BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485584
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52200.2 | Symbols: LTA3 | Dihydrolipoamide acetyltransferas... 3201 0.0
> AT3G52200.2 | Symbols: LTA3 | Dihydrolipoamide acetyltransferase,
long form protein | chr3:19360206-19366387 FORWARD LENGTH=2549
Length=2549
Score = 3201 bits (1733), Expect = 0.0
Identities = 1871/1937 (97%), Gaps = 12/1937 (1%)
Strand=Plus/Plus
Query 324 AGGACCCATATCACAGACGGTTCTTGCAATGCCAGCATTGTCTCCTACTATGAGTCATGG 383
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 579 AGGACCCATATCACAGACGGTTCTTGCAATGCCAGCCTTGTCTCCTACTATGAGTCATGG 638
Query 384 AAATGTTGTGAAATGGATGAAGAAAGAAGGTGACAAGGTAGAGGTGGGTGATGTACTATG 443
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AAATGTTGTAAAATGGATGAAGAAAGAAGGTGACAAGGTAGAGGTGGGTGATGTACTATG 698
Query 444 TGAAATAGAGACAGACAAAGCCACTGTAGAATTTGAGAGTCAAGAGGAAGGATTTCTGGC 503
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TGAGATAGAGACAGACAAAGCCACTGTAGAATTTGAGAGTCAAGAGGAAGGATTTCTGGC 758
Query 504 CAAGATTTTAGTCACTGAAGGATCAAAGGATATCCCTGTTAATGAACCGATTGCAATAAT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CAAGATTTTAGTCACTGAAGGATCAAAGGATATCCCTGTTAATGAACCGATTGCAATAAT 818
Query 564 GGTTGAGGAGGAAGACGACATTCAAAACGTTCCTGCTACCATAGAGGGTGGACGAGTTGG 623
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 819 GGTTGAGGAGGAAGACGACATTAAAAACGTTCCTGCTACCATAGAGGGTGGACGAGATGG 878
Query 624 TAAAGAGGAAACATCAGCTCAGCAAGAGATGAAACCTGACGAAAGCACACAACAAAAAGG 683
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 879 TAAAGAGGAAACATCAGCTCATCAAGTGATGAAACCTGACGAAAGCACACAACAAAAAAG 938
Query 684 TTCCATTCAGCCCGATACATCAGATCTTCCCCCACATGTCGTCTTAGAAATGCCAGCACT 743
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TTCCATTCAGCCCGATGCATCAGATCTTCCCCCACATGTCGTCTTAGAAATGCCAGCACT 998
Query 744 TTCTCCTACAATGAACCAAGGTAACATTGCCAAATGGTGGAAAAAAGAGGGTGACAAGAT 803
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 999 TTCTCCTACAATGAACCAAGGTAATATTGCCAAATGGTGGAAAAAAGAGGGTGACAAGAT 1058
Query 804 TGAAGTGGGTGATGTCATAGGTGAGATCGAGACTGACAAAGCCACTCTGGAATTTGAAAG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGAAGTGGGTGATGTCATAGGTGAGATCGAGACTGACAAAGCCACTCTGGAATTTGAAAG 1118
Query 864 CCTTGAAGAGGGGTACTTGGCTAAAATTCTAATTCCTGAAGGTTCCAAGGATGTGGCGGT 923
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1119 CCTTGAAGAGGGGTACTTAGCTAAGATTCTAATTCCTGAAGGTTCCAAGGATGTGGCGGT 1178
Query 924 TGGAAAGCCAATTGCCCTTATAGTTGAAGATGCTGAAAGTATTGAAGTCATCAAGTCTTC 983
|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1179 GGGAAAGCCGATTGCCCTAATAGTTGAAGATGCTGAAAGTATTGAAGCCATCAAGTCTTC 1238
Query 984 TTCCGCAGGTAGTTCTGAGGTTGAGACAGTTAAAGAAGTCCCTCACAGTGTTGTAGATAA 1043
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1239 TTCCGCAGGTAGTTCTGAGGTTGATACAGTTAAAGAAGTCCCTGACAGTGTTGTAGATAA 1298
