624 AAGACATTGGGCTCGTACACCAGTCAGTGGACTCCACTGAGATATCCATGACTCAGCTTG 683
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 638 AAGACATTGGGCTCGTACACCAGTCAATGGACTCCACTGACATATCTATGACTCAGCTTG 697
Query 684 CAGCATCTTGCAGTGAAGAAAATGATATCAAGAGTGATGCAGGGCTACAAAATTGTATGG 743
|| |||||||||||||||| ||||||||||||||| ||||||||||||||||| | ||||
Sbjct 698 CAACATCTTGCAGTGAAGACAATGATATCAAGAGTAATGCAGGGCTACAAAATAGAATGG 757
Query 744 AGACCGTGTGCGATAATGTTGCCACCAAACCCCTGGGTAAAAGAATCGATGTGGATAACA 803
|||| |||||||||| |||| ||||||||| | || ||||||| |||||||||||||||
Sbjct 758 AGACAGTGTGCGATAGCGTTGACACCAAACCACAGGATAAAAGACTCGATGTGGATAACA 817
Query 804 AAGATGAAGGATTTGAGGAACTACCTTTGATGAAATCAGACGACACAAATCCTGTTAAAA 863
|||| ||||||||||||||||| | ||| ||| ||||||||| |||||| |||||||| |
Sbjct 818 AAGACGAAGGATTTGAGGAACTTCGTTTCATGGAATCAGACGGCACAAAGCCTGTTAACA 877
Query 864 ATGACGAAAGACTGAATGATGCAGGAGCAGCAATGACCGAGATTGAGAACGTGAAGAACG 923
||||||| ||| |||||||||||||||||||||||||| || || | |||||||
Sbjct 878 ATGACGATAGAGTGAATGATGCAGGAGCAGCAATGACC------GA-AA--TTAAGAACG 928
Query 924 TATTAGGCATAATTGATATGCCAGCAGAAACAGTTGCTGAGACGTTTCCATTAAAATCTG 983
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 929 GATTAGGCACAATTGATATGTCAGCAGAAACAGTTGTTGAGACGTTTCCATTAAAATCTG 988
Query 984 TGACTTCAACGATGGACTCACCGGATCG-ACAGCCTAGAGACG-TGGACGAAGTTTGTGA 1041
|||||||||||||||||||||||||| | ||| |||| || | || || ||||||||||
Sbjct 989 TGACTTCAACGATGGACTCACCGGAT-GCACAACCTACTGA-GTTGAACAAAGTTTGTGA 1046
Query 1042 GGGTGAGAAAGGAACTGAGACAGAGGTGGAAGCTCATAGCAGCACCA-TAAATCATGTTG 1100
||||| |||||||||||| || |||||||||||| || |||||| || ||||||||||||
Sbjct 1047 GGGTGGGAAAGGAACTGAAACGGAGGTGGAAGCTGATCGCAGCA-CAGTAAATCATGTTG 1105
Query 1101 ATCTTGGGGAGATTTCATCATTCACTTCTTCTGCTGTACTTAAAGAAAAAGGGACGGAAG 1160
||||||||||||||||||||| |||||| |||||||||||| |||| | |||||||||||
Sbjct 1106 ATCTTGGGGAGATTTCATCATCCACTTCATCTGCTGTACTTGAAGACATAGGGACGGAAG 1165
Query 1161 TCATTGTTGGTCAAATGCCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGG 1220
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TCATTGTTGGTCAAATACCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGG 1225
Query 1221 AAATTGTAAATCCTGCTTCAGTAGATGTTGAATGTGCTGATACTAAAGAGACGGTTGTTG 1280
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1226 AAATTGTAAATTCTGCTTCAGTAGATGTTGAATGTGCTGATGCTAAAGAGACAGTTGTTG 1285
Query 1281 CGAGTGGTGTGATTGGCAACATCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAG 1340
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TGAATGGTGTGATTGGCAACGTCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAG 1345
Query 1341 CTGAACGGAAAATGCCAACATCTAGCACTGAGTTGGGAAGTCCTAAGAACGACAAAGCAA 1400
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1346 CTGAACAGAAAATGCCAACATCTAGCACTGAGTCGGGAAGTCGTAAGAACGACAGAGCAA 1405
Query 1401 AAGTGGACACTATGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAA 1460
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AAGTGGACACTGTGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAA 1465
