BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485582
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52180.1 | Symbols: ATPTPKIS1, DSP4, SEX4, ATSEX4 | dual spe... 1893 0.0
AT3G52535.1 | Symbols: | other RNA | chr3:19487129-19488556 FO... 121 2e-26
> AT3G52180.1 | Symbols: ATPTPKIS1, DSP4, SEX4, ATSEX4 | dual specificity
protein phosphatase (DsPTP1) family protein | chr3:19349652-19353596
REVERSE LENGTH=1509
Length=1509
Score = 1893 bits (1025), Expect = 0.0
Identities = 1308/1434 (91%), Gaps = 62/1434 (4%)
Strand=Plus/Plus
Query 1 TTTTTGGACATGAATTGAAAAATTATTATAATTACCAGA-TTTTTATGTATCGTCG-A-- 56
||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
Sbjct 8 TTTTTGGACATGAATTG-AAAATTATTATAATTACCAGATTTTTTATCTATCGTCGAACT 66
Query 57 ----AC--------T---AGCTTCGTTTGCTTCCTCTGATATTTTTGCTACA-------- 93
|| | |||||||||||||||||||||||||||| |||||
Sbjct 67 TGGGACTGAGAAAGTAGCAGCTTCGTTTGCTTCCTCTGATATTTTT-CTACACTCTCTGT 125
Query 94 CTCTCTC-AATA-ATGAATTGCCTTCAGAATCTTCCCAGATGTTTGGTCTCACCTCTGCT 151
||||||| || | |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 126 CTCTCTCTAA-AGATGAATTGTCTTCAGAATCTTCCCAGATGTTCAGTCTCACCTCTGCT 184
Query 152 GGGATTTGGGTGCAATCACAGAG---A-TC--CTTCTTCTTCTTCTTTGAAGATGCTGGT 205
|||||| ||||||| ||| |||| | || ||||||||||||||||||||||||| |
Sbjct 185 GGGATTCGGGTGCATTCAAAGAGATCATTCTTCTTCTTCTTCTTCTTTGAAGATGCTAAT 244
Query 206 ATCACCTCCGATCAAAGCCAATGATCCAAAATCTCGACtttttttACAGGCAGTATCAGA 265
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 245 ATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATGCAGTATCAGA 304
Query 266 GTCAAAGTCCAGCTCAGAGATGAGTGGTGTTTCAAAAGAGGAAGAGAAATCTGATGAATA 325
|||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 305 GTCAAAATCCAGCTCAGAGATGAGTGGTGTTGCAAAGGATGAAGAGAAATCTGATGAATA 364
Query 326 TAGCCAAGACATGACTCAAGCTATGGGTGCTGTTTTAACTTACAGGCACGAGTTAGGAAT 385
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 365 TAGCCAAGACATGACTCAAGCTATGGGTGCTGTTCTAACTTACAGGCACGAGTTAGGAAT 424
Query 386 GAACTACAACTTTATTCGTCCAGATTTAATTGTTGGATCCTGCTTACAGACCCCTGAAGA 445
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 425 GAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGACCCCTGAAGA 484
Query 446 TGTTGACAAGCTTCGTAAAATTGGGGTCAAAACTATATTTTGCTTGCAACAAGATCCAGA 505
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 485 TGTTGACAAGCTTCGTAAAATTGGAGTTAAAACCATATTTTGCTTGCAACAAGATCCAGA 544
Query 506 CTTGGAATATTTTGGAGTAGACATAAGAAGCATTCAAGCCTATGCTAAGAAATATAGTGA 565
| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 545 CCTGGAATATTTTGGAGTAGACATAAGCAGCATCCAAGCCTATGCTAAGAAATATAGTGA 604
Query 566 TATTCAGCATATTCGCTGTGAAATCAGAGACTTTGATGCATTTGATTTGAGAATGCGTCT 625
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 605 TATTCAGCATATTCGCTGTGAAATTAGAGACTTTGATGCATTTGATTTGAGAATGCGTCT 664
Query 626 TCCAGCTGTGGTTAGTACACTTTACAAAGCTGTTAAGAGAAATGGAGGAGTTACATATGT 685
|||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 665 TCCAGCCGTGGTTGGTACTCTTTACAAAGCTGTTAAGCGAAATGGAGGAGTTACATATGT 724