Query 1044 ACCTACAGGGAGGAAAGCAGGCTTCACAAAGATCAGTCCTGCTGCAAAACTATTGATTTT 1103
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1299 ACCTACAGAGAGGAAAGCAGGCTTCACAAAGATCAGTCCTGCTGCAAAGCTATTGATTTT 1358
Query 1104 AGGACATGGATTGGAGGCATCATCAATTGAGGCGTCGGGTCCCTATGGTACATTACTGAA 1163
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1359 AGAACATGGATTGGAGGCATCATCAATTGAGGCATCGGGTCCCTATGGTACATTATTGAA 1418
Query 1164 ATCAGACGTTGTGGCCGCAATTGCTTCTGGAAAAGTTTCTAAAACATCTGCTTCTACGAA 1223
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 1419 ATCAGACGTTGTGGCCGCAATTGCTTCTGGAAAAGCTTCTAAATCATCTGCGTCTACGAA 1478
Query 1224 GAAGAAGCAACCGTCAAAGGAGACTCCGTCTAAATCCTCATCCACATCAAAGTCTTCTGT 1283
|||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||
Sbjct 1479 GAAGAAGCAACCATCAAAGGAGACCCCGTCTAAATCCTCCTCCACATCGAAGCCTTCTGT 1538
Query 1284 GACACAGTCAG---ATAATTATGAAGATTTTCCCAATAGTCAAATTCGCAAGATTATAGC 1340
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1539 GACACAGTCAGATAATAATTATGAAGATTTTCCAAATAGTCAAATTCGCAAGATTATAGC 1598
Query 1341 AAAACGTTTATTGGAATCAAAACAGAAGACACCCCATTTGTATTTACAATCAGATGTTGT 1400
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1599 AAAACGTTTATTGGAATCAAAACAGAAGATACCCCATTTGTATTTACAATCAGATGTTGT 1658
Query 1401 ATTGGATCCTCTTCTTGCATTTAGAAAAGAACTTCAAGAAAGCCATGGCGTTAAAGTGTC 1460
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1659 ATTGGATCCTCTTCTTGCATTTAGAAAAGAACTTCAAGAAAACCATGGCGTTAAAGTGTC 1718
Query 1461 TGTCAATGACATAGTTATTAAAGCAGTGGCAGTCGCACTGAGGAATGTACGGCAAGCTAA 1520
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1719 TGTCAATGACATAGTTATTAAAGCAGTGGCAGTCGCACTGAGGAATGTACGACAAGCTAA 1778
Query 1521 TGCTTTCTGGGATGCTGAGAAAGGAGATATCGTTATGTGTGACAGTGTTGACATATCAAT 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 TGCTTTCTGGGATGCTGAGAAAGGAGATATCGTTATGTGTGACAGTGTTGACATATCAAT 1838
Query 1581 TGCAGTTGCAACTGAGAAGGGCTTAATGACTCCAATTATCAAGAATGCAGACCAGAAATC 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 TGCAGTTGCAACTGAGAAGGGCTTAATGACTCCAATTATCAAGAATGCAGACCAGAAATC 1898
Query 1641 TATTTCTGCTATTTCCTTAGAGGTTAAGGAGCTGGCACAAAAGGCGCGTTCTGGAAAGCT 1700
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1899 TATTTCTGCTATTTCCTTAGAGGTTAAGGAGCTGGCACAAAAGGCTCGATCTGGAAAGCT 1958
Query 1701 TGCTCCTCATGAGTTTCAAGGAGGGACATTCAGCATATCAAATCTAGGGATGTATCCTGT 1760
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1959 TGCTCCTCATGAGTTTCAAGGAGGGACATTCAGCATATCAAATCTAGGAATGTATCCTGT 2018
Query 1761 GGACCATTTCTGCGCAATCATTAACCCCCCTCAGGCTGGGATTCTAGCAGTTGGTAGAGG 1820
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GGATAATTTCTGCGCAATCATTAACCCCCCTCAGGCTGGGATTCTAGCAGTTGGTAGAGG 2078
Query 1821 AAATAAAGTGGTTGAGCCAGTTATTGGACTAGATGGAATTGAGAAGCCTTCTGTTGTAAC 1880