Query 1461 CCATGGAAAAAGGGAAACTTGATGCTCCAGATAGTTCAAGCTCTCAAAAAGAAAACAATG 1520
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1466 CCATGGAAAAAGGGAAAATTGATGCTCCAGATAGTTCCAGCTCTCAAAAAGAAAACAATG 1525
Query 1521 CAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAG 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 CAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAG 1585
Query 1581 AAACAAATCCTCTTTTGGCAGTTCTGAAATCTTTCTTCACAGCCTTTGTGAAGTTTTGGT 1640
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1586 AAACAAATCCTCTCTTGGCAGTTCTGAAATCTTTCGTGACAGCCTTTGTGAAGTTTTGGT 1645
Query 1641 CCGAGTAATAATACATTGTAGAGATCTGTTGGTTAAAGCTTTTGTAGTTTTCATTAGTGA 1700
| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1646 CAGAGTAATAATTCATTGTAGAGATCCGTTGGTTAAA-CTTTTGTAGTTTTCATTAGTGA 1704
Query 1701 GAGTTGGTAAGGTTAAGATAAAAATATGGTTTGAAATGTGCTGTACAATTCTTGTGTTGA 1760
||||||||||| |||| || | ||||||||||||||||||||||| |||||||||
Sbjct 1705 GAGTTGGTAAGCTTAA--TA----T--GGTTTGAAATGTGCTGTACAATTTTTGTGTTGA 1756
Query 1761 ATGTTT 1766
||||||
Sbjct 1757 ATGTTT 1762
Score = 652 bits (353), Expect = 0.0
Identities = 452/496 (91%), Gaps = 22/496 (4%)
Strand=Plus/Plus
Query 1 TGTGTCTGTGTACTGCGTAGGG-TT--T-AGTCCATTTGCGAAGATGACTCGTGAATTCT 56
|||||||||||||||||||||| || | ||||||||||| |||||||||||||| ||||
Sbjct 17 TGTGTCTGTGTACTGCGTAGGGTTTAGTGAGTCCATTTGCAAAGATGACTCGTGAGTTCT 76
Query 57 AATC--TCGCCCTCTCTCTCTTTTTCTCGCGGTTGCAGAGTCGTAGTAGCAGGA-TATAT 113
|||| ||| | ||||||| ||||||||| ||||||||||| | ||||| |||||
Sbjct 77 AATCTATCG-AC-CTCTCTCGTTTTCTCGCAGTTGCAGAGTC----T--CAGGATTATAT 128
Query 114 ATATAGAAC-AA-AGA-A-AG--AACATGCACTCTATGAAGACTAGTTACGCTGGGCAAA 167
| |||| || || ||| | || |||||||||||| | ||||||| || || ||||||||
Sbjct 129 A-ATAGGACAAAGAGAGAGAGACAACATGCACTCTCTTAAGACTACTTGCGTTGGGCAAA 187
Query 168 TTTTTGCTCTAGCTAAGCCTCACGATTCTGGAGGCAAGAGGACTCGTAATCGGATTCCCA 227
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 188 TATTTGCTCTAGCTAAGCCTCACGATTCTGTAGGCAAGAGGACTCGTAATCGGATTCCTA 247
Query 228 AAGAAGAGAGAAAGACACTGGTGGAATCTTTTATAAAGAAGCATCAAAAACTAAACAATG 287
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 248 AAGAAGAGAGAAAGACACTGGTTGAATCTTTTATAAAGAAGCATCAGAAACTAAACAATG 307
Query 288 GGAGTTTTCCTTCACTTAGTCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAA 347
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GGAGTTTTCCTTCACTTAGCCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAA 367
Query 348 GGGAGATTGTCAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTTC 407
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 368 GGGAGATTGTTAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTAC 427
Query 408 TTGAGGGAAATGGCTCTGTGCATGATCAAAGTCTTTCAAGTTCTATCCTGATGGATCCTG 467
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 428 TTGAGGGAAATGGCTCTGTGCAAGATCAAAGTCTGTCAAGTTCAATCCTGATGGATCCTG 487
Query 468 TGCCCCCTTTATCTTT 483
||||||||||||||||
Sbjct 488 TGCCCCCTTTATCTTT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5