BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485580 Length=1782 Score E Sequences producing significant alignments: (Bits) Value AT3G52170.1 | Symbols: | DNA binding | chr3:19346799-19349513 ... 1585 0.0 > AT3G52170.1 | Symbols: | DNA binding | chr3:19346799-19349513 REVERSE LENGTH=1893 Length=1893 Score = 1585 bits (858), Expect = 0.0 Identities = 1054/1146 (92%), Gaps = 24/1146 (2%) Strand=Plus/Plus Query 624 AAGACATTGGGCTCGTACACCAGTCAGTGGACTCCACTGAGATATCCATGACTCAGCTTG 683 |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct 638 AAGACATTGGGCTCGTACACCAGTCAATGGACTCCACTGACATATCTATGACTCAGCTTG 697 Query 684 CAGCATCTTGCAGTGAAGAAAATGATATCAAGAGTGATGCAGGGCTACAAAATTGTATGG 743 || |||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||| Sbjct 698 CAACATCTTGCAGTGAAGACAATGATATCAAGAGTAATGCAGGGCTACAAAATAGAATGG 757 Query 744 AGACCGTGTGCGATAATGTTGCCACCAAACCCCTGGGTAAAAGAATCGATGTGGATAACA 803 |||| |||||||||| |||| ||||||||| | || ||||||| ||||||||||||||| Sbjct 758 AGACAGTGTGCGATAGCGTTGACACCAAACCACAGGATAAAAGACTCGATGTGGATAACA 817 Query 804 AAGATGAAGGATTTGAGGAACTACCTTTGATGAAATCAGACGACACAAATCCTGTTAAAA 863 |||| ||||||||||||||||| | ||| ||| ||||||||| |||||| |||||||| | Sbjct 818 AAGACGAAGGATTTGAGGAACTTCGTTTCATGGAATCAGACGGCACAAAGCCTGTTAACA 877 Query 864 ATGACGAAAGACTGAATGATGCAGGAGCAGCAATGACCGAGATTGAGAACGTGAAGAACG 923 ||||||| ||| |||||||||||||||||||||||||| || || | ||||||| Sbjct 878 ATGACGATAGAGTGAATGATGCAGGAGCAGCAATGACC------GA-AA--TTAAGAACG 928 Query 924 TATTAGGCATAATTGATATGCCAGCAGAAACAGTTGCTGAGACGTTTCCATTAAAATCTG 983 |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 929 GATTAGGCACAATTGATATGTCAGCAGAAACAGTTGTTGAGACGTTTCCATTAAAATCTG 988 Query 984 TGACTTCAACGATGGACTCACCGGATCG-ACAGCCTAGAGACG-TGGACGAAGTTTGTGA 1041 |||||||||||||||||||||||||| | ||| |||| || | || || |||||||||| Sbjct 989 TGACTTCAACGATGGACTCACCGGAT-GCACAACCTACTGA-GTTGAACAAAGTTTGTGA 1046 Query 1042 GGGTGAGAAAGGAACTGAGACAGAGGTGGAAGCTCATAGCAGCACCA-TAAATCATGTTG 1100 ||||| |||||||||||| || |||||||||||| || |||||| || |||||||||||| Sbjct 1047 GGGTGGGAAAGGAACTGAAACGGAGGTGGAAGCTGATCGCAGCA-CAGTAAATCATGTTG 1105 Query 1101 ATCTTGGGGAGATTTCATCATTCACTTCTTCTGCTGTACTTAAAGAAAAAGGGACGGAAG 1160 ||||||||||||||||||||| |||||| |||||||||||| |||| | ||||||||||| Sbjct 1106 ATCTTGGGGAGATTTCATCATCCACTTCATCTGCTGTACTTGAAGACATAGGGACGGAAG 1165 Query 1161 TCATTGTTGGTCAAATGCCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGG 1220 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1166 TCATTGTTGGTCAAATACCAAATCATATTTCTGTCCCTATGGAAAAGAAAGTTGGAGAGG 1225 Query 1221 AAATTGTAAATCCTGCTTCAGTAGATGTTGAATGTGCTGATACTAAAGAGACGGTTGTTG 1280 ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1226 AAATTGTAAATTCTGCTTCAGTAGATGTTGAATGTGCTGATGCTAAAGAGACAGTTGTTG 1285 Query 1281 CGAGTGGTGTGATTGGCAACATCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAG 1340 || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1286 TGAATGGTGTGATTGGCAACGTCCATGAGACAAAGGAATTTAGTAATGGAACTTTGACAG 1345 Query 1341 CTGAACGGAAAATGCCAACATCTAGCACTGAGTTGGGAAGTCCTAAGAACGACAAAGCAA 1400 |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 1346 CTGAACAGAAAATGCCAACATCTAGCACTGAGTCGGGAAGTCGTAAGAACGACAGAGCAA 1405 Query 1401 AAGTGGACACTATGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAA 1460 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1406 AAGTGGACACTGTGAGTAGCTATGCCGGGAATGAAGTCGCAAGTGTAGAGAAGAAGGCAA 1465 Query 1461 CCATGGAAAAAGGGAAACTTGATGCTCCAGATAGTTCAAGCTCTCAAAAAGAAAACAATG 1520 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1466 CCATGGAAAAAGGGAAAATTGATGCTCCAGATAGTTCCAGCTCTCAAAAAGAAAACAATG 1525 Query 1521 CAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAG 1580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1526 CAACATTAAACAGAATTAAACCTGAATCGTGGAAAGGGGAATCTAATATGGGAAGACAAG 1585 Query 1581 AAACAAATCCTCTTTTGGCAGTTCTGAAATCTTTCTTCACAGCCTTTGTGAAGTTTTGGT 1640 ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1586 AAACAAATCCTCTCTTGGCAGTTCTGAAATCTTTCGTGACAGCCTTTGTGAAGTTTTGGT 1645 Query 1641 CCGAGTAATAATACATTGTAGAGATCTGTTGGTTAAAGCTTTTGTAGTTTTCATTAGTGA 1700 | |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1646 CAGAGTAATAATTCATTGTAGAGATCCGTTGGTTAAA-CTTTTGTAGTTTTCATTAGTGA 1704 Query 1701 GAGTTGGTAAGGTTAAGATAAAAATATGGTTTGAAATGTGCTGTACAATTCTTGTGTTGA 1760 ||||||||||| |||| || | ||||||||||||||||||||||| ||||||||| Sbjct 1705 GAGTTGGTAAGCTTAA--TA----T--GGTTTGAAATGTGCTGTACAATTTTTGTGTTGA 1756 Query 1761 ATGTTT 1766 |||||| Sbjct 1757 ATGTTT 1762 Score = 652 bits (353), Expect = 0.0 Identities = 452/496 (91%), Gaps = 22/496 (4%) Strand=Plus/Plus Query 1 TGTGTCTGTGTACTGCGTAGGG-TT--T-AGTCCATTTGCGAAGATGACTCGTGAATTCT 56 |||||||||||||||||||||| || | ||||||||||| |||||||||||||| |||| Sbjct 17 TGTGTCTGTGTACTGCGTAGGGTTTAGTGAGTCCATTTGCAAAGATGACTCGTGAGTTCT 76 Query 57 AATC--TCGCCCTCTCTCTCTTTTTCTCGCGGTTGCAGAGTCGTAGTAGCAGGA-TATAT 113 |||| ||| | ||||||| ||||||||| ||||||||||| | ||||| ||||| Sbjct 77 AATCTATCG-AC-CTCTCTCGTTTTCTCGCAGTTGCAGAGTC----T--CAGGATTATAT 128 Query 114 ATATAGAAC-AA-AGA-A-AG--AACATGCACTCTATGAAGACTAGTTACGCTGGGCAAA 167 | |||| || || ||| | || |||||||||||| | ||||||| || || |||||||| Sbjct 129 A-ATAGGACAAAGAGAGAGAGACAACATGCACTCTCTTAAGACTACTTGCGTTGGGCAAA 187 Query 168 TTTTTGCTCTAGCTAAGCCTCACGATTCTGGAGGCAAGAGGACTCGTAATCGGATTCCCA 227 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 188 TATTTGCTCTAGCTAAGCCTCACGATTCTGTAGGCAAGAGGACTCGTAATCGGATTCCTA 247 Query 228 AAGAAGAGAGAAAGACACTGGTGGAATCTTTTATAAAGAAGCATCAAAAACTAAACAATG 287 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 248 AAGAAGAGAGAAAGACACTGGTTGAATCTTTTATAAAGAAGCATCAGAAACTAAACAATG 307 Query 288 GGAGTTTTCCTTCACTTAGTCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAA 347 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 308 GGAGTTTTCCTTCACTTAGCCTCACACACAAGGAGGTTGGTGGATCTTTCTACACTATAA 367 Query 348 GGGAGATTGTCAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTTC 407 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 368 GGGAGATTGTTAGAGAGATTATCCAAGAAAATAGAGTCCTTGGTCCTGGTGACTTGCTAC 427 Query 408 TTGAGGGAAATGGCTCTGTGCATGATCAAAGTCTTTCAAGTTCTATCCTGATGGATCCTG 467 |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 428 TTGAGGGAAATGGCTCTGTGCAAGATCAAAGTCTGTCAAGTTCAATCCTGATGGATCCTG 487 Query 468 TGCCCCCTTTATCTTT 483 |||||||||||||||| Sbjct 488 TGCCCCCTTTATCTTT 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88152157020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5