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2079 AAACAAAGTGGTTGAGCCAGTTATTGGACTAGATGGAATTGAGAAGCCTTCTGTTGTGAC 2138
Query 1881 GAAAATGAATGTAACGTTATCCGCTGATCATCGGATCTTTGATGGACAAGTTGGAGCTTC 1940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 AAAAATGAATGTAACGTTATCCGCTGATCATCGGATCTTTGATGGACAAGTTGGAGCTTC 2198
Query 1941 GTTTATGTCTGAATTGCGTTCAAACTTTGAGGATGTTCGAAGACTTCTTCTGTGAGAAAG 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 GTTTATGTCTGAATTGCGTTCAAACTTTGAGGATGTTCGAAGACTTCTTCTGTGAGAAAG 2258
Query 2001 ATCCAAGTGTTTATCAAATGAATCTTGGATTACTACATAATAAACCTCGGACCAACCCAC 2060
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 ATCCAACTGTTTACCAAATGAATCTTGGATTACTACATAATAAACCTCGGACCAACCCAC 2318
Query 2061 GTGCACATCCAGAACCAGAAAGAACTGCTGGTCTACAGGGTTAACTCTGATCACATGTTT 2120
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2319 GTGCACATCCAGAACCAGAA----CTGCTGGTCTACATTGTTAACTCTGATCACATGTTT 2374
Query 2121 CAtttttttCCATTTGGTTCATACT-CT-ACCAAAATTTGTTTTGGTCTT-AT-AATTCG 2176
||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||
Sbjct 2375 CATTTTTTTCCATTTGGTTCATA-TACTTACCAAAATTTGTTTTGGTCTTTAACAATTCG 2433
Query 2177 TCTTATAGATTGGTAACTTCATGAGGTATTTTTTGTTTGCTCTGTCTTCCGCAAAATAAA 2236
|||||||||||||||||||| ||||||||||||||| || |||||| || ||||||||||
Sbjct 2434 TCTTATAGATTGGTAACTTCCTGAGGTATTTTTTGTCTGGTCTGTCCTCTGCAAAATAAA 2493
Query 2237 TAAATTCAGCTGTCAAT 2253
||| |||||||||||||
Sbjct 2494 TAATTTCAGCTGTCAAT 2510
Score = 473 bits (256), Expect = 3e-132
Identities = 305/327 (93%), Gaps = 9/327 (3%)
Strand=Plus/Plus
Query 1 AAAGTGTTACGATTCGATATCATCATCGTCTCTCTCTCCCATTTGTGATTTTCTCAAACC 60
|||||||||||||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct 33 AAAGTGTTACGATTCG--GT-ATCATCG--TCTCTCT--CATTTGTGATTTTGTCAAACC 85
Query 61 CT-C-CTCTTTTCTCGAAGAGCTCTCATGGTGCTTCCGCTCTTCCGGCGCGCTGCGATCG 118
|| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CTGCTCTCTTTTCTCCAAGTGCTCTCATGGTGCTTCCGCTCTTCCGGCGCGCTGCGATCG 145
Query 119 CCCGGACTTCCTCGCTTCTCAGAGCTCGTCTTTTTGTTCCTGCCTCCGGATTCCATTCTC 178
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 146 CCCGGACTTCCTCGCTTCTCAGAGCTCGTCTTTTCGCTCCTGCCTCCGAATTCCATTCTC 205
Query 179 GCTTTTCCAATGGACTATACCACTTGGACGACAAGATTCGTAGCAGTAATGGTGTGAGGT 238
||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 206 GCTTTTCTAATGGACTATACCACTTGGACGACAAAATTAGTAGCAGTAATGGTGTGAGGT 265
Query 239 CTGCCTCTATAGACATGATTACAAGAATGGATGATAGTCCTCCAAAGCCCATTTTGCGAT 298
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 266 CTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCCCATTCTGCGAT 325
Query 299 TTGGCGTGCAAAACTTTTCATCTACAG 325
|||||||||||||||||||||||||||
Sbjct 326 TTGGCGTGCAAAACTTTTCATCTACAG 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112800624615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5