BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485593
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52280.2 | Symbols: GTE6 | general transcription factor grou... 1609 0.0
> AT3G52280.2 | Symbols: GTE6 | general transcription factor group
E6 | chr3:19389047-19391383 REVERSE LENGTH=1311
Length=1311
Score = 1609 bits (871), Expect = 0.0
Identities = 962/1006 (96%), Gaps = 5/1006 (0%)
Strand=Plus/Plus
Query 113 ATTCGCTTGAGCATAAACTGAAAGAAGTAGAGGAGTTTTACTCGAGCATTGGTGTCTCAA 172
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 253 ATT-GCTTGAGCATAAACTGAAAGAAGTGGAGGAGTTTTACTCGAGCATTGGTGTCTCAA 311
Query 173 ACTCTGGCTCTATTGGTAAAGATACAGAAAAAGGGAGACATGTTGTGGGGATTAGGAAGA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACTCTGGCTCTATTGGTAAAGATACAGAAAAAGGGAGACATGTTGTGGGGATTAGGAAGA 371
Query 233 TTCAACAAGAGGCGGCGCGTAGAGAAGCTGTTGCTGCTAAAAGAATGCAGGACCTTATGC 292
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TTCAACAAGAGGCTGCGCGTAGAGAAGCTGTTGCTGCTAAAAGAATGCAGGACCTTATGC 431
Query 293 GTCAATTTGGAACAATCTTTCGTCAGATAACTCAGCATAAGTGTGCATGGCCGTTTATGC 352
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 432 GTCAATTTGGAACAATCTTTCGTCAGATAACTCAGCATAAGTGCGCTTGGCCGTTTATGC 491
Query 353 ATCCTGTCAATGTAGAAGGTCTTGGTTTGCATGACTACTTTGAGGTTATTGACAAGCCCA 412
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 492 ATCCTGTCAATGTTGAAGGTCTTGGTTTGCATGACTACTTTGAGGTTATTGACAAGCCTA 551
Query 413 TGGACTTCAGCACGATAAAGAATCAAATGGAGGCTAAGGATGGTACTGGGTACAAACATG 472
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 552 TGGACTTCAGCACGATAAAAAATCAAATGGAGGCTAAGGATGGTACCGGGTACAAACATG 611
Query 473 TCCTGCAAGTATATGCTGATATGCGGCTAGTGTTTGAGAACGCAATGGATTATAATGAAG 532
|| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 612 TCATGCAAATTTATGCTGATATGCGGCTAGTGTTTGAGAACGCAATGAATTATAATGAAG 671
Query 533 AAACAAGTGATGTTTACTCTATGGCGAAAAAGTTACTGGAAAAGTTTGAGGAGAAATGGG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 672 AAACAAGTGATGTTTACTCTATGGCGAAAAAGTTACTGGAAAAGTTTGAGGAGAAGTGGG 731
Query 593 CACACTTTCTTCCAAAGGTTCAAGAAGAGGAGAAAATACGGGAGGAAGAGGAGAAGCAAG 652
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 732 CACACTTTCTTCCAAAGGTTCAAGAAGAGGAGAAAATACGAGAGGAAGAGGAGAAGCAAG 791
Query 653 CAGCAACGGAGGCGCTGCTAGCAAAAGAAGCATCTCATATCAAAACAACTAGAGAATTGG 712
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CAGCAAAGGAGGCGCTGCTAGCAAAAGAAGCATCTCATATCAAAACAACTAGAGAATTGG 851
Query 713 GCAACGAGATTTGCCATGCTAATGACGAGCTGGAGAAGCTAATGCGTAAAGTTGTGGAAA 772
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GGAATGAGATTTGCCATGCTAATGACGAGCTGGAGAAGCTAATGCGTAAAGTTGTGGAAA 911
Query 773 GATGCAGGAAAATCACAATTGAGGAGAAACGTAATATTGGGTTGGCATTATTAAAATTGT 832
|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||
Sbjct 912 GATGCAGGAAAATCACAATTGAGGAGAAGCGTAATATTGGATTGGCATTGTTAAAACTGT 971
Query 833 CACCGGATGATCTACAGAAAGTGTTGGGTATAGTTGCTCAGGCTGACCCGAGCTTCCAAC 892
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 972 CACCGGATGATCTACAGAAAGTGTTGGGTATAGTTGCTCAGGCTAACCCGAGCTTTCAAC 1031
Query 893 CTAGAGCAGAGGAAGTGAGTATTGAGATGGACATACTGGACGAACCAACACTATGGAGGC 952
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CTAGAGCAGAGGAAGTTAGTATTGAGATGGACATACTGGACGAACCAACACTATGGAGGC 1091
Query 953 TAAAGTTCTTTGTGAAGGATGCGTTGGATAATGCAATGAAGAAGAAGAAAGAGGAAGAGA 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1092 TAAAGTTCTTTGTGAAGGATGCGTTGGATAATGCAATGAAGAAGAAGAAAGAAGAGGAGA 1151
Query 1013 CAAAGACTGGAGCTTTGAATGG-GACACAAAACAAAGTGGCTTCCAACAAACGAAATGCG 1071
|||||||| ||| |||| ||| | ||||||| |||| || ||| || ||||||||||||
Sbjct 1152 CAAAGACTAGAGAATTGAGTGGAG-CACAAAAGAAAGAGGTTTCGAAGAAACGAAATGCG 1210
Query 1072 ACTA-ATAAGTTAGCTGAGAGAAAAACCAAGCGGTCACGTGTATGA 1116
|||| | |||||||||||||| ||||| ||||||||||| |||||
Sbjct 1211 ACTACA-AAGTTAGCTGAGAGGAAAACGAAGCGGTCACGCATATGA 1255
Score = 126 bits (68), Expect = 4e-28
Identities = 92/102 (90%), Gaps = 7/102 (7%)
Strand=Plus/Plus
Query 1 ATGGCTGACTCAGTGCCAGAGTTAGGTCAAGTCGCCGGCCGAGGTTTACAGGTTTTCTCT 60
||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||
Sbjct 95 ATGGCTGACTCAGTGCC------AGGTCATGTCGCCGGCGGAGGTTTACAGGGTTTCTCT 148
Query 61 GTCGACGCCGAGTGCATCAAGCAGCGTGTCGACGAGG-TTTT 101
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 149 GTCGACGCCGAGTGCATCAAGCAGCGTGTCGACGAGGGTTTT 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5