BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485583
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52190.1 | Symbols: PHF1 | phosphate transporter traffic fac... 2115 0.0
> AT3G52190.1 | Symbols: PHF1 | phosphate transporter traffic facilitator1
| chr3:19353972-19357074 REVERSE LENGTH=1506
Length=1506
Score = 2115 bits (1145), Expect = 0.0
Identities = 1294/1363 (95%), Gaps = 21/1363 (2%)
Strand=Plus/Plus
Query 62 GATCCAAATTGGAGAGAGAGACCAAAGAGGAAATTAATTATCAATCAAT-C--CAACGAA 118
|||||||||| || |||||||||||||||||||||| || |||||||| | |||||||
Sbjct 109 GATCCAAATT--AGGGAGAGACCAAAGAGGAAATTAA-TAACAATCAATCCAACAACGAA 165
Query 119 TGGCGATTGAAGAAGCGAGTCGTGAAAGTGGACATGTTGTGTGCGGATCATGGATTCGTC 178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 TGGAGATTGAAGAAGCGAGTCGTGAAAGTGGACATGTTGTGTGCGGATCATGGATTCGTC 225
Query 179 GCCCAAAGAAAGTAAACTGGGTTCTTATCGCTAAAGCTTCTAAACGCCGTGGCTCATCTG 238
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 226 GCCCGAAGAAAGTAAACTGGGTTCTTATCGCTAAAGCTTCCAAACGCCGTGGCTCATCTG 285
Query 239 TTTCTTCTCCTGCTCTCCTCAACATCTTCTCTTTTGACTCCGTTACTGCTTCCCTCTCCT 298
|||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||
Sbjct 286 TTTCTTCTCCTGCTCTCCTCAACATCTTCTCTTTTGACCCCATTACTGCTTCTCTTTCCT 345
Query 299 CCTCTCCCTTGGCAACACATACGCTAAAGGAGAGTGATGGTGATCCTGTGACTGTTTCAG 358
||||||| ||||||||||| ||||| ||||| |||||||||||||||||| |||||||||
Sbjct 346 CCTCTCCTTTGGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAG 405
Query 359 TGCATCCTGGTGGAGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAAGTCATTTG 418
|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 406 TGCACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAAGTTATTTG 465
Query 419 AGATTGTTGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAA 478
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAA 525
Query 479 ATGCTGGACTACAAAAGTGTATGGCCTTCAGCTTTGATGGGTCTAAACTAGCTGTTGGTG 538
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 526 ATGCTGGACTACAAAAGTGTATGGCCTTCAGCTTTGATGGGTCTAAATTAGCTGTTGGGG 585
Query 539 GAGTGGATGGGTGTCTCAGAATTATGGAGTGGCCAAACCTACA-TGTAATTTTGGATGAG 597
|||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 586 GAGTGGATGGATGTCTTAGAATTATGGAGTGGCCAAACCTA-AGTGTAATTTTGGATGAG 644
Query 598 CCAAAGGCACACAAATCCATCCGGGACATGGATTTTAGTCTTGACTCAGAGTTCTTAGCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CCAAAGGCACACAAATCCATCCGGGACATGGATTTTAGTCTTGACTCAGAGTTCTTAGCT 704
Query 658 ACAACATCAACTGATGGATCAGCTAGAATATGGAAAGCAGAAGATGGTTTTCCTTTGTCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ACAACATCAACTGATGGATCAGCTAGAATATGGAAAGCAGAAGATGGTTTTCCTTTGTCT 764
Query 718 ACTTTGGAACGTAGTGGGGATGAAAATATTGAACTGTGCCGTTTCTCTAAAGATGGAACA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 ACTTTGGAACGTAGTGGGGATGAAAATATTGAACTGTGCCGTTTCTCTAAAGACGGAACA 824
Query 778 AAACCTTTTTTGTTTTGTGCTGCTCAAAAAGGTGATACGCCTGTGGTCAATGTTTATGAC 837
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 825 AAACCTTTTTTGTTTTGTGCTGCTCAAAGAGGTGATACGCCTATGGTCAATGTTTATGAC 884
Query 838 ATTAGTACATGGAAGAAGCTTGGGTTCAAGAAGCTGTCAAGGAAGACTGCATCGACAATG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATTAGTACATGGAAGAAGCTTGGGTTCAAGAAGCTGTCAAGGAAGACTGCATCGACAATG 944
Query 898 GCAGTGAGCTTGGATGGGAAATATATTGCTTTGGGTGGGAAAGATGGAGATGTATCTGTT 957
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GCAGTGAGCTTGGACGGGAAATATATTGCTTTGGGTGGGAAAGATGGAGATGTATCTGTT 1004
Query 958 GCTGAAGTTAAGACAATGGAAATCTACCACTACAGTAAGAGGCTACATCTTGGTCAATCC 1017
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1005 GCTGAAGTTAAGACAATGGAAATCTACCACTACAGTAAGAGGCTGCATCTTGGTCAATCC 1064
Query 1018 ATTGCTTCACTTGAGTTCTGCCCTAGTGAAAGGGTTATACTGACAACTTCGAGTGAATGG 1077
||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct 1065 ATTGCTTCACTTGAGTTCTGCCCCAGTGAAAGGGTTATGCTGACAACTTCTAGCGAATGG 1124
Query 1078 GGTGAGATGGTGACCAAACTCAGTGTACCAAAGGAGTGGAAAGAGTGGCAGATATATGCA 1137
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1125 GGAGAGATGGTGACCAAACTCACTGTACCAAAGGAGTGGAAAGAGTGGCAGATATATGCA 1184
Query 1138 CTGCTGTTTTGCTTGTTCATGGCATCAGTGATAGCTGCATACGTTTTCTTCGAGAACTCA 1197
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1185 CTGCTGTTTTGCTTGTTCATGGCATCAGTGATAGCTGCATACGTATTCTTCGAGAACTCA 1244
Query 1198 GATTCGTTTTGGCAGTTACCAATGGGGAAAGATCAGAAAAGACCAAAGATAAGTCTTTTT 1257
|||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 1245 GATTCGTTTTGGAAGTTACCAATGGGAAAAGATCAAAAAAGACCAAAGATTAGTCTATTT 1304
Query 1258 GGAGGTTCCTCC---ACGCCTTCTGAGGATCATAGTAGGTGGAACTTGGACCTATAGAAA 1314
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GGAGGTTCCTCCTCCACGCCTTCTGAGGATCATAGTAGGTGGAACTTGGACCTATAGAAA 1364
Query 1315 GTTTATGTAACTTTCCTCTGCtttttttttCTTCTTCTTCCAAATCTTGTTGCAATGttt 1374
| |||||||||||||||||||||||| || ||| | ||||| ||||||||||| ||||
Sbjct 1365 GATTATGTAACTTTCCTCTGCTTTTTCTT-CTT-T-CTTCCTTATCTTGTTGCAGCGTTT 1421
Query 1375 ttttttC-------CCTTTCTTCTGATTTTGCTCTGACGAATA 1410
|||||| |||||||||||||||||||||||| ||||
Sbjct 1422 TTTTTTGTTTTTTTCCTTTCTTCTGATTTTGCTCTGACAAATA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5