Query 686 GCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGTGTTGACATACATGTTCTGGGT 745
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 725 GCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGCGTTGACATACATGTTCTGGGT 784
Query 746 GCAAGGCTATAAACTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCATGTTTTCC 805
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 785 GCAAGGCTATAAGCTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCGTGCTTTCC 844
Query 806 GAAGCTGGATGCTATCAGAAATGCTACAATTGATATTCTTACAGGACTGAAGAAGAAGAC 865
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 845 GAAGCTGGATGCTATCAGAAATGCAACAATTGATATTCTTACAGGACTCAAGAGGAAGAC 904
Query 866 TGTTACTCTGACACTGAAAGACAAGGGATTCTCCTCAGTAGAAATTTCTGGCCTTGACAT 925
||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 905 TGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACAT 964
Query 926 TGGATGGGGACAGAGGATACCTTTAACACTGGACAAAGGAACAGGATTTTGGACCCTAAA 985
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||
Sbjct 965 TGGATGGGGACAGAGGATACCTCTAACACTGGACAAGGGAACAGGATTCTGGATCCTAAA 1024
Query 986 GAGAGAACTGCCTGAAGGGCAGTTTGAATATAAATACATCATAGATGGTGAATGGGCACA 1045
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1025 GAGAGAACTGCCTGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACA 1084
Query 1046 CAATGAGGCTGAACCGTTTATAGGACCTAACAAAGATGGCCATACCAACAATTACACGAA 1105
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1085 CAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAA 1144
Query 1106 AGTAGTGGATGATCCAACGAGTGTGGATGGTGCAACTCGGGAGAGACTATCGAGCGAAGA 1165
||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1145 AGTAGTGGACGATCCAACAAGTGTGGATGGTACAACTCGGGAGAGACTATCGAGCGAAGA 1204
Query 1166 CCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGA 1264
Query 1226 GGCAGA-GATTTGAAAGTTGAAAGCATT----TAGACAATGTGAATGTACAACTTACTAC 1280
|||||| | ||||| |||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1265 GGCAGAAG-TTTGAGAGTTGAGAGCATCCGACTAGACTATGTGAATGTACAACTTACTA- 1322
Query 1281 TAGTAACAAGAAAATAAAATGCTTCATGTTGGTAATACATG-AGGTTACGTTTATTATAG 1339
||||||| |||||||||||||||| ||||||||| || ||||| |||| | |
Sbjct 1323 --GTAACAA-----TAAAATGCTTCATGTTAGTAATACATACAG-TTACGCTTAT-A--G 1371
Query 1340 CAGCAA--GAAAATA---TGAAGTTAGTTGTACTATGTTCTAGTATTATATATA 1388
|||||| ||||| | |||||||||| ||||||||||| ||||| |||||||
Sbjct 1372 CAGCAAAAGAAAAAAACATGAAGTTAGTAGTACTATGTTCAAGTATAATATATA 1425
> AT3G52535.1 | Symbols: | other RNA | chr3:19487129-19488556
FORWARD LENGTH=479
Length=479
Score = 121 bits (65), Expect = 2e-26
Identities = 97/111 (87%), Gaps = 8/111 (7%)
Strand=Plus/Plus
Query 592 GAGACTTTGATGCATTTGATTTGAGAATGCGTCTTCCAG-CTGTGGTTAGTACACTTTAC 650
||| ||||||||||||||||||||||||||||||||| | | |||||||||||||| | |
Sbjct 133 GAGGCTTTGATGCATTTGATTTGAGAATGCGTCTTCCTGAC-GTGGTTAGTACACTGTCC 191
Query 651 AAAGCTGTTAAG-AGAAATGGAGGAGTTACATAT-GTGCAC--TGCACTGC 697
||||||| |||| | |||||||| |||||||| | |||||| ||||||||
Sbjct 192 AAAGCTGCTAAGCA-AAATGGAGAAGTTACAT-TCGTGCACACTGCACTGC 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5