BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485594
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52290.1 | Symbols: IQD3 | IQ-domain 3 | chr3:19393819-19396... 2519 0.0
> AT3G52290.1 | Symbols: IQD3 | IQ-domain 3 | chr3:19393819-19396403
FORWARD LENGTH=1848
Length=1848
Score = 2519 bits (1364), Expect = 0.0
Identities = 1707/1860 (92%), Gaps = 73/1860 (4%)
Strand=Plus/Plus
Query 1 GGACCtcttcttcttcaagatctgtttcttccttctttctctct-accagattttcttGT 59
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 GGACCCCTTCTTCTTCAAGATCTGTTTCTTCCTTCTTTCTCTCTAACCAGATTTTGTTGT 60
Query 60 ACC----------AGAGAGAGATCCCTTAATCATTCTTACACATTTATCTTTCTTGTCTG 109
||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 ACCAGAGAGAGAGAGAGAGAGATCCCTTAATAATTCTTACACATTTATCTTTCTTGTCTG 120
Query 110 AATCCTAACAAAGACTTAACTTTTGGTCGTTCTTAGAAttttttttttattttttATTCT 169
||||||||||||||||| | ||||||||| ||||| || |||| | |||||||||||
Sbjct 121 AATCCTAACAAAGACTTTAGTTTTGGTCGATCTTATAA----TTTTCT-TTTTTTATTCT 175
Query 170 TTGGATTTCTCTTCCGGGTTTCAATAATTGTCACTTCCCAAGT-GTAAGTTACAGGGTTT 228
||||||||||||||||||||||||||||||||||||| ||| | | | ||| |||
Sbjct 176 ATGGATTTCTCTTCCGGGTTTCAATAATTGTCACTTCCGTAGTATTCTG-CAAAGGTTTT 234
Query 229 GGTTTTTTCTCCGAGtttttttGTCCTTCaaaaaaaaCTTTGGTTG--CTCTCTCTGTTC 286
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 GGTTTTTTCTCCGAGTTTTTTTGTCCTTCAAAAAAAACTTTGGTTGCTCTCTCTCTGTTC 294
Query 287 AAGAAGATCCGAGCTTGATTTCTAATCTTTCATTTGAAAAGAAGAAACTAAGAAATGGGT 346
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct 295 AAGAAGATCCGAGCTTGATTCCTAATCTATCATTTGAGAAGAAGAAACTAAGAAATGGGT 354
Query 347 AAAAGTTGGTTTTCAGCTGTGAAGAAAGCCTTAAGTCCAGAACCAAAACAAAAGAAAGAT 406
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 355 AAGAGTTGGTTTTCAGCTGTGAAGAAAGCATTAAGCCCAGAACCAAAACAAAAGAAAGAG 414
Query 407 CAGAAGCCACATAAGGCCAAGAAATGGTTTGGTAAATCCAAGAAGTTGGATGTTACCAAT 466
||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 415 CAGAAGCCACATAAGTCCAAGAAATGGTTTGGTAAATCCAAGAAGCTAGATGTTACTAAT 474
Query 467 TCTGGTGAAGCAGATTCTCCTCGTACTGTCAAAGACGCAAAACTTAAGGAGATTGAGGAG 526
||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 475 TCTGGTGCAGCATATTCTCCTCGTACTGTCAAAGACGCGAAACTAAAGGAGATTGAGGAG 534
Query 527 CAGCAGAGCAGACATGCTTACTCTGTGGCTATtgcaactgctgcagctgctgaggcagcc 586
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 CAACAGAGCAGACATGCTTACTCTGTGGCTATTGCAACTGCTGCAGCTGCAGAGGCAGCC 594
Query 587 gttgctgctgctcaagctgctgctgAAGTTGTTCGTCTCGCTGCATTATCACGTTTCCCC 646
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 595 GTTGCAGCTGCTCAAGCTGCTGCTGAAGTTGTTCGTCTCTCTGCATTATCACGGTTCCCC 654
Query 647 GGGAAATCAAAGGAAGAGATCGCCGCTATCAAGATTCAGACAGCATTTAGAGGATATATG 706
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGGAAATCAATGGAAGAGATCGCCGCTATCAAGATTCAGACAGCATTTAGAGGATATATG 714
Query 707 GCAAGAAGAGCATTGCGTGCGTTGAGAGGTCTTGTGAGGCTAAAATCTTTAGTCCAGGGG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCAAGAAGAGCATTGCGTGCGTTGAGAGGTCTTGTGAGGCTAAAATCTTTAGTCCAGGGG 774
Query 767 AAATGTGTGAGACGTCAAGCCACGTCAACATTGCAAAGCATGCAAACACTAGCTAGAGTA 826
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 775 AAATGTGTGAGACGTCAAGCCACATCTACATTGCAAAGCATGCAAACACTAGCTAGAGTA 834
Query 827 CAATATCAGATTCGTGAGAGGAGGCACCGATTGTCTGAGGATAAGCAGGCTTTAACACGG 886
|||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 835 CAATATCAGATTCGTGAGAGAAGGCTCCGATTGTCTGAGGATAAACAGGCTTTAACACGA 894
