BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485587
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52210.3 | Symbols: | S-adenosyl-L-methionine-dependent met... 1849 0.0
> AT3G52210.3 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:19367018-19369494
FORWARD LENGTH=1286
Length=1286
Score = 1849 bits (1001), Expect = 0.0
Identities = 1128/1189 (95%), Gaps = 9/1189 (1%)
Strand=Plus/Plus
Query 1 GCCGGAGAAGaaaaaaaTGAGCGGCTTCGCGGTTTCAAAACCGGAGCAGAGTCATTATCG 60
||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 2 GCCGGAGAAGAAAGACATGAGCGGCTTCGTGGTTTCAAAACCGGAGCAGAGCCATCATCG 61
Query 61 TCTCTTCGATTTCGCAAAGACGGCCATAATCAACATCTTCGCACATCCTTACACCACTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 TCTCTTCGATTTCGCAAAGACGGCCATAATCAACATCTTCGCACATCCTTATGCCACTGT 121
Query 121 TTGCGAATTGTACTGTGGCGGAGCTCCCGACACTGACAAGTGGGAAGCTGCTCCGATTGG 180
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 122 TTGCGAATTGTACTGTGGCGGAGCTCCCGAAACCGACAAGTGGGAAGCTGCTCCGATTGG 181
Query 181 TCATTACATCGGAATTGTAGATACTTCTTCTGGAATTTCTTCTGTACGAGAAGCTTGGGA 240
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 182 TCACTACATCGGAATTGTAGATACATCTTCTGGGATTTCTTCTGTACGAGAAGCTTGGGA 241
Query 241 GAGTCAAAGGAAGAATTACGATGTGGAATTCTTTGAAGCTGATCCTTCCAAGGATGATCT 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 GAGTCAGAGGAAGAATTACGATGTGGAATTCTTTGAAGCTGATCCTTCCAAGGATGATTT 301
Query 301 TGAAATCCAGCTACAGAAGAAGTTGGGGCAGGCTGATTTAGTTTCCTGTTGGCGCCATCT 360
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 302 TGAAATCCAGCTACAGAAGAAATTGGAGCAGGCTGATTTAGTTTCTTGTTGGCGCCATCT 361
Query 361 GCAGTTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTTACTAATGTAGCATGTTT 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 362 CCAGTTATGCTTTGAAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTT 421
Query 421 ATTGAAACCAGGGGGTTATTTTTTCGGTATTACTCCTGACTCGTCTACGATCTGGGCTAA 480
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 422 ACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGGGCAAA 481
Query 481 GTACCAGAAAAATGTTGAAGCATACCACAACAGAAGCGGTGCAAAGCCTAATGTATTTCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTACCAGAAAAATGTTGAAGCATACCACAACAGAAGCGGTGCAAAGCCTAATGTATTTCC 541
Query 541 CAACTACATTCGGTCTGAAAGTTACATGATCACTTTCGAATTGGAGGAAGAAAAATTTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AAACTACATTCGGTCTGAAAGTTACATGATCACTTTCGAATTGGAGGAAGAAAAATTTCC 601
Query 601 GCTGTTTGGAAAGAGGTACCAGCTGAAATTTTCTGGTGACAGTGCTTCGGAAGACCATTG 660
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 602 GCTGTTTGGAAAGAGGTACCAGCTGAAATTTTCTGGTGACAATGCTTCTGAAGACCATTG 661
Query 661 CTTGGTTCACTTCCCAAGCTTAATCAGGTTAGCGAGGGAAGCTGGCCTTGAATATGTGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 662 CTTGGTTCACTTCCCAAGCTTAATCAGGTTAGCGAGGGAAGCTGGCCTTGAATTTGTGGA 721
Query 721 AATTCAAAGCTTAACAGATTTTTATGATGATAACAGAGCCCAATTTGCAAGCTTGCTGAT 780
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 722 AATTCAAAGTTTAACAGATTTTTATGATGATAACAGAGCCCAGTTTGCAAGCTTGCTGAT 781
Query 781 GAATGCTGGCCCGAACTTCGTTGACCCTAGGGGAAAACTTCTTCCACGAGCATTTGATTT 840
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 782 GAATGCTGGCCCGAATTTCGTTGACCCTAGGGGAAAACTTCTTCCAAGAGCATTTGATTT 841
Query 841 GTTAGGGCTCTATGCAACATTCATATTTCAGAAGCCTGACCCAGATCTTGAACCTCCTCT 900
|||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 842 GTTAGGTCTGTATGCAACATTCATATTTCAGAAGCCTGACCCAGATATCGAACCTCCTCT 901
Query 901 AACGACCCCAATACCTTTTGAGAGCTCCAATAATCATGATGAGAGAGAATTGCCGGTGAT 960
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 902 AACGACCCCAATACCTTTTGAAAGCTCCAATAATCATGATGAGAGAGAATTGCCAGTTAT 961
Query 961 CACGGTGATCACTGATGCAAGTGCACCGGCAGAAGATCCATCACAAGGACTAGGGAAGAT 1020
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 962 CACGGTGATCACTGACGCAAGTGCACCAGCAGAAGATCCATCACAAGGACTAGGGAAGAT 1021
Query 1021 TAGT-GAACAAAAAGGAATATTGGGACCAGGCCCTGCTGATTTACGTTTCTCTGAGGCAA 1079
| || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1022 T-GTTGAACAAAAAGGAATACTGGGACCAGGCCCTGCTGATTTACGTTTCTCTGAAGCAA 1080
Query 1080 TTTGATGCCTTTT-TTCATTAGGAAGATGTACTGCTTTGGTGATGTAGCGAAAGTGGTAT 1138
||||||||||||| || |||||||||||||||||||||||||||||| |||||| || |
Sbjct 1081 TTTGATGCCTTTTATT--TTAGGAAGATGTACTGCTTTGGTGATGTAGTGAAAGTTGTTT 1138
Query 1139 ATCAGTAGTGACACAGATGAGGTAAAACCAGAGTCTGGGtttttt-tAA 1186
|||||| | |||||||||| |||||| || |||| ||||| || |||
Sbjct 1139 ATCAGT-GC--CACAGATGAGCTAAAACGAGCGTCTCGGTTTGTTATAA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5