Query 887 CAGCTCCAACAAAAACACAAAAAAGATTTTGATAAGACTGGAGAAAATTGGAATGATAGT 946
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 895 CAGCTCCAACAAAAACACAATAAAGACTTTGATAAGACTGGAGAAAATTGGAATGATAGT 954
Query 947 ACCCTGTCGCGGGAGAAAGTTGAAGCAAACATGTTGAACAAGCAAGTAGCAACAATGAGA 1006
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACATTGTCGCGGGAGAAAGTTGAAGCAAACATGTTGAACAAGCAAGTAGCAACAATGAGA 1014
Query 1007 AGAGAGAGAGCGCTTGCATACGCCTTCACG-CATCAGAATACGTGGAAAAACTCATCTAA 1065
||||| | |||||||||||| || |||| | || |||||||| |||||||||||| ||||
Sbjct 1015 AGAGAAAAAGCGCTTGCATATGCATTCA-GTCACCAGAATACATGGAAAAACTCAACTAA 1073
Query 1066 AATGGGTTCTCAGACATTCATGGACCCTAACAATCCACATTGGGGTTGGAGTTGGCTCGA 1125
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1074 AATGGGTTCTCAAACATTCATGGACCCTAACAATCCGCATTGGGGTTGGAGTTGGCTAGA 1133
Query 1126 ACGTTGGATGGCTGCTCGACCAAATGAAAACCAGTCAGTCATACTCACACCAGATAATGC 1185
|||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||
Sbjct 1134 ACGTTGGATGGCTGCTCGACCAAACGAAAACCA--C--TCA--CTCACACCAGATAATGC 1187
Query 1186 TGACAAAGAGTCTTCT---AGC-------C--GC-G--CCATGTCTGAGATGGTTCCCCG 1230
||| ||||| |||||| || | || | |||||||||||||| |||| ||
Sbjct 1188 TGAAAAAGACTCTTCTGCTAGGAGTGTAGCAAGCCGTGCCATGTCTGAGATGATTCCACG 1247
Query 1231 TGGCAAAAACCTTTCAGCAAGAGGAAAGACACCAAATAGTCGAAGAGGGTCAAGCCCTAG 1290
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1248 AGGCAAAAACCTTTCACCAAGAGGAAAGACACCAAACAGTCGAAGAGGGTCAAGCCCGAG 1307
Query 1291 AGTGAGGCAAGTCCCAAGTGAAGACTCAAACAGCAT-GTTGAGTATTC-AATCAGAACAA 1348
|||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||
Sbjct 1308 AGTGAGGCAAGTCCCAAGTGAAGACTCAAACAGCATTGT-GAGT-TTCCAATCAGAACAA 1365
Query 1349 CCTTGCAACCGTAGGCATAGCACTTGTGGATCAATTCCATCAACTAGAGACGATGAAAGC 1408
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 CCTTGCAATCGTAGGCATAGCACTTGTGGATCAATTCCATCAACTAGAGACGATGAAAGC 1425
Query 1409 TTCACCAGTAGTTTCTCTCAGTCAGTTCCAGGCTACATGGCGCCTACACAAGCCGCCAAA 1468
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1426 TTCACCAGTAGTTTCTCTCAGTCAGTTCCAGGCTACATGGCACCTACACAAGCCGCCAAA 1485
Query 1469 GCAAGAGCTCGATTCTCAAACCTTAGTCCTCTAAGCTCAGAGAAGACAGCGAAAAAACGG 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GCAAGAGCTCGATTCTCAAACCTTAGTCCTCTAAGCTCAGAGAAGACAGCGAAAAAACGG 1545
Query 1529 CTTTGCTTCTCGGGATCTCCTAAGACTGTAAGACGGTTTTCAGGTCCACCGAAGCTGGAG 1588
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1546 CTTTCCTTCTCGGGATCTCCTAAGACTGTAAGACGGTTTTCAGGTCCACCAAAGCTGGAA 1605
Query 1589 AGCAATCTTACTAAGAAAGATACTAATCTTGCTTAAGCAGAGGAATGGATATATA----- 1643
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1606 AGCAATGTTACTAAGAAAGATACTAATCTTGCTTAAACAGAG-AATGGATATATATATAT 1664
Query 1644 -GTTTATATATGACATTGTTGATTAGGCAAAAGTCTGGTGCAGAGGTGAATTCAGAGAAG 1702
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 AGTTTATATCTGACATTGTTGATTAGGCAAAAGTCTGGTGCAGAGGTGAATTCAGAGAAG 1724
Query 1703 ATTCTGTTATGTATTTGttt-tttt---G--ACT-------ACTACAA-A--CTTAATTA 1746
|||||||||||| ||||||| |||| | | | ||||||| | ||||||||
Sbjct 1725 ATTCTGTTATGTCTTTGTTTGTTTTTTTGGTATTTTTTTTTACTACAACAAACTTAATTA 1784
Query 1747 TTTGTTTGATTTTGTTTTAATTGGTT-AACATATTTGTATTGATGAAGAGACAAATATAA 1805
||||||||| ||| ||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1785 TTTGTTTGACTTT-TTT-AATTGGTTGAACATATTTGTATTGATGAAGAGACATATATAA 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5